BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1740.p (231 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AEG71069.1| response regulator in two-component regulatory sy... 340 1e-91 ref|YP_001899350.1| winged helix family two component heavy meta... 337 7e-91 ref|YP_001899288.1| winged helix family two component heavy meta... 335 2e-90 ref|ZP_08506055.1| Transcriptional regulatory protein CusR [Meth... 331 4e-89 gb|ADD73560.1| two-component heavy metal response regulator [Ach... 329 2e-88 >gb|AEG71069.1| response regulator in two-component regulatory system with cops, regulation of copper resistance [Ralstonia solanacearum Po82] Length = 228 Score = 340 bits (871), Expect = 1e-91, Method: Composition-based stats. Identities = 182/225 (80%), Positives = 206/225 (91%) Query: 1 MKLLVVEDEPKTGEYIQRGLTEAGFVVDLAKNGLDGYHLAMTEPYDLVVLDVMLPDVDGW 60 MKLLVVEDEPKTGEY+Q+GLTEAGFVVDLA+NG+DG HLAMT YDL+VLDVMLPDVDGW Sbjct: 1 MKLLVVEDEPKTGEYLQQGLTEAGFVVDLARNGVDGRHLAMTGDYDLLVLDVMLPDVDGW 60 Query: 61 RIVQSLRDAQKTVPVLFLTARDSVSDRVKGLEMGADDYLVKPFAFSELLARVRTLLRRGS 120 +IVQSLR A++ VPVLFLTARDSV+DRVKGLEMGADDYLVKPFAF+ELLARVRTLLRRG+ Sbjct: 61 QIVQSLRAAEQAVPVLFLTARDSVADRVKGLEMGADDYLVKPFAFAELLARVRTLLRRGT 120 Query: 121 NVVLQDRLTVADLVLDLPRRSASRGGRKLVLTSKEFALLEFLARRRGEVLPRSLIASQIW 180 V DR+ VADLVLDL RR ASRGG+K+ LTSKEF+LLE L RRRGEVLPRSLIASQ+W Sbjct: 121 GAVSADRILVADLVLDLARRRASRGGQKIPLTSKEFSLLELLVRRRGEVLPRSLIASQVW 180 Query: 181 DINFNSDSNVIDVAIRRLRAKVDDGFEHKLILTVRGVGYILDDAD 225 D+NF+SD+NVIDVAIRRLRAK+DD FE KLI TVRG+GY+L+D + Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDNFEPKLIHTVRGMGYVLEDPE 225 >ref|YP_001899350.1| winged helix family two component heavy metal response transcriptional regulator [Ralstonia pickettii 12J] gb|ACD26918.1| two component heavy metal response transcriptional regulator, winged helix family [Ralstonia pickettii 12J] Length = 228 Score = 337 bits (864), Expect = 7e-91, Method: Composition-based stats. Identities = 179/222 (80%), Positives = 203/222 (91%) Query: 1 MKLLVVEDEPKTGEYIQRGLTEAGFVVDLAKNGLDGYHLAMTEPYDLVVLDVMLPDVDGW 60 MKLLVVEDEPKTGEY+Q+GLTEAGFVVDLA NG DG HLAMT YDL+VLDVMLPDVDGW Sbjct: 1 MKLLVVEDEPKTGEYLQQGLTEAGFVVDLACNGTDGRHLAMTGEYDLLVLDVMLPDVDGW 60 Query: 61 RIVQSLRDAQKTVPVLFLTARDSVSDRVKGLEMGADDYLVKPFAFSELLARVRTLLRRGS 120 +IVQSLR +++ VPVLFLTARDSV+DRVKGLE+GADDYLVKPFAF+ELLARVRTLLRRG+ Sbjct: 61 QIVQSLRASEQAVPVLFLTARDSVADRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120 Query: 121 NVVLQDRLTVADLVLDLPRRSASRGGRKLVLTSKEFALLEFLARRRGEVLPRSLIASQIW 180 + V DR+ VADLVLDL RR ASRGG+K+ LTSKEF+LLE L RRRGEVLPRSLIASQ+W Sbjct: 121 SAVTADRIQVADLVLDLARRRASRGGQKIPLTSKEFSLLELLVRRRGEVLPRSLIASQVW 180 Query: 181 DINFNSDSNVIDVAIRRLRAKVDDGFEHKLILTVRGVGYILD 222 D+NF+SD+NVIDVAIRRLRAK+DD FE KLI TVRG+GY+L+ Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDHFEPKLIQTVRGMGYVLE 222 >ref|YP_001899288.1| winged helix family two component heavy metal response transcriptional regulator [Ralstonia pickettii 12J] ref|YP_002973803.1| two component heavy metal response transcriptional regulator, winged helix family [Ralstonia pickettii 12D] gb|ACD26856.1| two component heavy metal response transcriptional regulator, winged helix family [Ralstonia pickettii 12J] gb|ACS66559.1| two component heavy metal