BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1729.p (461 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001109886.1| integral membrane sensor signal transduction... 528 e-148 ref|ZP_04763698.1| histidine kinase [Acidovorax delafieldii 2AN]... 527 e-147 gb|ACT97186.1| MmfS [Synthetic plasmid pMOL98] 526 e-147 ref|ZP_03268712.1| integral membrane sensor signal transduction ... 524 e-146 ref|YP_285503.1| sensor histidine kinase [Dechloromonas aromatic... 517 e-144 >ref|YP_001109886.1| integral membrane sensor signal transduction histidine kinase [Burkholderia vietnamiensis G4] gb|ABO60105.1| integral membrane sensor signal transduction histidine kinase [Burkholderia vietnamiensis G4] Length = 450 Score = 528 bits (1360), Expect = e-148, Method: Composition-based stats. Identities = 304/448 (67%), Positives = 364/448 (81%), Gaps = 1/448 (0%) Query: 1 MDGLKSRLNESVQLKLSVILCMAILLVAIVAGVFSFVSALDESHELQDDMLRQIAHLMER 60 MDGLK RLNESVQLKLS L +AIL+VA+VAGVFSF+SA DE+HELQDD+LRQ+A LM+R Sbjct: 1 MDGLKRRLNESVQLKLSFTLSLAILVVAVVAGVFSFLSAFDEAHELQDDVLRQVAQLMDR 60 Query: 61 QRLSSASPVPEVSYASSNEESRVIVQHLG-YSASKAEIDAEEALPLSSTLMDGLHDIDAA 119 QRL A P ++ +EESRVIVQ LG S S +DA LPL +TL DGLH ++ Sbjct: 61 QRLLPAVPTTDIRLKDVDEESRVIVQRLGEVSPSTVGVDAGGVLPLPATLADGLHTLEVG 120 Query: 120 GENFRVLVQTMPSGERIAVAQESDFRNEIARDGALRTIMPFLLLVPVLLLIVADLIRKMF 179 GE FRVLV+T SGERIAVAQES FRNEIARDGALRT+MPFL+LVPVLLLIVADL+RKMF Sbjct: 121 GETFRVLVKTTASGERIAVAQESGFRNEIARDGALRTVMPFLILVPVLLLIVADLVRKMF 180 Query: 180 RPIAALSKEVDQRQDEQLHPVEVSHFPVEVRPFAVAINRLLGRIDQSMASQRRFVADAAH 239 +PIAALSKE+DQR +++LHPVE H PVEVRPFAVAINRLL R+ QSM SQRRFVADAAH Sbjct: 181 QPIAALSKEIDQRAEQELHPVEDRHLPVEVRPFAVAINRLLARVGQSMESQRRFVADAAH 240 Query: 240 ELRSPMTAISLQAERLEEADMSEQARQRLRALREGIDRGRNLLNQLLALAKAQSSVSAVA 299 ELRSP+TA+SLQAERL EA+MS AR+RL LR+GI+RGR+LL+QLL LAKAQS+ Sbjct: 241 ELRSPLTAMSLQAERLAEAEMSSVARERLTVLRQGIERGRSLLDQLLTLAKAQSATDLPK 300 Query: 300 TPISVQTIYRRVLEDLMPLAESKQIDIGVDGQRDARLLVGELDLFALVRNLADNAVRYTP 359 +P+SVQ+IYRRVLEDLMPLAE+K IDIGV+G DA + ELD+ A+V+NL DNA+RYTP Sbjct: 301 SPVSVQSIYRRVLEDLMPLAEAKHIDIGVEGTLDAEVWASELDMIAVVKNLVDNAIRYTP 360 Query: 360 NGGKVDLALEFEDENVVLIVEDSGPGIPVVERARIFEAFHRLLGSNQIGSGLGLSIVKAI 419 GG+VDL++ + VVL ++DSGPGIP+ ER R+F+ F+R LGS QIGSGLGLSIV+ I Sbjct: 361 EGGRVDLSVGVSEGKVVLRIQDSGPGIPLAERDRVFDPFYRTLGSEQIGSGLGLSIVQTI 420 Query: 420 ADRLGASITLGFRDESDRSGLRVAVSIP 447 A+R+GA I L F D+ ++GL VAV P Sbjct: 421 ANRIGAEIRLDFSDQEKQTGLNVAVIAP 448 >ref|ZP_04763698.1| histidine