BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1719.p (506 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_726167.1| DNA helicase [Ralstonia eutropha H16] >gi|11352... 675 0.0 ref|ZP_00945728.1| DNA helicase [Ralstonia solanacearum UW551] >... 670 0.0 emb|CAQ36836.1| conserved hypothetical protein [Ralstonia solana... 669 0.0 gb|AEG71890.1| conserved hypothetical protein [Ralstonia solanac... 668 0.0 ref|YP_295979.1| WGR [Ralstonia eutropha JMP134] >gi|72118872|gb... 661 0.0 >ref|YP_726167.1| DNA helicase [Ralstonia eutropha H16] emb|CAJ92799.1| DNA helicase [Ralstonia eutropha H16] Length = 1840 Score = 675 bits (1741), Expect = 0.0, Method: Composition-based stats. Identities = 343/469 (73%), Positives = 394/469 (84%) Query: 14 LRELIDAQAGKLLSNDDLLVLMLPLFAQVAELHAQGRVAALSEDTLLVDQQGGLSLRHPA 73 LR LI+AQAG L DD+LVL+LPLFAQVA LHAQGRVAAL D++LVD+ G L LR P Sbjct: 24 LRALIEAQAGAALPTDDVLVLVLPLFAQVATLHAQGRVAALDRDSILVDEDGALRLRRPD 83 Query: 74 GQAPQMNIDAVHALQPHLSSGLSIVGALQLDHHADGLRTQHDLALLEDESAPMTRPVYLS 133 G+AP M+I AVH +QPH +SGL+IVGALQL H DG R Q DLAL D +AP+ RPVYL Sbjct: 84 GEAPVMDIGAVHRVQPHPASGLNIVGALQLGHADDGQRDQADLALQLDATAPVARPVYLP 143 Query: 134 GPKSWEIALGHHDEITDVFQLGMLLGGLACGLDLAEQDDLRLFVRHRHNLFELHDKLSPI 193 GP SWE +GHHDEI D+F LGM+L LACGLD A++DDLR FV HR NLF LH++L PI Sbjct: 144 GPASWERLVGHHDEIGDIFLLGMVLASLACGLDFADEDDLRSFVAHRRNLFLLHERLHPI 203 Query: 194 IASVIVEMTELNRHDRATDVAALTLRLRTWRDQPVALDVERALAGKDGVAPRRIAVLSHL 253 +A+VIVEMTE+NRHDRATDVAAL RLRTWRDQP+ LDVERALAG G PRR AVL+HL Sbjct: 204 VAAVIVEMTEINRHDRATDVAALATRLRTWRDQPLGLDVERALAGTTGATPRRAAVLTHL 263 Query: 254 RDRLFDLSRRNRLLYFRPTSANVNLTVASVPLMLNVDSIKPEQICTWGGPFAEQLVAGKP 313 RDRLFDLSRRNRLL+FRPT+ +VN+TVASVPLML ++S++PE ICTWGGPFA LVAGKP Sbjct: 264 RDRLFDLSRRNRLLHFRPTAVSVNVTVASVPLMLQIESVRPEHICTWGGPFAADLVAGKP 323 Query: 314 ISLQNWLRFDDQLYLPATLDKLISETRHDRAEFGFSNLRLVVAFLRWHNLKEAPDERIVT 373 +SLQ WLRFDDQ YLPA+LD+LI+ETR DRAE+GFSNLRLVVAFLRWHNLKEAPDERIVT Sbjct: 324 VSLQRWLRFDDQPYLPASLDRLIAETRRDRAEYGFSNLRLVVAFLRWHNLKEAPDERIVT 383 Query: 374 PLLWLPVELVKRKGVRDQYLIQCSTSEAEFNPVLRHCLSQLYDIALPETIDLAKTSLQQI 