BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1730.p (221 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001109885.1| two component transcriptional regulator [Bur... 351 4e-95 ref|YP_585146.1| winged helix family two component transcription... 351 5e-95 ref|YP_285504.1| two component transcriptional regulator [Dechlo... 345 3e-93 ref|ZP_03268711.1| two component transcriptional regulator, wing... 342 2e-92 ref|ZP_08273573.1| Response regulator receiver:Transcriptional r... 330 1e-88 >ref|YP_001109885.1| two component transcriptional regulator [Burkholderia vietnamiensis G4] gb|ABO60104.1| two component transcriptional regulator, winged helix family [Burkholderia vietnamiensis G4] Length = 221 Score = 351 bits (901), Expect = 4e-95, Method: Composition-based stats. Identities = 182/221 (82%), Positives = 202/221 (91%) Query: 1 MRVLLVEDDAMIGEAIQAALKDASYAVDWIKDGQIAITTITSQHYDIALLDLGLPGKDGL 60 MRVLLVEDD MIG+AIQ ALKDASYA DW+KDGQ A+TT+ QHYD+ LLDLGLPGKDGL Sbjct: 1 MRVLLVEDDPMIGDAIQGALKDASYAADWVKDGQTALTTLGCQHYDLVLLDLGLPGKDGL 60 Query: 61 DVLRSIRAKDIPIPLLIITARDGLDDRLQGLDGGADDYVLKPFQMAELLARMRAVLRRKG 120 +VL SIRAKD PIPLLIITARDGLDDRL+GLDGGADDYV KPFQMAELLARMRAVLRRKG Sbjct: 61 EVLASIRAKDNPIPLLIITARDGLDDRLRGLDGGADDYVSKPFQMAELLARMRAVLRRKG 120 Query: 121 GIASPLLTNGLLSLDPASKEASLRDGGSIQLSNREFALLQALLMRPGAILSRSELEDRIY 180 G A+P+L+NG+++LDPA+KEA DG +QLSNREF+LLQALL+RPGAILSRSELEDRIY Sbjct: 121 GTAAPVLSNGVVTLDPATKEACANDGPQVQLSNREFSLLQALLVRPGAILSRSELEDRIY 180 Query: 181 GWNEEVESNAVEYLIHSLRRKLGGDIIKNVRGVGWMVSKAG 221 GW EEVESNAVEYLIH+LRRKLGG++IKNVRGVGWMVSK Sbjct: 181 GWGEEVESNAVEYLIHALRRKLGGEVIKNVRGVGWMVSKGA 221 >ref|YP_585146.1| winged helix family two component transcriptional regulator (Tn6048) [Cupriavidus metallidurans CH34] ref|YP_586176.1| transcriptional regulator [Cupriavidus metallidurans CH34] ref|YP_587109.1| transcriptional regulator [Cupriavidus metallidurans CH34] ref|ZP_04763697.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] gb|ABF09877.1| two component transcriptional regulator, winged helix family (Tn6048) [Cupriavidus metallidurans CH34] gb|ABF10907.1| two component transcriptional regulator, winged helix family (Tn6048) [Cupriavidus metallidurans CH34] gb|ABF11840.1| two component transcriptional regulator, winged helix family (Tn6048) [Cupriavidus metallidurans CH34] gb|EER59508.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] gb|ACT97243.1| MmfR [Synthetic plasmid pMOL98] gb|EGD05874.1| winged helix family two component transcriptional regulator [Burkholderia sp. TJI49] Length = 221 Score = 351 bits (900), Expect = 5e-95, Method: Composition-based stats. Identities = 181/221 (81%), Positives = 202/221 (91%) Query: 1 MRVLLVEDDAMIGEAIQAALKDASYAVDWIKDGQIAITTITSQHYDIALLDLGLPGKDGL 60 MRVLLVEDD MIG+AIQ ALKDASYA DW+KDGQ A+TT+ QHYD+ LLDLGLPGKDGL Sbjct: 1 MRVLLVEDDPMIGDAIQGALKDASYAADWVKDGQTALTTLGCQHYDLVLLDLGLPGKDGL 60 Query: 61 DVLRSIRAKDIPIPLLIITARDGLDDRLQGLDGGADDYVLKPFQMAELLARMRAVLRRKG 120 +VL SIRAKD P+PLLIITARDGLDDRL+GLDGGADDYV KPFQMAELLARMRAVLRRKG Sbjct: 61 EVLASIRAKDNPVPLLIITARDGLDDRLRGLDGGADDYVSKPFQMAELLARMRAVLRRKG 120 Query: 121 GIASPLLTNGLLSLDPASKEASLRDGGSIQLSNREFALLQALLMRPGAILSRSELEDRIY 180 G A+P+L+NG+++LDPA+KEA DG +QLSNREF+LLQALL+RPGAILSRSELEDRIY Sbjct: 121 GTAAPVLSNGVVTLDPATKEACANDGPQVQLSNREFSLLQALLVRPGAILSRSELEDRIY 180 Query: 181 GWNEEVESNAVEYLIHSLRRKLGGDIIKNVRGVGWMVSKAG 221 GW EEVESNAVEYLIH+LRRKLGG++IKNVRGVGWMVSK