kinase [Acidovorax delafieldii 2AN] gb|EER59509.1| histidine kinase [Acidovorax delafieldii 2AN] Length = 450 Score = 527 bits (1358), Expect = e-147, Method: Composition-based stats. Identities = 304/448 (67%), Positives = 364/448 (81%), Gaps = 1/448 (0%) Query: 1 MDGLKSRLNESVQLKLSVILCMAILLVAIVAGVFSFVSALDESHELQDDMLRQIAHLMER 60 MDGLK RLNESVQLKLS L +AIL+VA+VAGVFSF+SA DE+HELQDD+LRQ+A LM+R Sbjct: 1 MDGLKRRLNESVQLKLSFTLSLAILVVAVVAGVFSFLSAFDEAHELQDDVLRQVAQLMDR 60 Query: 61 QRLSSASPVPEVSYASSNEESRVIVQHLG-YSASKAEIDAEEALPLSSTLMDGLHDIDAA 119 QRL A P ++ +EESRVIVQ LG S S +DA LPL +TL DGLH ++ Sbjct: 61 QRLLPAVPTTDIRLKDVDEESRVIVQRLGEVSPSTVGVDAGGVLPLPATLADGLHTLEFG 120 Query: 120 GENFRVLVQTMPSGERIAVAQESDFRNEIARDGALRTIMPFLLLVPVLLLIVADLIRKMF 179 GE FRVLV+T SGERIAVAQES FRNEIARDGALRT+MPFL+LVPVLLLIVADL+RKMF Sbjct: 121 GETFRVLVKTTASGERIAVAQESGFRNEIARDGALRTVMPFLILVPVLLLIVADLVRKMF 180 Query: 180 RPIAALSKEVDQRQDEQLHPVEVSHFPVEVRPFAVAINRLLGRIDQSMASQRRFVADAAH 239 +PIAALSKE+DQR +++LHPVE H PVEVRPFAVAINRLL R+ QSM SQRRFVADAAH Sbjct: 181 QPIAALSKEIDQRAEQELHPVEDRHLPVEVRPFAVAINRLLARVSQSMESQRRFVADAAH 240 Query: 240 ELRSPMTAISLQAERLEEADMSEQARQRLRALREGIDRGRNLLNQLLALAKAQSSVSAVA 299 ELRSP+TA+SLQAERL EA+MS AR+RL LR+GI+RGR+LL+QLL LAKAQS+ Sbjct: 241 ELRSPLTAMSLQAERLAEAEMSSVARERLTVLRQGIERGRSLLDQLLTLAKAQSATDLPK 300 Query: 300 TPISVQTIYRRVLEDLMPLAESKQIDIGVDGQRDARLLVGELDLFALVRNLADNAVRYTP 359 +P+SVQ+IYRRVLEDLMPLAE+K IDIGV+G DA + ELD+ A+V+NL DNA+RYTP Sbjct: 301 SPVSVQSIYRRVLEDLMPLAEAKHIDIGVEGALDAEVWASELDMIAVVKNLVDNAIRYTP 360 Query: 360 NGGKVDLALEFEDENVVLIVEDSGPGIPVVERARIFEAFHRLLGSNQIGSGLGLSIVKAI 419 GG+VDL++ + VVL ++DSGPGIP+ ER R+F+ F+R LGS QIGSGLGLSIV+ I Sbjct: 361 EGGRVDLSVGVSEGKVVLRIQDSGPGIPLAERDRVFDPFYRTLGSEQIGSGLGLSIVQTI 420 Query: 420 ADRLGASITLGFRDESDRSGLRVAVSIP 447 A+R+GA I L F D+ ++GL VAV P Sbjct: 421 ANRIGAEIRLDFSDQEKQTGLNVAVIAP 448 >gb|ACT97186.1| MmfS [Synthetic plasmid pMOL98] Length = 450 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 303/448 (67%), Positives = 363/448 (81%), Gaps = 1/448 (0%) Query: 1 MDGLKSRLNESVQLKLSVILCMAILLVAIVAGVFSFVSALDESHELQDDMLRQIAHLMER 60 MDGLK RLNESVQLKLS L +AIL+VA+VAGVFSF+SA DE+HELQDD+LRQ+A LM+R Sbjct: 1 MDGLKRRLNESVQLKLSFTLSLAILVVAVVAGVFSFLSAFDEAHELQDDVLRQVAQLMDR 60 Query: 61 QRLSSASPVPEVSYASSNEESRVIVQHLG-YSASKAEIDAEEALPLSSTLMDGLHDIDAA 119 QRL A P ++ +EESRVIVQ LG S S +DA LPL +TL DGLH ++ Sbjct: 61 QRLLPAVPTTDIRLKDVDEESRVIVQRLGEVSPSTVGVDAGGVLPLPATLADGLHTLEVG 120 Query: 120 