BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1720.p         (180 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004685529.1| DNA helicase [Cupriavidus necator N-1] >gi|3...   268   2e-70
ref|YP_295979.1| WGR [Ralstonia eutropha JMP134] >gi|72118872|gb...   263   8e-69
ref|YP_726167.1| DNA helicase [Ralstonia eutropha H16] >gi|11352...   262   1e-68
ref|ZP_00945728.1| DNA helicase [Ralstonia solanacearum UW551] >...   260   5e-68
gb|AEG71890.1| conserved hypothetical protein [Ralstonia solanac...   259   1e-67

>ref|YP_004685529.1| DNA helicase [Cupriavidus necator N-1]
 gb|AEI77048.1| DNA helicase [Cupriavidus necator N-1]
          Length = 1840

 Score =  268 bits (685), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 129/170 (75%), Positives = 149/170 (87%)

Query: 1   MSLVRDYAQLLEDANGNPAFDRIFSIQPRELDTSPPAPLAPSEQWNVVSSDATQNAAVQL 60
           MSLVRDYAQLL++   NPAFDR+FSI PR+++T  PAPLAP+EQWNVV++DATQNAAV L
Sbjct: 587 MSLVRDYAQLLDEPGANPAFDRVFSIDPRDVETQAPAPLAPAEQWNVVAADATQNAAVGL 646

Query: 61  ARTQRSFIIQGPPGTGKSQTITNLIADYAGQGKRVLFVCEKRAALDVVFHRLKQSGLAQL 120
           AR+QRSFIIQGPPGTGKSQTITNLIADYAG+GKRVLFVCEKRAALDVVFHRLKQSGL  L
Sbjct: 647 ARSQRSFIIQGPPGTGKSQTITNLIADYAGRGKRVLFVCEKRAALDVVFHRLKQSGLDSL 706

Query: 121 CCLIHDSQADKKAFIADLKQCYEQWIAQPSEGERLRICRSSSGASTSSNK 170
           CCLIHDSQ DKKAFIADL+ CYEQWIAQP +G+ L   R+    + ++++
Sbjct: 707 CCLIHDSQTDKKAFIADLRACYEQWIAQPHDGDALAARRAQVAEALAAHQ 756


>ref|YP_295979.1| WGR [Ralstonia eutropha JMP134]
 gb|AAZ61135.1| WGR [Ralstonia eutropha JMP134]
          Length = 1838

 Score =  263 bits (672), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 129/170 (75%), Positives = 148/170 (87%)

Query: 1   MSLVRDYAQLLEDANGNPAFDRIFSIQPRELDTSPPAPLAPSEQWNVVSSDATQNAAVQL 60
           MSLVRDYAQLL++   NPAFDR+FSI PR+++T  PA LAPSEQWNVV++DATQNAAV L
Sbjct: 590 MSLVRDYAQLLDEPGANPAFDRVFSIDPRDVETDAPAALAPSEQWNVVAADATQNAAVGL 649

Query: 61  ARTQRSFIIQGPPGTGKSQTITNLIADYAGQGKRVLFVCEKRAALDVVFHRLKQSGLAQL 120
           AR+ RSFIIQGPPGTGKSQTITNLIADYAG+GKRVLFVCEKRAALDVVFHRL+QSGL  L
Sbjct: 650 ARSARSFIIQGPPGTGKSQTITNLIADYAGRGKRVLFVCEKRAALDVVFHRLRQSGLDSL 709

Query: 121 CCLIHDSQADKKAFIADLKQCYEQWIAQPSEGERLRICRSSSGASTSSNK 170
           CCLIHDSQADKKAFIADL+ CYEQWIAQP +G+ L   R+    + S+++
Sbjct: 710 CCLIHDSQADKKAFIADLRACYEQWIAQPHDGDALAARRTQVVDALSAHQ 759


>ref|YP_726167.1| DNA helicase [Ralstonia eutropha H16]
 emb|CAJ92799.1| DNA helicase [Ralstonia eutropha H16]
          Length = 1840

 Score =  262 bits (670), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 128/160 (80%), Positives = 142/160 (88%)

Query: 1   MSLVRDYAQLLEDANGNPAFDRIFSIQPRELDTSPPAPLAPSEQWNVVSSDATQNAAVQL 60
           MSLVRDYAQLL++   NPAFDR+FSI PR+++T  PAPLAP+EQWNVV +DATQNAAV L
Sbjct: 587 MSLVRDYAQLLDEPGANPAFDRVFSIDPRDVETQVPAPLAPAEQWNVVGADATQNAAVGL 646

