BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1715.p (549 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775726.1| NADH:ubiquinone oxidoreductase subunit L/Mul... 563 e-158 ref|ZP_08276229.1| NADH dehydrogenase, subunit 5 [Oxalobacterace... 483 e-134 dbj|BAK10990.1| NADH-quinone oxidoreductase chain L NuoL [Pantoe... 479 e-133 ref|YP_003051861.1| NADH dehydrogenase subunit L [Methylovorus g... 462 e-128 ref|YP_004040430.1| NADH/ubiquinone/plastoquinone (complex i) [M... 460 e-127 >ref|YP_003775726.1| NADH:ubiquinone oxidoreductase subunit L/Multisubunit Na+/H+ antiporter MnhA subunit [Herbaspirillum seropedicae SmR1] gb|ADJ63818.1| NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 563 bits (1452), Expect = e-158, Method: Composition-based stats. Identities = 372/520 (71%), Positives = 421/520 (80%), Gaps = 3/520 (0%) Query: 28 LVMTTIPLISCSAWAPPALTMAAALALCLSRLAPPRVWTLFQSLSLLALLLTLFNLVMAR 87 ++ T L S WAPPA ALAL L+R P +W LFQ+ S+LAL L + +L +AR Sbjct: 14 IMFTLSHLTSLLPWAPPAAMFVTALALMLARPTPQGLWRLFQATSMLALTLAVLSLCLAR 73 Query: 88 DSAPWPGVLHPSTLGLVLALLVQGLGTVIGSFSARYLQGEAGQRQYAAALALVLTAVHLL 147 + PWPGVL S +GLVLA+LVQGLG VIG+FSARYLQGE GQRQYA ALA VLTAVHLL Sbjct: 74 GATPWPGVLQVSVIGLVLAVLVQGLGAVIGAFSARYLQGEGGQRQYAVALAAVLTAVHLL 133 Query: 148 LLADHWVVLIAAWAVVGLALQRLLCFYPERPFARLASYKKSIADRIADCLLIAAAALAWT 207 LLADHW+VLIAAWA VGLAL+ LLCFYPERPFARLA+YKK IADR+AD LL AA LAW+ Sbjct: 134 LLADHWLVLIAAWAAVGLALEHLLCFYPERPFARLAAYKKRIADRLADLLLGVAALLAWS 193 Query: 208 TVGSGSFSDLWAYLSQHGMSTSLQVSALCLTLAVILRTALLPVHGWLIQVMEAPTPVSAL 267 GSGS S LW +L+ HGMS LQVSALC+ LAVILRTALLPVHGWLIQVMEAPTPVSAL Sbjct: 194 ATGSGSLSALWQHLAAHGMSAGLQVSALCVVLAVILRTALLPVHGWLIQVMEAPTPVSAL 253 Query: 268 LHAGVVNLGGFVLVRFAPLLEQAVPARSVLLLVSAGTVLLAGLVMLTRISIKVKLAWSTV 327 LHAGVVNLGGFVL+RFAPLL+QA+PARSVLLL++ TVLLAG+VMLTRISIKV+LAWSTV Sbjct: 254 LHAGVVNLGGFVLIRFAPLLQQAIPARSVLLLMAVATVLLAGMVMLTRISIKVRLAWSTV 313 Query: 328 AQMGFMLLECAAGLYLFAALHLIGHSLYKAHAFLSASSVVRETRLSALHSPALPSAWSVI 387 AQMGFMLLECAAGLY FAALHLIGHSLYKAHAFLSASSVVRETRL ALH A PSA SVI Sbjct: 314 AQMGFMLLECAAGLYTFAALHLIGHSLYKAHAFLSASSVVRETRLQALHDKAQPSAASVI 373 Query: 388 LAPMVSIALVLGLHSLSPHAAWPWWWSGILGLAWAPLLW---RSTAKGSGGLRGWLLGLL 444 +AP+ S A+VL L +L H WPWWWS +LGLAWAPLLW ST + LR WLLGL Sbjct: 374 VAPLASSAVVLALQTLHAHTGWPWWWSVVLGLAWAPLLWLPQASTVSTAMRLRSWLLGLT 433 Query: 445 GAAGLTLAALVAHLLPLHVNDYPRAVFGVTALLAMLALYVCMGLLQLAPQSMAAWRRRSY 504 GAAGLT+AA++ HLLPL ++D+ + +FG+ L MLALY C+ LL + PQ+M AWRRRSY Sbjct: 434 GAAGLTVAAMLLHLLPLGLDDFAQPLFGMATLAGMLALYGCVALLLVRPQAMTAWRRRSY 493 Query: 505 AGFYLDEAYTRLALQLWPSNWAPSARRAAAEQQVNNLAAD 544 AGFYLDEAYTRLALQLWP+ WAP