GENFRVLVQTMPSGERIAVAQESDFRNEIARDGALRTIMPFLLLVPVLLLIVADLIRKMF 179 GE FRVLV+T SGERIAVAQES FRNEIARDGALRT+MPFL+LVPVLLLIVADL+RKMF Sbjct: 121 GETFRVLVKTTASGERIAVAQESGFRNEIARDGALRTVMPFLILVPVLLLIVADLVRKMF 180 Query: 180 RPIAALSKEVDQRQDEQLHPVEVSHFPVEVRPFAVAINRLLGRIDQSMASQRRFVADAAH 239 +PIAALSKE+DQR +++LHPVE H PVEVRPF VAINRLL R+ QSM SQRRFVADAAH Sbjct: 181 QPIAALSKEIDQRAEQELHPVEDRHLPVEVRPFVVAINRLLARVSQSMESQRRFVADAAH 240 Query: 240 ELRSPMTAISLQAERLEEADMSEQARQRLRALREGIDRGRNLLNQLLALAKAQSSVSAVA 299 ELRSP+TA+SLQAERL EA+MS AR+RL LR+GI+RGR+LL+QLL LAKAQS+ Sbjct: 241 ELRSPLTAMSLQAERLAEAEMSSVARERLTVLRQGIERGRSLLDQLLTLAKAQSATDLPK 300 Query: 300 TPISVQTIYRRVLEDLMPLAESKQIDIGVDGQRDARLLVGELDLFALVRNLADNAVRYTP 359 +P+SVQ+IYRRVLEDLMPLAE+K IDIGV+G DA + ELD+ A+V+NL DNA+RYTP Sbjct: 301 SPVSVQSIYRRVLEDLMPLAEAKHIDIGVEGALDAEVWASELDMIAVVKNLVDNAIRYTP 360 Query: 360 NGGKVDLALEFEDENVVLIVEDSGPGIPVVERARIFEAFHRLLGSNQIGSGLGLSIVKAI 419 GG+VDL++ + VVL ++DSGPGIP+ ER R+F+ F+R LGS QIGSGLGLSIV+ I Sbjct: 361 EGGRVDLSVGVSEGKVVLRIQDSGPGIPLAERDRVFDPFYRTLGSEQIGSGLGLSIVQTI 420 Query: 420 ADRLGASITLGFRDESDRSGLRVAVSIP 447 A+R+GA I L F D+ ++GL VAV P Sbjct: 421 ANRIGAEIRLDFSDQEKQTGLNVAVIAP 448 >ref|ZP_03268712.1| integral membrane sensor signal transduction histidine kinase [Burkholderia sp. H160] gb|EDZ99707.1| integral membrane sensor signal transduction histidine kinase [Burkholderia sp. H160] Length = 460 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 294/448 (65%), Positives = 363/448 (81%), Gaps = 1/448 (0%) Query: 1 MDGLKSRLNESVQLKLSVILCMAILLVAIVAGVFSFVSALDESHELQDDMLRQIAHLMER 60 MDGL+ RLNES+QLKLS L +AIL+VAIVAGVFSF+SALDE+HELQDD+LRQ+ LM+R Sbjct: 1 MDGLQRRLNESIQLKLSFTLALAILVVAIVAGVFSFLSALDEAHELQDDVLRQVGQLMDR 60 Query: 61 QRLSSASPVPEVSYASSNEESRVIVQHLGYS-ASKAEIDAEEALPLSSTLMDGLHDIDAA 119 QRLS P + +NEESRVIVQ LG + S ++DA LPL +TL DGLH ++ Sbjct: 61 QRLSPVPPTTDTRVKDANEESRVIVQRLGEANRSGVDVDAGGTLPLPATLSDGLHTLEVG 120 Query: 120 GENFRVLVQTMPSGERIAVAQESDFRNEIARDGALRTIMPFLLLVPVLLLIVADLIRKMF 179 GE FRVLV+T +GERI VAQE+ FRNEIARDGALRT+MPFL+LVPVLLLIVADL+RKMF Sbjct: 121 GETFRVLVKTTAAGERIGVAQEAGFRNEIARDGALRTVMPFLILVPVLLLIVADLVRKMF 180 Query: 180 RPIAALSKEVDQRQDEQLHPVEVSHFPVEVRPFAVAINRLLGRIDQSMASQRRFVADAAH 239 RPI+ALS+E+DQR D++LHPVE H P+EVRPFAVAINRLL R+ QSM SQRRFVADAAH Sbjct: 181 RPISALSREIDQRADQELHPVEDRHLPLEVRPFAVAINRLLARVGQSMESQRRFVADAAH 240 Query: 240 ELRSPMTAISLQAERLEEADMSEQARQRLRALREGIDRGRNLLNQLLALAKAQSSVSAVA 299 ELRSP+TA+SLQAERL EADMS AR+RL LR+GI+RGR+LL+QLL LA+A+S+ Sbjct: 241 