433 PLLWLPVELVKRKGVRDQY+IQC+ EAEFNPVLRH LSQLYDI L ET+DL K SL++I Sbjct: 384 PLLWLPVELVKRKGVRDQYVIQCAGGEAEFNPVLRHYLSQLYDIRLDETVDLGKISLEEI 443 Query: 434 HEDLRNKIHQSEPAVELRLVEKASVRLVRQKAMQRMQQYTRRLGAAGAA 482 H + +I +SEP+VELRLV+KA+VRLVRQKA+QRMQQ+ RR AA Sbjct: 444 HAGILAQIRRSEPSVELRLVDKAAVRLVRQKALQRMQQFQRRKPGPAAA 492 >ref|ZP_00945728.1| DNA helicase [Ralstonia solanacearum UW551] ref|YP_002257720.1| hypothetical protein RSIPO_04022 [Ralstonia solanacearum IPO1609] gb|EAP71764.1| DNA helicase [Ralstonia solanacearum UW551] emb|CAQ59607.1| conserved hypothetical protein [Ralstonia solanacearum IPO1609] Length = 1833 Score = 670 bits (1728), Expect = 0.0, Method: Composition-based stats. Identities = 340/482 (70%), Positives = 399/482 (82%), Gaps = 3/482 (0%) Query: 13 SLRELIDAQAGKLLSNDDLLVLMLPLFAQVAELHAQGRVAALSEDTLLVDQQGGLSLRHP 72 +LR LI+AQAG L DD++VL LPLF QVA LHAQG+VA+L+ D++LV++ G L LR P Sbjct: 13 TLRTLIEAQAGAALPTDDVVVLSLPLFQQVAALHAQGKVASLNTDSILVNEDGSLGLRRP 72 Query: 73 AGQAPQMNIDAVHALQPHLSSGLSIVGALQLDHHADGLRTQHDLALLEDESAPMTRPVYL 132 G+ P M+I AV +QPH +SGL+IVG LQ H DGL+ DL+L D SAP+ RPVYL Sbjct: 73 DGETPTMDIGAVQRVQPHPASGLNIVGTLQRTHTDDGLQEVRDLSLQLDLSAPIVRPVYL 132 Query: 133 SGPKSWEIALGHHDEITDVFQLGMLLGGLACGLDLAEQDDLRLFVRHRHNLFELHDKLSP 192 GP SWE+ LGHHDEI+D+F LGM L LACGLD A++DDLR FV HR NLF L D+L P Sbjct: 133 PGPASWELQLGHHDEISDLFLLGMALASLACGLDFADEDDLRSFVAHRRNLFLLRDRLHP 192 Query: 193 IIASVIVEMTELNRHDRATDVAALTLRLRTWRDQPVALDVERALAGKDGVAPRRIAVLSH 252 I+A+VIVEMTE+NRHDRATDVAAL RLRTWR+QP+ LDVERALAG G APRR AVL+H Sbjct: 193 IVAAVIVEMTEINRHDRATDVAALATRLRTWREQPLGLDVERALAGASGAAPRRTAVLAH 252 Query: 253 LRDRLFDLSRRNRLLYFRPTSANVNLTVASVPLMLNVDSIKPEQICTWGGPFAEQLVAGK 312 LRDRLFDLSRRNRLLYFRPT+ANVNLTVASVPLML ++S++PE ICTWGGPFA+ + AG+ Sbjct: 253 LRDRLFDLSRRNRLLYFRPTAANVNLTVASVPLMLQIESVRPEHICTWGGPFADDVTAGR 312 Query: 313 PISLQNWLRFDDQLYLPATLDKLISETRHDRAEFGFSNLRLVVAFLRWHNLKEAPDERIV 372 P+SLQ WLRFDDQ YLPA LD+LI++TR DRAE+GFSNLRLV+AFLRWHNLKEAPDERI+ Sbjct: 313 PVSLQQWLRFDDQPYLPAVLDRLIADTRRDRAEYGFSNLRLVIAFLRWHNLKEAPDERIL 372 Query: 373 