ARRA + LA+D Sbjct: 494 AGFYLDEAYTRLALQLWPARWAPQARRAPHRAPPSTLASD 533 >ref|ZP_08276229.1| NADH dehydrogenase, subunit 5 [Oxalobacteraceae bacterium IMCC9480] gb|EGF30299.1| NADH dehydrogenase, subunit 5 [Oxalobacteraceae bacterium IMCC9480] Length = 519 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 299/499 (59%), Positives = 369/499 (73%), Gaps = 6/499 (1%) Query: 35 LISCSAWAPPALTMAAALALCLSRLAPPRVWTLFQSLSLLALLLTLFNLVMARDSAPWPG 94 L + A P L + L L L R+W +F LS AL L + + + Sbjct: 5 LFTIGALMPAMLMLTGMLLSLLPALPVGRLWRIFMGLSSAALACALVSAGAGQHFPEFHP 64 Query: 95 VLHPSTLGLVLALLVQGLGTVIGSFSARYLQGEAGQRQYAAALALVLTAVHLLLLADHWV 154 ST G V+ALLVQ L ++I +FSARYL+GEAGQR++ LA V+TAVHLLL+ADHWV Sbjct: 65 WFQASTFGFVMALLVQLLCSIIAAFSARYLEGEAGQRRFVTGLAGVMTAVHLLLMADHWV 124 Query: 155 VLIAAWAVVGLALQRLLCFYPERPFARLASYKKSIADRIADCLLIAAAALAWTTVGSGSF 214 +LIAAWA+VG+ALQ+LLCFYP+RPFA LA++KK IADRIAD LLI+AAALAW++VGSGS Sbjct: 125 ILIAAWALVGIALQQLLCFYPDRPFALLAAHKKHIADRIADVLLISAAALAWSSVGSGSL 184 Query: 215 SDLWAYLSQHGMSTSLQVSALCLTLAVILRTALLPVHGWLIQVMEAPTPVSALLHAGVVN 274 S LWA+L+ HGMS +LQ SA+CL LAV+LRTALLPVHGWLIQVMEAPTPVSALLHAGVVN Sbjct: 185 SALWAHLALHGMSITLQFSAICLVLAVVLRTALLPVHGWLIQVMEAPTPVSALLHAGVVN 244 Query: 275 LGGFVLVRFAPLLEQAVPARSVLLLVSAGTVLLAGLVMLTRISIKVKLAWSTVAQMGFML 334 LGGFVL+RFAPLLEQA+PAR++L++ + +LAGLVMLTRISIKV+LAWST AQMGFM+ Sbjct: 245 LGGFVLIRFAPLLEQAMPARTLLMVFGLVSAVLAGLVMLTRISIKVRLAWSTTAQMGFMV 304 Query: 335 LECAAGLYLFAALHLIGHSLYKAHAFLSASSVVRETRLSALHSPALPSAWSVILAPMVSI 394 LEC GLY AALHLIGHSLYKAH+FLSAS++VR+TRL +H P S++LAP +++ Sbjct: 305 LECGLGLYSLAALHLIGHSLYKAHSFLSASTIVRQTRLQVMHGAESPIPLSLLLAPAMAV 364 Query: 395 ALVLGLHSLSPHAAWPWWWSGILGLAWAPLLWRSTAKGSGGLRGWLL----GLLGAAGLT 450 VL + S + AWPWWWS ILGLAWAPLLW + S +R L G+L GLT Sbjct: 365 PTVLLIQSSFGNGAWPWWWSVILGLAWAPLLWLPAQRSS--VRAICLHACAGVLMVGGLT 422 Query: 451 LAALVAHLLPLHVNDYPRAVFGVTALLAMLALYVCMGLLQLAPQSMAAWRRRSYAGFYLD 510 A L+AH +PL ++D P + G+ AL+ M LY+ + +LQL P ++ WRR SYAGFYLD Sbjct: 423 GATLLAHAVPLGIHDTPNHLLGIIALIGMAELYLSLVVLQLRPHTLRGWRRWSYAGFYLD 482 Query: 511 EAYTRLALQLWPSNWAPSA 529 E TRLALQ WP++W P A Sbjct: 483 EITTRLALQYWPASWIPLA 501 >dbj|BAK10990.1| NADH-quinone oxidoreductase chain L NuoL [Pantoea ananatis AJ13355] Length = 563 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 309/527 (58%), Positives = 379/527 (71%), Gaps = 3/527 (0%) Query: 3 EFVLINVIYRTIDGKHHDAIPMHEVLVMTTIPLISCSAWAPPALTMAAALALC-LSRLAP 61 +F+ IN+ YR + K H +H+ M + ++ + PA+ MA L LS ++ Sbjct: 16 QFIQINIFYRIVTVKEHRLSHIHKGYAMNILEVLYLVCFLAPAVLMAGLAGLTRLSGMST 75 Query: 62 PRVWTLFQSLSLLALLLTLFNLVMARDSAPWPGVLHPSTLGLVLALLVQGLGTVIGSFSA 121 +W + Q +S A+ +L A WPG++ +T