ELRSPLTALSLQAERLAEADMSSLARERLTVLRQGIERGRSLLDQLLTLARAESATDLPN 300 Query: 300 TPISVQTIYRRVLEDLMPLAESKQIDIGVDGQRDARLLVGELDLFALVRNLADNAVRYTP 359 +P+SVQ++YRRVLEDLMPLAE++ IDIGV+G +DA + ELD+ A+V+NL DNA+RYTP Sbjct: 301 SPVSVQSVYRRVLEDLMPLAEARHIDIGVEGTQDAEVWASELDMIAVVKNLVDNAIRYTP 360 Query: 360 NGGKVDLALEFEDENVVLIVEDSGPGIPVVERARIFEAFHRLLGSNQIGSGLGLSIVKAI 419 GG+VDL+++ D L +ED+GPGIP+ ER R+F+ F+R LGS QIGSGLGLSIV+ I Sbjct: 361 EGGRVDLSVDVSDGKAKLRIEDNGPGIPLAERDRVFDPFYRTLGSEQIGSGLGLSIVQTI 420 Query: 420 ADRLGASITLGFRDESDRSGLRVAVSIP 447 A+R+GA I L F D + ++GL V V P Sbjct: 421 ANRIGAEIRLDFSDRAKQTGLSVTVLFP 448 >ref|YP_285503.1| sensor histidine kinase [Dechloromonas aromatica RCB] gb|AAZ47033.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal [Dechloromonas aromatica RCB] Length = 471 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 293/450 (65%), Positives = 362/450 (80%), Gaps = 5/450 (1%) Query: 1 MDGLKSRLNESVQLKLSVILCMAILLVAIVAGVFSFVSALDESHELQDDMLRQIAHLMER 60 MDG K RLNESVQ KLS L +AIL++A+VAG+FSFVSA DE+HELQDDMLRQ+A L +R Sbjct: 1 MDGFKKRLNESVQFKLSFSLSLAILVIAVVAGIFSFVSAFDEAHELQDDMLRQVAALFDR 60 Query: 61 QRLSSASPVPEVSYASSNEESRVIVQHL---GYSASKAEIDAEEALPLSSTLMDGLHDID 117 Q L A + S+EESRV+VQ+L G +A K DA LPL TL DGLH +D Sbjct: 61 QHLPLAHLGDDGRAKDSDEESRVVVQYLADDGKAAGKG--DAGVPLPLPITLPDGLHTLD 118 Query: 118 AAGENFRVLVQTMPSGERIAVAQESDFRNEIARDGALRTIMPFLLLVPVLLLIVADLIRK 177 +GE FRVLV+T +GERIAVAQE+ R+EIARD ALRT+MPFL+LVP+LLLIVADL+RK Sbjct: 119 VSGEPFRVLVKTTSNGERIAVAQETGVRDEIARDSALRTLMPFLILVPILLLIVADLVRK 178 Query: 178 MFRPIAALSKEVDQRQDEQLHPVEVSHFPVEVRPFAVAINRLLGRIDQSMASQRRFVADA 237 MFRPIA+LS E+DQR +++LHP+E SH P EVRPF VAINRLL R+DQSM +QRRFVADA Sbjct: 179 MFRPIASLSAEIDQRAEQELHPIEDSHLPAEVRPFVVAINRLLARVDQSMETQRRFVADA 238 Query: 238 AHELRSPMTAISLQAERLEEADMSEQARQRLRALREGIDRGRNLLNQLLALAKAQSSVSA 297 AHELRSP+TA+SLQAERL++ADMS+ AR+RL LR GI+RGRNLL+QLL LAKAQ+++ Sbjct: 239 AHELRSPLTALSLQAERLDQADMSDLARERLMTLRRGIERGRNLLDQLLTLAKAQAALDR 298 Query: 298 VATPISVQTIYRRVLEDLMPLAESKQIDIGVDGQRDARLLVGELDLFALVRNLADNAVRY 357 +P+SVQ +YRRVLEDLMPLAE K IDIGV+G++DA+L V ELD+ A+V+NL DNA+RY Sbjct: 299 PKSPVSVQHVYRRVLEDLMPLAEDKHIDIGVEGEQDAQLWVNELDVIAVVKNLVDNAIRY 358 Query: 358 TPNGGKVDLALEFEDENVVLIVEDSGPGIPVVERARIFEAFHRLLGSNQIGSGLGLSIVK 417 TP+GG+VDL++ E+ +L ++DSGPGI V ER R+F+ F+R LGS+Q+GSGLGLSIVK Sbjct: 359 TPDGGRVDLSVTTEEGRAILRIQDSGPGIQVTERERVFDPFYRTLGSDQVGSGLGLSIVK 418 Query: 418 AIADRLGASITLGFRDESDRSGLRVAVSIP 447 A+ DR+GA I LGF DE SGL V V +P Sbjct: 419 AVTDRIGAEIHLGFSDEVRYSGLCVRVHVP 448