TPLLWLPVELVKRKGVRDQYLIQCSTSEAEFNPVLRHCLSQLYDIALPETIDLAKTSLQQ 432 TPLLWLPVELVKRKGVRDQY+IQC +AEFNPVLRH LSQLYDI LPET+DL KTSL + Sbjct: 373 TPLLWLPVELVKRKGVRDQYVIQCENGDAEFNPVLRHHLSQLYDIRLPETVDLRKTSLAE 432 Query: 433 IHEDLRNKIHQSEPAVELRLVEKASVRLVRQKAMQRMQQYTRRLGAAGAAEGHATHAAIA 492 +H D+ ++I +SEPAVELRLVEKA++RLVRQKAMQRMQQ+ RR GAA+ THA Sbjct: 433 LHADILSQIRRSEPAVELRLVEKAAIRLVRQKAMQRMQQFRRR--KPGAAQ-RTTHAGWL 489 Query: 493 QP 494 P Sbjct: 490 PP 491 >emb|CAQ36836.1| conserved hypothetical protein [Ralstonia solanacearum MolK2] Length = 1833 Score = 669 bits (1726), Expect = 0.0, Method: Composition-based stats. Identities = 340/482 (70%), Positives = 399/482 (82%), Gaps = 3/482 (0%) Query: 13 SLRELIDAQAGKLLSNDDLLVLMLPLFAQVAELHAQGRVAALSEDTLLVDQQGGLSLRHP 72 +LR LI+AQAG L DD++VL LPLF QVA LHAQG+VA+L+ D++LV++ G L LR P Sbjct: 13 TLRTLIEAQAGAALPTDDVVVLSLPLFQQVAALHAQGKVASLNTDSILVNEDGSLGLRRP 72 Query: 73 AGQAPQMNIDAVHALQPHLSSGLSIVGALQLDHHADGLRTQHDLALLEDESAPMTRPVYL 132 G+ P M+I AV +QPH +SGL+IVG LQ H DGL+ DL+L D SAP+ RPVYL Sbjct: 73 DGETPTMDIGAVQRVQPHPASGLNIVGTLQRTHTDDGLQEVRDLSLQLDLSAPIVRPVYL 132 Query: 133 SGPKSWEIALGHHDEITDVFQLGMLLGGLACGLDLAEQDDLRLFVRHRHNLFELHDKLSP 192 GP SWE+ LGHHDEI+D+F LGM L LACGLD A++DDLR FV HR NLF L D+L P Sbjct: 133 PGPASWELQLGHHDEISDLFLLGMALASLACGLDFADEDDLRSFVAHRRNLFLLCDRLHP 192 Query: 193 IIASVIVEMTELNRHDRATDVAALTLRLRTWRDQPVALDVERALAGKDGVAPRRIAVLSH 252 I+A+VIVEMTE+NRHDRATDVAAL RLRTWR+QP+ LDVERALAG G APRR AVL+H Sbjct: 193 IVAAVIVEMTEINRHDRATDVAALATRLRTWREQPLGLDVERALAGASGAAPRRTAVLAH 252 Query: 253 LRDRLFDLSRRNRLLYFRPTSANVNLTVASVPLMLNVDSIKPEQICTWGGPFAEQLVAGK 312 LRDRLFDLSRRNRLLYFRPT+ANVNLTVASVPLML ++S++PE ICTWGGPFA+ + AG+ Sbjct: 253 LRDRLFDLSRRNRLLYFRPTAANVNLTVASVPLMLQIESVRPEHICTWGGPFADDVTAGR 312 Query: 313 PISLQNWLRFDDQLYLPATLDKLISETRHDRAEFGFSNLRLVVAFLRWHNLKEAPDERIV 372 P+SLQ WLRFDDQ YLPA LD+LI++TR DRAE+GFSNLRLV+AFLRWHNLKEAPDERI+ Sbjct: 313 PVSLQQWLRFDDQPYLPAALDRLIADTRRDRAEYGFSNLRLVIAFLRWHNLKEAPDERIL 372 Query: 373 TPLLWLPVELVKRKGVRDQYLIQCSTSEAEFNPVLRHCLSQLYDIALPETIDLAKTSLQQ 432 TPLLWLPVELVKRKGVRDQY+IQC +AEFNPVLRH LSQLYDI LPET+DL KTSL + Sbjct: 373 