BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1722.p (206 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775728.1| hypothetical protein Hsero_2321 [Herbaspiril... 369 e-100 ref|ZP_07676812.1| 4-carboxymuconolactone decarboxylase domain p... 305 2e-81 ref|YP_002981359.1| hypothetical protein Rpic12D_1399 [Ralstonia... 304 6e-81 ref|YP_001898909.1| hypothetical protein Rpic_1334 [Ralstonia pi... 303 1e-80 ref|YP_002496477.1| carboxymuconolactone decarboxylase [Methylob... 277 5e-73 >ref|YP_003775728.1| hypothetical protein Hsero_2321 [Herbaspirillum seropedicae SmR1] gb|ADJ63820.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 206 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 189/206 (91%), Positives = 201/206 (97%) Query: 1 MKRFLRIALASTLLSAAVAQAADRLPVIPPDQYTPEQKKAADEFLAARKVPVFGPFEPLM 60 M + L + +ASTLL+ ++AQAADRLPVIPP+QYTPEQK+AADEFLAARKVPVFGPFEPLM Sbjct: 1 MNKALTMTIASTLLAGSLAQAADRLPVIPPEQYTPEQKQAADEFLAARKVPVFGPFEPLM 60 Query: 61 HSPQVMTQARSMGDYLRYNSAIGNTLSELVILITAREWTQDYEWYVHYPIAIKAGIKPEI 120 HSPQVMTQAR+MGDYLRY+SAIGNTLSELVILITAREWTQDYEWYVHYPIAIKAGIKPEI Sbjct: 61 HSPQVMTQARAMGDYLRYHSAIGNTLSELVILITAREWTQDYEWYVHYPIAIKAGIKPEI 120 Query: 121 AAAIADGRRPEGMSEEETIVYDFSIELHRNKRVSDQTFARAEKRFGKKGVVDLTGINAYY 180 AAAIADGRRPEGMSEEETIVYDFSIELHRNKRVSDQTFARAEKRFGKKGVVDLTG+N+YY Sbjct: 121 AAAIADGRRPEGMSEEETIVYDFSIELHRNKRVSDQTFARAEKRFGKKGVVDLTGVNSYY 180 Query: 181 TLLAMQMNAAQYQAPKDAKRLVRFPE 206 TLLAMQMNAAQYQAPKDAKRLVRFPE Sbjct: 181 TLLAMQMNAAQYQAPKDAKRLVRFPE 206 >ref|ZP_07676812.1| 4-carboxymuconolactone decarboxylase domain protein [Ralstonia sp. 5_7_47FAA] gb|EFP64815.1| 4-carboxymuconolactone decarboxylase domain protein [Ralstonia sp. 5_7_47FAA] Length = 207 Score = 305 bits (782), Expect = 2e-81, Method: Composition-based stats. Identities = 153/206 (74%), Positives = 175/206 (84%) Query: 1 MKRFLRIALASTLLSAAVAQAADRLPVIPPDQYTPEQKKAADEFLAARKVPVFGPFEPLM 60 MK L + + L+ A AA+RLP IPPD+Y+ EQ KAA +F AARKVPVFGPFEPLM Sbjct: 1 MKNVLTLLSTAALVLMTSAHAAERLPTIPPDKYSAEQTKAAQDFQAARKVPVFGPFEPLM 60 Query: 61 HSPQVMTQARSMGDYLRYNSAIGNTLSELVILITAREWTQDYEWYVHYPIAIKAGIKPEI 120 HSP+VM+QAR+MGDYLRY+SAIGNTLSELVILITAREW+QDYEWYVH+PIA+KAGIKP I Sbjct: 61 HSPEVMSQARAMGDYLRYHSAIGNTLSELVILITAREWSQDYEWYVHHPIALKAGIKPGI 120 Query: 121 AAAIADGRRPEGMSEEETIVYDFSIELHRNKRVSDQTFARAEKRFGKKGVVDLTGINAYY 180 A AIADGRRP GMSE+E IVYDF+ EL RNKRVSDQT+ RAEKRFG KG+VD+TGI YY Sbjct: 121 ADAIADGRRPTGMSEDEEIVYDFATELIRNKRVSDQTYTRAEKRFGNKGIVDMTGICGYY 180 Query: 181 TLLAMQMNAAQYQAPKDAKRLVRFPE 206 TLLAM+MN AQY APK+A +L RFPE Sbjct: 181 TLLAMEMNVAQYPAPKNAAKLARFPE 206 >ref|YP_002981359.1| hypothetical protein Rpic12D_1399 [Ralstonia pickettii 12D] gb|ACS62687.1| conserved hypothetical protein [Ralstonia pickettii 12D] Length = 207 Score = 304 bits (778), Expect = 6e-81, Method: Composition-based stats. Identities = 152/206 (73%), Positives = 173/206 (83%) Query: 1 MKRFLRIALASTLLSAAVAQAADRLPVIPPDQYTPEQKKAADEFLAARKVPVFGPFEPLM 60 MK L + + ++ A AA+RLP IPPD+Y EQ KAA +F AARKVPVFGPFEPLM Sbjct: 1 MKNVLTLLSTAAMVLMTSAHAAERLPTIPPDKYNAEQTKAAQDFQAARKVPVFGPFEPLM 60 Query: 61 HSPQVMTQARSMGDYLRYNSAIGNTLSELVILITAREWTQDYEWYVHYPIAIKAGIKPEI 120 HSP+VM+QAR+MGDYLRY+SAIGNTLSELVILITAREW+QDYEWYVH+PIA+KAGIKP I Sbjct: 61 HSPEVMSQARAMGDYLRYHSAIGNTLSELVILITAREWSQDYEWYVHHPIALKAGIKPGI 120 Query: 121 AAAIADGRRPEGMSEEETIVYDFSIELHRNKRVSDQTFARAEKRFGKKGVVDLTGINAYY 180 A AIADGRRP GMSE+E IVYDF+ EL RNKRVSDQT+ RAEKRFG KG+VD+TGI YY Sbjct: 121 ADAIADGRRPTGMSEDEEIVYDFATELIRNKRVSDQTYTRAEKRFGNKGIVDMTGICGYY 180 Query: 181 TLLAMQMNAAQYQAPKDAKRLVRFPE 206 TLLAM+MN AQY APK A +L RFPE Sbjct: 181 TLLAMEMNVAQYPAPKSATKLARFPE 206 >ref|YP_001898909.1| hypothetical protein Rpic_1334 [Ralstonia pickettii 12J] gb|ACD26477.1| conserved hypothetical protein [Ralstonia pickettii 12J] Length = 207 Score = 303 bits (775), Expect = 1e-80, Method: Composition-based stats. Identities = 151/206 (73%), Positives = 174/206 (84%) Query: 1 MKRFLRIALASTLLSAAVAQAADRLPVIPPDQYTPEQKKAADEFLAARKVPVFGPFEPLM 60 MK L + + L+ A AA+RLP IPPD+Y EQ KAA +F AARKVPVFGPFEPLM Sbjct: 1 MKNVLTLLSTAALVLMTSAHAAERLPTIPPDKYNAEQTKAAQDFQAARKVPVFGPFEPLM 60 Query: 61 HSPQVMTQARSMGDYLRYNSAIGNTLSELVILITAREWTQDYEWYVHYPIAIKAGIKPEI 120 HSP+VM+QAR+MGDYLRY+SAIGNTLSELVILITAREW+QDYEWYVH+PIA+KAGIKP I Sbjct: 61 HSPEVMSQARAMGDYLRYHSAIGNTLSELVILITAREWSQDYEWYVHHPIALKAGIKPGI 120 Query: 121 AAAIADGRRPEGMSEEETIVYDFSIELHRNKRVSDQTFARAEKRFGKKGVVDLTGINAYY 180 A AIADGRRP GMSE+E IVYDF+ EL RNKRV+D+T+ RAEKRFG KG+VD+TGI YY Sbjct: 121 ADAIADGRRPTGMSEDEEIVYDFATELIRNKRVADETYTRAEKRFGNKGIVDMTGICGYY 180 Query: 181 TLLAMQMNAAQYQAPKDAKRLVRFPE 206 TLLAM+MN AQY APK+A +L RFPE Sbjct: 181 TLLAMEMNVAQYPAPKNAAKLARFPE 206 >ref|YP_002496477.1| carboxymuconolactone decarboxylase [Methylobacterium nodulans ORS 2060] gb|ACL56174.1| Carboxymuconolactone decarboxylase [Methylobacterium nodulans ORS 2060] Length = 236 Score = 277 bits (709), Expect = 5e-73, Method: Composition-based stats. Identities = 145/198 (73%), Positives = 158/198 (79%), Gaps = 1/198 (0%) Query: 9 LASTLLSAAVAQAADRLPVIPPDQYTPEQKKAADEFLAARKVPVFGPFEPLMHSPQVMTQ 68 LA LLS VA A DRLP IPPDQYTPEQKKAA+EF AARKV VFGPFEPLMHSP+VMT Sbjct: 40 LALCLLST-VALAQDRLPTIPPDQYTPEQKKAAEEFEAARKVKVFGPFEPLMHSPEVMTL 98 Query: 69 ARSMGDYLRYNSAIGNTLSELVILITAREWTQDYEWYVHYPIAIKAGIKPEIAAAIADGR 128 R+MGDYLRY IG LSELVILI AR WTQDYEWYVH PIA K GI PE+ AAI DGR Sbjct: 99 TRAMGDYLRYKPKIGTRLSELVILINARLWTQDYEWYVHAPIAAKVGIAPEVIAAIRDGR 158 Query: 129 RPEGMSEEETIVYDFSIELHRNKRVSDQTFARAEKRFGKKGVVDLTGINAYYTLLAMQMN 188 RP G+SE+E IVYDF+ EL +N+RVSD TFARAE+RFGK GVVDLT I+ YYT LAMQ+N Sbjct: 159 RPTGLSEDEEIVYDFTTELQQNRRVSDATFARAEQRFGKPGVVDLTAISGYYTFLAMQLN 218 Query: 189 AAQYQAPKDAKRLVRFPE 206 AA+Y PKD L R PE Sbjct: 219 AARYGIPKDGTPLPRLPE 236