response transcriptional regulator, winged helix family [Ralstonia pickettii 12D] Length = 228 Score = 335 bits (860), Expect = 2e-90, Method: Composition-based stats. Identities = 183/231 (79%), Positives = 207/231 (89%), Gaps = 3/231 (1%) Query: 1 MKLLVVEDEPKTGEYIQRGLTEAGFVVDLAKNGLDGYHLAMTEPYDLVVLDVMLPDVDGW 60 MKLLVVEDEPKTGEY+Q+GLTEAGFVVDLA+NG DG HLAM+ YDL++LDVMLPDVDGW Sbjct: 1 MKLLVVEDEPKTGEYLQQGLTEAGFVVDLARNGTDGRHLAMSGDYDLLLLDVMLPDVDGW 60 Query: 61 RIVQSLRDAQKTVPVLFLTARDSVSDRVKGLEMGADDYLVKPFAFSELLARVRTLLRRGS 120 +IVQSLR A++ VPVLFLTARDSV+DRVKGLEMGADDYLVKPFAF+ELLARVRTLLRRG+ Sbjct: 61 QIVQSLRAAEQAVPVLFLTARDSVADRVKGLEMGADDYLVKPFAFAELLARVRTLLRRGT 120 Query: 121 NVVLQDRLTVADLVLDLPRRSASRGGRKLVLTSKEFALLEFLARRRGEVLPRSLIASQIW 180 V DR+ VADLVLDL RR ASRGG+K+ LTSKEF+LLE L RRRGEVLPRSLIASQ+W Sbjct: 121 GAVSSDRIQVADLVLDLARRRASRGGQKIPLTSKEFSLLELLVRRRGEVLPRSLIASQVW 180 Query: 181 DINFNSDSNVIDVAIRRLRAKVDDGFEHKLILTVRGVGYILDDADAPGSAA 231 D+NF+SD+NVIDVAIRRLRAK+DD FE KLI TVRG+GY+L +AP AA Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDHFEPKLIQTVRGMGYVL---EAPEDAA 228 >ref|ZP_08506055.1| Transcriptional regulatory protein CusR [Methyloversatilis universalis FAM5] gb|EGK70633.1| Transcriptional regulatory protein CusR [Methyloversatilis universalis FAM5] Length = 249 Score = 331 bits (849), Expect = 4e-89, Method: Composition-based stats. Identities = 180/225 (80%), Positives = 200/225 (88%) Query: 1 MKLLVVEDEPKTGEYIQRGLTEAGFVVDLAKNGLDGYHLAMTEPYDLVVLDVMLPDVDGW 60 MKLLVVEDE KT +Y+++GL EAGFVVDLA+NGLDG+HLAM+E YDLVVLDVMLPDVDGW Sbjct: 20 MKLLVVEDENKTADYVRQGLMEAGFVVDLARNGLDGHHLAMSETYDLVVLDVMLPDVDGW 79 Query: 61 RIVQSLRDAQKTVPVLFLTARDSVSDRVKGLEMGADDYLVKPFAFSELLARVRTLLRRGS 120 RIV+SLRDA K VPVLFLTAR SV DRVKGLE+GADDYLVKPFAFSELLARVRTLLRRGS Sbjct: 80 RIVRSLRDAGKQVPVLFLTARGSVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 139 Query: 121 NVVLQDRLTVADLVLDLPRRSASRGGRKLVLTSKEFALLEFLARRRGEVLPRSLIASQIW 180 DR+ VADLVLDLPRR A+R G+++ LTSKEFALLE LARR+GEVLPRSLIASQ+W Sbjct: 140 APSQPDRIQVADLVLDLPRRRATRAGQRINLTSKEFALLELLARRQGEVLPRSLIASQVW 199 Query: 181 DINFNSDSNVIDVAIRRLRAKVDDGFEHKLILTVRGVGYILDDAD 225 D+NF+SDSNVIDVAIRRLRAK+DD F KLI TVRG+GY LD D Sbjct: 200 DMNFDSDSNVIDVAIRRLRAKIDDAFNPKLIHTVRGMGYTLDAPD 244 >gb|ADD73560.1| two-component heavy metal response regulator [Achromobacter sp. AO22] Length = 230 Score = 329 bits (844), Expect = 2e-88, Method: Composition-based stats. Identities = 180/225 (80%), Positives = 200/225 (88%) Query: 1 MKLLVVEDEPKTGEYIQRGLTEAGFVVDLAKNGLDGYHLAMTEPYDLVVLDVMLPDVDGW 60 MKLLVVEDE KT +Y+++GL EAGFVVDLA+NGLDG+HLAM+E YDLVVLDVMLPDVDGW Sbjct: 1 MKLLVVEDENKTADYVRQGLMEAGFVVDLARNGLDGHHLAMSETYDLVVLDVMLPDVDGW 60 Query: 61 RIVQSLRDAQKTVPVLFLTARDSVSDRVKGLEMGADDYLVKPFAFSELLARVRTLLRRGS 120 RIV+SLRDA K VPVLFLTAR SV DRVKGLE+GADDYLVKPFAFSELLARVRTLLRRGS Sbjct: 61 RIVRSLRDAGKQVPVLFLTARGSVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120 Query: 121 NVVLQDRLTVADLVLDLPRRSASRGGRKLVLTSKEFALLEFLARRRGEVLPRSLIASQIW 180 DR+ VADLVLDLPRR A+R G+++ LTSKEFALLE LARR+GEVLPRSLIASQ+W Sbjct: 121 APSQPDRIQVADLVLDLPRRRATRAGQRINLTSKEFALLELLARRQGEVLPRSLIASQVW 180 Query: 181 DINFNSDSNVIDVAIRRLRAKVDDGFEHKLILTVRGVGYILDDAD 225 D+NF+SDSNVIDVAIRRLRAK+DD F KLI TVRG+GY LD D Sbjct: 181 DMNFDSDSNVIDVAIRRLRAKIDDAFNPKLIHTVRGMGYTLDAPD 225