TPLLWLPVELVKRKGVRDQYVIQCENGDAEFNPVLRHHLSQLYDIRLPETVDLRKTSLAE 432 Query: 433 IHEDLRNKIHQSEPAVELRLVEKASVRLVRQKAMQRMQQYTRRLGAAGAAEGHATHAAIA 492 +H D+ ++I +SEPAVELRLVEKA++RLVRQKAMQRMQQ+ RR GAA+ THA Sbjct: 433 LHADILSQIRRSEPAVELRLVEKAAIRLVRQKAMQRMQQFRRR--KPGAAQ-RTTHAGWL 489 Query: 493 QP 494 P Sbjct: 490 PP 491 >gb|AEG71890.1| conserved hypothetical protein [Ralstonia solanacearum Po82] Length = 1833 Score = 668 bits (1724), Expect = 0.0, Method: Composition-based stats. Identities = 340/482 (70%), Positives = 398/482 (82%), Gaps = 3/482 (0%) Query: 13 SLRELIDAQAGKLLSNDDLLVLMLPLFAQVAELHAQGRVAALSEDTLLVDQQGGLSLRHP 72 +LR LI+AQAG L DD++VL LPLF QVA LHAQG+VA+L+ D++LV++ G L LR P Sbjct: 13 TLRTLIEAQAGAALPTDDVVVLSLPLFQQVAALHAQGKVASLNTDSILVNEDGSLGLRRP 72 Query: 73 AGQAPQMNIDAVHALQPHLSSGLSIVGALQLDHHADGLRTQHDLALLEDESAPMTRPVYL 132 G AP M+I AV +QPH +SGL+IVG LQ H DG + DL+L D SAP+ RPVYL Sbjct: 73 DGDAPTMDIGAVQRVQPHPASGLNIVGTLQRTHTDDGHQEVRDLSLQLDPSAPVERPVYL 132 Query: 133 SGPKSWEIALGHHDEITDVFQLGMLLGGLACGLDLAEQDDLRLFVRHRHNLFELHDKLSP 192 GP SWE+ LGHHDEI+D+F LGM L LACGLD A++DDLR FV HR NLF L D+L P Sbjct: 133 PGPASWELQLGHHDEISDLFLLGMALASLACGLDFADEDDLRSFVAHRRNLFLLCDRLHP 192 Query: 193 IIASVIVEMTELNRHDRATDVAALTLRLRTWRDQPVALDVERALAGKDGVAPRRIAVLSH 252 I+A+VIVEMTE+NRHDRATDVAAL RLRTWR+QP+ LDVERALAG G APRR AVL+H Sbjct: 193 IVAAVIVEMTEINRHDRATDVAALATRLRTWREQPLGLDVERALAGASGAAPRRTAVLAH 252 Query: 253 LRDRLFDLSRRNRLLYFRPTSANVNLTVASVPLMLNVDSIKPEQICTWGGPFAEQLVAGK 312 LRDRLFDLSRRNRLLYFRPT+ANVNLTVASVPLML ++S++PE ICTWGGPFA+ + AG+ Sbjct: 253 LRDRLFDLSRRNRLLYFRPTAANVNLTVASVPLMLQIESVRPEHICTWGGPFADDVTAGR 312 Query: 313 PISLQNWLRFDDQLYLPATLDKLISETRHDRAEFGFSNLRLVVAFLRWHNLKEAPDERIV 372 P+SLQ WLRFDDQ YLPA LD+LI++TR DRAE+GFSNLRLV+AFLRWHNLKEAPDERI+ Sbjct: 313 PVSLQQWLRFDDQPYLPAVLDRLIADTRRDRAEYGFSNLRLVIAFLRWHNLKEAPDERIL 372 Query: 373 TPLLWLPVELVKRKGVRDQYLIQCSTSEAEFNPVLRHCLSQLYDIALPETIDLAKTSLQQ 432 TPLLWLPVELVKRKGVRDQY+IQC +AEFNPVLRH LSQLYDI LPET+DL KTSL + Sbjct: 373 TPLLWLPVELVKRKGVRDQYVIQCENGDAEFNPVLRHHLSQLYDIRLPETVDLRKTSLAE 432 Query: 433 IHEDLRNKIHQSEPAVELRLVEKASVRLVRQKAMQRMQQYTRRLGAAGAAEGHATHAAIA 