BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1726.p (171 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AEG68831.1| exonuclease [Ralstonia solanacearum Po82] 195 2e-48 ref|YP_584988.1| 3'-5' Exonuclease [Cupriavidus metallidurans CH... 176 1e-42 ref|YP_003644877.1| Exonuclease RNase T and DNA polymerase III [... 173 8e-42 ref|ZP_01620114.1| Exonuclease [Lyngbya sp. PCC 8106] >gi|119456... 153 1e-35 ref|ZP_07109312.1| Exonuclease RNase T and DNA polymerase III [O... 149 1e-34 >gb|AEG68831.1| exonuclease [Ralstonia solanacearum Po82] Length = 191 Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats. Identities = 91/156 (58%), Positives = 107/156 (68%) Query: 1 MEIIEIGACWTTEGGVVLERFQHLVRPLTQPILTPFCKQLIGVTQEEVDQAPLFPVAARA 60 ME IE+GA W G VL+RFQ RPL P LTPFC L + Q +VD AP FP A A Sbjct: 22 METIEVGAVWVAPDGAVLDRFQAFSRPLINPRLTPFCSTLTNIHQTDVDSAPTFPAVAEA 81 Query: 61 LQAFVNDVASTDTVWMSWGNYDHKQLTRDAQRHGIAMPLLMQHQNAKRLFAKAQRIGKEV 120 L+AFV W SWG +DHKQL RD+ RHGI P+ + H NAKRLFAKA+RIGKEV Sbjct: 82 LRAFVARYRQPGATWASWGAWDHKQLDRDSARHGITPPIDLPHINAKRLFAKARRIGKEV 141 Query: 121 GMVRACTLTGIPLEGQHHRGLDDAVNIAKLMPWVLG 156 GM +AC L + LEG HHR LDDA+N+A+L+PWVLG Sbjct: 142 GMAKACELVSLQLEGAHHRALDDALNVARLLPWVLG 177 >ref|YP_584988.1| 3'-5' Exonuclease [Cupriavidus metallidurans CH34] gb|ABF09719.1| 3'-5' Exonuclease [Cupriavidus metallidurans CH34] Length = 194 Score = 176 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 86/169 (50%), Positives = 110/169 (65%) Query: 1 MEIIEIGACWTTEGGVVLERFQHLVRPLTQPILTPFCKQLIGVTQEEVDQAPLFPVAARA 60 ME EIGA W G VL+ FQ VRP+ P LT F L G++Q +VD APLF VAA Sbjct: 24 METAEIGAVWVRGNGTVLDHFQSFVRPVVNPQLTAFFTNLTGISQSDVDDAPLFTVAAEQ 83 Query: 61 LQAFVNDVASTDTVWMSWGNYDHKQLTRDAQRHGIAMPLLMQHQNAKRLFAKAQRIGKEV 120 L+ FV ++W+SWG +D +QL RD+ R+ IA P+ + HQN KRLFAKAQ+IGKEV Sbjct: 84 LRQFVERYQMPGSIWVSWGAWDARQLLRDSARYRIAEPIALPHQNGKRLFAKAQKIGKEV 143 Query: 121 GMVRACTLTGIPLEGQHHRGLDDAVNIAKLMPWVLGHARLSGQSQASSA 169 GM +AC L G + G HHR LDDA++I L+P+V G L Q QA+ + Sbjct: 144 GMAKACQLAGQTIAGTHHRALDDAMSIVGLLPFVFGEKLLRAQHQANHS 192 >ref|YP_003644877.1| Exonuclease RNase T and DNA polymerase III [Thiomonas intermedia K12] gb|ADG32547.1| Exonuclease RNase T and DNA polymerase III [Thiomonas intermedia K12] Length = 179 Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats. Identities = 88/156 (56%), Positives = 105/156 (67%), Gaps = 2/156 (1%) Query: 1 MEIIEIGACWTTEGGVVLERFQHLVRPLTQPILTPFCKQLIGVTQEEVDQAPLFPVAARA 60 MEIIEIGA W T G VL+ FQ LVRP+ +P LTPFC+QL + Q +VD A LFP A Sbjct: 25 MEIIEIGAVWATVEGSVLDTFQALVRPVVRPQLTPFCRQLTNIQQADVDGAELFPAVAAR 84 Query: 61 LQAFVNDVASTDTVWMSWGNYDHKQLTRDAQRHGIAMPL-LMQHQNAKRLFAKAQRIGKE 119 L +F + W SWG +D KQL RD +RHGI PL +H N KR FAK ++I KE Sbjct: 85 LASFAQRHQAPGATWGSWGQFDAKQLARDCERHGIESPLAAFEHVNLKRRFAKGRKI-KE 143 Query: 120 VGMVRACTLTGIPLEGQHHRGLDDAVNIAKLMPWVL 155 VGM RA + G+PL+G HHRGLDDA NIAKL+PW L Sbjct: 144 VGMARALQMVGLPLDGSHHRGLDDARNIAKLLPWSL 179 >ref|ZP_01620114.1| Exonuclease [Lyngbya sp. PCC 8106] gb|EAW37955.1| Exonuclease [Lyngbya sp. PCC 8106] Length = 191 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 70/161 (43%), Positives = 104/161 (64%), Gaps = 1/161 (0%) Query: 1 MEIIEIGACWT-TEGGVVLERFQHLVRPLTQPILTPFCKQLIGVTQEEVDQAPLFPVAAR 59 MEIIEIGA T+ + FQ ++P+ PILT FC+QL +TQ +V+QAP +P A + Sbjct: 29 MEIIEIGAVMVETKKLTSVNEFQTFIKPIRHPILTKFCQQLTSITQAQVEQAPHYPEAIK 88 Query: 60 ALQAFVNDVASTDTVWMSWGNYDHKQLTRDAQRHGIAMPLLMQHQNAKRLFAKAQRIGKE 119 L+ +++ + + +W SWG+YD +Q +D+Q H ++ P+ H N K++F+ +Q + Sbjct: 89 NLKNWLSQYSDSHLIWGSWGDYDRRQFDQDSQFHHVSFPIGYPHINLKKMFSTSQGLKGR 148 Query: 120 VGMVRACTLTGIPLEGQHHRGLDDAVNIAKLMPWVLGHARL 160 GM A L IPLEG HHRG+DD NIAKLMP++LG +L Sbjct: 149 YGMADALKLANIPLEGTHHRGIDDTRNIAKLMPYILGVKKL 189 >ref|ZP_07109312.1| Exonuclease RNase T and DNA polymerase III [Oscillatoria sp. PCC 6506] emb|CBN54460.1| Exonuclease RNase T and DNA polymerase III [Oscillatoria sp. PCC 6506] Length = 192 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 70/161 (43%), Positives = 104/161 (64%), Gaps = 3/161 (1%) Query: 1 MEIIEIGACWTTEGGV-VLERFQHLVRPLTQPILTPFCKQLIGVTQEEVDQAPLFPVAAR 59 MEIIEIGA + +++ FQ ++P+ PILT FCK L ++Q++VD AP +P A Sbjct: 33 MEIIEIGAVMVEPKNLTIVDEFQTFIKPVRHPILTEFCKSLTSISQKQVDLAPTYPEAIA 92 Query: 60 ALQAFVNDVASTDTVWMSWGNYDHKQLTRDAQRHGIAMPLLMQHQNAKRLFAKAQRIGKE 119 L+ +++ ++ V+ SWG+YD KQ +D+ H + P+ H N K+LF + Q + K Sbjct: 93 LLKNWLS--GYSNAVFGSWGDYDRKQFQQDSNFHKVPFPIAYPHVNLKQLFTEQQGLRKR 150 Query: 120 VGMVRACTLTGIPLEGQHHRGLDDAVNIAKLMPWVLGHARL 160 GM +A L G+PLEG HHRG+DDA NIAKL+P++LG +L Sbjct: 151 PGMAKALQLVGLPLEGTHHRGIDDARNIAKLLPYILGEKQL 191