Query: 61  ARTQRSFIIQGPPGTGKSQTITNLIADYAGQGKRVLFVCEKRAALDVVFHRLKQSGLAQL 120
           AR+QRSFIIQGPPGTGKSQTITNLIADYAG+GKRVLFVCEKRAALDVVFHRLKQSGL  L
Sbjct: 647 ARSQRSFIIQGPPGTGKSQTITNLIADYAGRGKRVLFVCEKRAALDVVFHRLKQSGLDSL 706

Query: 121 CCLIHDSQADKKAFIADLKQCYEQWIAQPSEGERLRICRS 160
           C LIHDSQ DKKAFIADL+ CYEQWIAQP +G+ L   R+
Sbjct: 707 CSLIHDSQTDKKAFIADLRACYEQWIAQPHDGDALAARRT 746


>ref|ZP_00945728.1| DNA helicase [Ralstonia solanacearum UW551]
 ref|YP_002257720.1| hypothetical protein RSIPO_04022 [Ralstonia solanacearum IPO1609]
 gb|EAP71764.1| DNA helicase [Ralstonia solanacearum UW551]
 emb|CAQ59607.1| conserved hypothetical protein [Ralstonia solanacearum IPO1609]
          Length = 1833

 Score =  260 bits (665), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 127/165 (76%), Positives = 143/165 (86%)

Query: 1   MSLVRDYAQLLEDANGNPAFDRIFSIQPRELDTSPPAPLAPSEQWNVVSSDATQNAAVQL 60
           MSLVRDY QLLED   NPAFDR+FSI+PRE++T  PAPL+ +EQW+VV+SDATQNAAV L
Sbjct: 577 MSLVRDYTQLLEDPKPNPAFDRVFSIEPREVETQAPAPLSANEQWSVVASDATQNAAVGL 636

Query: 61  ARTQRSFIIQGPPGTGKSQTITNLIADYAGQGKRVLFVCEKRAALDVVFHRLKQSGLAQL 120
           AR+QRSFIIQGPPGTGKSQTITNLIADYAG+GKRVLFVCEKRAALDVVFHRLKQSGL  L
Sbjct: 637 ARSQRSFIIQGPPGTGKSQTITNLIADYAGRGKRVLFVCEKRAALDVVFHRLKQSGLDSL 696

Query: 121 CCLIHDSQADKKAFIADLKQCYEQWIAQPSEGERLRICRSSSGAS 165
           CCLIHDSQ DKKAF+ADL+ CYE WIAQP + + L   R+   A+
Sbjct: 697 CCLIHDSQTDKKAFVADLRTCYEHWIAQPHDSDTLTARRTQLAAT 741


>gb|AEG71890.1| conserved hypothetical protein [Ralstonia solanacearum Po82]
          Length = 1833

 Score =  259 bits (663), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 127/165 (76%), Positives = 141/165 (85%)

Query: 1   MSLVRDYAQLLEDANGNPAFDRIFSIQPRELDTSPPAPLAPSEQWNVVSSDATQNAAVQL 60
           MSLVRDY QLLED   NPAFDR+FSI+PRE++T  PAPL   EQW+VV+SDATQNAAV L
Sbjct: 577 MSLVRDYTQLLEDPKPNPAFDRVFSIEPREVETQAPAPLPADEQWSVVASDATQNAAVGL 636

Query: 61  ARTQRSFIIQGPPGTGKSQTITNLIADYAGQGKRVLFVCEKRAALDVVFHRLKQSGLAQL 120
           AR+QRSFIIQGPPGTGKSQTITNLIADYAG+GKRVLFVCEKRAALDVVFHRLKQSGL  L
Sbjct: 637 ARSQRSFIIQGPPGTGKSQTITNLIADYAGRGKRVLFVCEKRAALDVVFHRLKQSGLDSL 696

Query: 121 CCLIHDSQADKKAFIADLKQCYEQWIAQPSEGERLRICRSSSGAS 165
           CCLIHDSQ DKKAF+ADL+ CYE WIAQP + + L   R+   A+
Sbjct: 697 CCLIHDSQTDKKAFVADLRTCYEHWIAQPHDSDALTARRTQLAAA 741