492 +H D+ ++I +SEPAVELRLVEKA++RLVRQKAMQRMQQ+ RR GAA+ THA Sbjct: 433 LHADILSQIRRSEPAVELRLVEKAAIRLVRQKAMQRMQQFRRR--KPGAAQ-RTTHAGWL 489 Query: 493 QP 494 P Sbjct: 490 PP 491 >ref|YP_295979.1| WGR [Ralstonia eutropha JMP134] gb|AAZ61135.1| WGR [Ralstonia eutropha JMP134] Length = 1838 Score = 661 bits (1706), Expect = 0.0, Method: Composition-based stats. Identities = 337/470 (71%), Positives = 392/470 (83%) Query: 13 SLRELIDAQAGKLLSNDDLLVLMLPLFAQVAELHAQGRVAALSEDTLLVDQQGGLSLRHP 72 +LR LIDAQAG L+ DD+LVL+LPLF+QVA LHA+GRVAAL D++LVD++G L LR P Sbjct: 26 TLRALIDAQAGAALATDDVLVLVLPLFSQVAALHARGRVAALDPDSILVDEEGALRLRRP 85 Query: 73 AGQAPQMNIDAVHALQPHLSSGLSIVGALQLDHHADGLRTQHDLALLEDESAPMTRPVYL 132 G+ P M+I A+H +QPH +S L+IVGAL+L H G R Q DLAL D +AP+ RPV+L Sbjct: 86 DGEMPAMDIGAIHRVQPHPTSALNIVGALRLGHADSGHRDQADLALQLDLAAPIERPVFL 145 Query: 133 SGPKSWEIALGHHDEITDVFQLGMLLGGLACGLDLAEQDDLRLFVRHRHNLFELHDKLSP 192 GP SWE +GHHDEI DVF LGM L LACGLD ++DDLR FV HR NLF LH++L P Sbjct: 146 PGPASWEKLIGHHDEIGDVFLLGMALASLACGLDFTDEDDLRSFVAHRRNLFLLHERLHP 205 Query: 193 IIASVIVEMTELNRHDRATDVAALTLRLRTWRDQPVALDVERALAGKDGVAPRRIAVLSH 252 I+A+VIVEMTE+NRHDRATDVAA RLRTWRDQP ALDVERALAG G PRR AVL+H Sbjct: 206 IVAAVIVEMTEINRHDRATDVAAQATRLRTWRDQPAALDVERALAGTAGATPRRAAVLTH 265 Query: 253 LRDRLFDLSRRNRLLYFRPTSANVNLTVASVPLMLNVDSIKPEQICTWGGPFAEQLVAGK 312 LRDRLFDLSRRNRLL+FRPT+A+VNLTVASVPLML ++S++PE ICTWGGPFA LVAGK Sbjct: 266 LRDRLFDLSRRNRLLHFRPTAASVNLTVASVPLMLQIESVRPEHICTWGGPFAADLVAGK 325 Query: 313 PISLQNWLRFDDQLYLPATLDKLISETRHDRAEFGFSNLRLVVAFLRWHNLKEAPDERIV 372 P+SLQ WLRFDDQ YLPA+LD+LI+ETR +RAE+GFSNLRLVVAFLRWHNLKEAPDERIV Sbjct: 326 PVSLQQWLRFDDQPYLPASLDRLIAETRRERAEYGFSNLRLVVAFLRWHNLKEAPDERIV 385 Query: 373 TPLLWLPVELVKRKGVRDQYLIQCSTSEAEFNPVLRHCLSQLYDIALPETIDLAKTSLQQ 432 TPLLWLPVELVKRKGVRDQY+IQ + EAEFNPVLRH L+QLY I L ET+DL KTSL++ Sbjct: 386 TPLLWLPVELVKRKGVRDQYVIQSAGGEAEFNPVLRHYLNQLYGIQLDETVDLGKTSLEE 445 Query: 433 IHEDLRNKIHQSEPAVELRLVEKASVRLVRQKAMQRMQQYTRRLGAAGAA 482 IH + +I QSEP+VELRLV+KA+VRLVRQKA+QRMQQ+ RR A AA Sbjct: 446 IHAGILAQIRQSEPSVELRLVDKAAVRLVRQKALQRMQQFQRRKPGAAAA 495