Sbjct: 181 GWGEEVESNAVEYLIHALRRKLGGEVIKNVRGVGWMVSKGA 221 >ref|YP_285504.1| two component transcriptional regulator [Dechloromonas aromatica RCB] gb|AAZ47034.1| two component transcriptional regulator, winged helix family [Dechloromonas aromatica RCB] Length = 221 Score = 345 bits (884), Expect = 3e-93, Method: Composition-based stats. Identities = 176/219 (80%), Positives = 204/219 (93%) Query: 1 MRVLLVEDDAMIGEAIQAALKDASYAVDWIKDGQIAITTITSQHYDIALLDLGLPGKDGL 60 MRVLLVEDD MIGEAIQ ALKDASYA DW+K+GQ A+TT+ QHYD+ LLDLGLPGKDGL Sbjct: 1 MRVLLVEDDFMIGEAIQGALKDASYAADWVKNGQTALTTLGCQHYDLVLLDLGLPGKDGL 60 Query: 61 DVLRSIRAKDIPIPLLIITARDGLDDRLQGLDGGADDYVLKPFQMAELLARMRAVLRRKG 120 +VL SIRAKD P+PLLIITARDGL+DRL+GLDGGADDY+LKPF+MAELLARMRAVLRRKG Sbjct: 61 EVLTSIRAKDNPVPLLIITARDGLNDRLRGLDGGADDYLLKPFEMAELLARMRAVLRRKG 120 Query: 121 GIASPLLTNGLLSLDPASKEASLRDGGSIQLSNREFALLQALLMRPGAILSRSELEDRIY 180 G A+ +L+NG++SLDPA++EA++ + S+QLSNREFALLQALL+RPGAILSRS+LEDRIY Sbjct: 121 GNATSVLSNGVVSLDPATREAAVNNSASVQLSNREFALLQALLVRPGAILSRSDLEDRIY 180 Query: 181 GWNEEVESNAVEYLIHSLRRKLGGDIIKNVRGVGWMVSK 219 GW EEVESNAVE+LIH+LRRKLGG++IKNVRGVGWMVSK Sbjct: 181 GWGEEVESNAVEFLIHALRRKLGGEVIKNVRGVGWMVSK 219 >ref|ZP_03268711.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] gb|EDZ99706.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] Length = 221 Score = 342 bits (878), Expect = 2e-92, Method: Composition-based stats. Identities = 181/219 (82%), Positives = 200/219 (91%) Query: 1 MRVLLVEDDAMIGEAIQAALKDASYAVDWIKDGQIAITTITSQHYDIALLDLGLPGKDGL 60 MRVLLVEDD MIG+AIQ ALKDASYA DW+KDGQ A+TT+ QHYD+ LLDL LPGKDGL Sbjct: 1 MRVLLVEDDPMIGDAIQGALKDASYAADWVKDGQTALTTLGCQHYDLVLLDLSLPGKDGL 60 Query: 61 DVLRSIRAKDIPIPLLIITARDGLDDRLQGLDGGADDYVLKPFQMAELLARMRAVLRRKG 120 +VL IRAKD PIPLLIITARDGLDDRL+GLDGGADDYVLKPFQMAELLAR+RAVLRRKG Sbjct: 61 EVLVRIRAKDNPIPLLIITARDGLDDRLRGLDGGADDYVLKPFQMAELLARIRAVLRRKG 120 Query: 121 GIASPLLTNGLLSLDPASKEASLRDGGSIQLSNREFALLQALLMRPGAILSRSELEDRIY 180 G A+P L+NG+LSLDPA+KEAS+ G +QLSNREF+LLQALL+RPGAILSRSELEDRIY Sbjct: 121 GSAAPALSNGVLSLDPATKEASVSGGSPLQLSNREFSLLQALLVRPGAILSRSELEDRIY 180 Query: 181 GWNEEVESNAVEYLIHSLRRKLGGDIIKNVRGVGWMVSK 219 GW EEVESNAVEYLIH+LRRKLG ++IKNVRGVGWMVSK Sbjct: 181 GWGEEVESNAVEYLIHALRRKLGSEVIKNVRGVGWMVSK 219 >ref|ZP_08273573.1| Response regulator receiver:Transcriptional regulatory protein [Oxalobacteraceae bacterium IMCC9480] gb|EGF32956.1| Response regulator receiver:Transcriptional regulatory protein [Oxalobacteraceae bacterium IMCC9480] Length = 221 Score = 330 bits (845), Expect = 1e-88, Method: Composition-based stats. Identities = 171/219 (78%), Positives = 196/219 (89%) Query: 1 MRVLLVEDDAMIGEAIQAALKDASYAVDWIKDGQIAITTITSQHYDIALLDLGLPGKDGL 60 MRVLLVEDD MIGEAIQ ALKDASYA DW+K+GQ A+TT+ Q YD+ LLDLGLPGKDGL Sbjct: 1 MRVLLVEDDIMIGEAIQGALKDASYAADWVKNGQTALTTLACQRYDLVLLDLGLPGKDGL 60 Query: 61 DVLRSIRAKDIPIPLLIITARDGLDDRLQGLDGGADDYVLKPFQMAELLARMRAVLRRKG 120 +VL SIRA P+PLLIITARDGLDDR++GLDGGADDY+LKPF++AELLARMRAVLRRKG Sbjct: 61 EVLTSIRAIGNPVPLLIITARDGLDDRVRGLDGGADDYLLKPFEIAELLARMRAVLRRKG 120 Query: 121 GIASPLLTNGLLSLDPASKEASLRDGGSIQLSNREFALLQALLMRPGAILSRSELEDRIY 180 G A+P+L NG++SLDPA++ A++ DG S+QLSNREF LL ALL RPGAILSR ELEDR+Y Sbjct: 121 GSAAPVLGNGIVSLDPATRGATVNDGESVQLSNREFGLLHALLTRPGAILSRRELEDRLY 180 Query: 181 GWNEEVESNAVEYLIHSLRRKLGGDIIKNVRGVGWMVSK 219 GW EEVESNAVE+LIH+LRRKLG D+IKNVRGVGWMVSK Sbjct: 181 GWGEEVESNAVEFLIHALRRKLGSDVIKNVRGVGWMVSK 219