GLVLALLVQ LG VI SFS Sbjct: 76 TALWRVLQIVSYGAIAFAGVSLAAGTSGAQWPGLVKATTFGLVLALLVQLLGKVIASFSV 135 Query: 122 RYLQGEAGQRQYAAALALVLTAVHLLLLADHWVVLIAAWAVVGLALQRLLCFYPERPFAR 181 RYL+GEA QR+Y AL+ VL +VHLLLLAD+W++LIAAWA VGLALQ+LLCFYP+RPFA Sbjct: 136 RYLEGEANQRRYIGALSAVLGSVHLLLLADNWLLLIAAWAAVGLALQQLLCFYPDRPFAL 195 Query: 182 LASYKKSIADRIADCLLIAAAALAWTTVGSGSFSDLWAYLSQHGMSTSLQVSALCLTLAV 241 A++KK IADRIAD +L+ A+ALAW VGS S S LWA+++Q G S LQ SA+ L +AV Sbjct: 196 FAAHKKYIADRIADVMLLGASALAWWEVGSFSLSALWAHIAQQGASVPLQASAVLLVMAV 255 Query: 242 ILRTALLPVHGWLIQVMEAPTPVSALLHAGVVNLGGFVLVRFAPLLEQAVPARSVLLLVS 301 ILRTALLPVHGWLIQVMEAPTPVSALLHAGVVNLGGFVL+RFAP+LEQA AR +LL+ + Sbjct: 256 ILRTALLPVHGWLIQVMEAPTPVSALLHAGVVNLGGFVLIRFAPMLEQAGAARVLLLIFA 315 Query: 302 AGTVLLAGLVMLTRISIKVKLAWSTVAQMGFMLLECAAGLYLFAALHLIGHSLYKAHAFL 361 T +LAG+VMLTRIS+KV+LAWSTVAQMGFMLLECA GLY AALHLIGHSLYKAHAFL Sbjct: 316 LTTAVLAGIVMLTRISVKVRLAWSTVAQMGFMLLECALGLYTLAALHLIGHSLYKAHAFL 375 Query: 362 SASSVVRETRLSALHSPALPSAWSVILAPMVSIALVLGLHSLSPHAAWPWWWSGILGLAW 421 SAS VR+TR LH +LP SV+LAP+++I+ V + L+ AAWPWWWSG+LG+AW Sbjct: 376 SASESVRQTRQQTLHRTSLPGTLSVMLAPVLTISAVFLVLRLADLAAWPWWWSGVLGMAW 435 Query: 422 APLLWRSTAK--GSGGLRGWLLGLLGAAGLTLAALVAHLLPLHVNDYPRAVFGVTALLAM 479 APLLW A+ G+ L GL GL++ AL H LPL + D P G+ AL M Sbjct: 436 APLLWLPDAQDDGASPASQLLFGLFTVIGLSMIALFLHALPLGLQDAPDERLGLIALTGM 495 Query: 480 LALYVCMGLLQLAPQSMAAWRRRSYAGFYLDEAYTRLALQLWPSNWA 526 ALY+C LLQ PQ ++ WRR SYAGFYLDEAYTRL L LWP+ WA Sbjct: 496 AALYLCQVLLQKQPQRLSRWRRWSYAGFYLDEAYTRLTLLLWPTTWA 542 >ref|YP_003051861.1| NADH dehydrogenase subunit L [Methylovorus glucosetrophus SIP3-4] gb|ACT51334.1| NADH/Ubiquinone/plastoquinone (complex I) [Methylovorus glucosetrophus SIP3-4] Length = 517 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 309/510 (60%), Positives = 379/510 (74%), Gaps = 2/510 (0%) Query: 35 LISCSAWAPPALTMAAALALCLSRLAPPRVWTLFQSLSLLALLLTLFNLVMARDSAPWPG 94 L SA AP L AL L R + +W + + S AL +T +V + WPG Sbjct: 7 LYKVSALAPLVLMAGVALLAWLGRFSDATLWRILRVGSFAALAMTGLAIVTSYQGMLWPG 66 Query: 95 VLHPSTLGLVLALLVQGLGTVIGSFSARYLQGEAGQRQYAAALALVLTAVHLLLLADHWV 154 V+ + L +V+A LVQ LGTVIG FS+RYLQGE+GQ +Y AALA VL AVHLL+LADHWV Sbjct: 67 VIKATGLSMVMAALVQMLGTVIGGFSSRYLQGESGQARYVAALAAVLAAVHLLVLADHWV 126 Query: 155 VLIAAWAVVGLALQRLLCFYPERPFARLASYKKSIADRIADCLLIAAAALAWTTVGSGSF 214 +LI AWA VG+ALQ LLCFYP+RPFA LA++KK IADR+AD +LI AALAW VGSGS Sbjct: 127 LLIGAWAFVGVALQSLLCFYPDRPFALLAAHKKRIADRLADVMLIVVAALAWVEVGSGSL 186 Query: 215 SDLWAYLSQHGMSTSLQVSALCLTLAVILRTALLPVHGWLIQVMEAPTPVSALLHAGVVN 274 S L A+LSQH +S++LQVSA+ L LAVILRTALLPVHGWLIQVMEAPTPVSALLHAGVVN Sbjct: 187 SALMAHLSQHTISSALQVSAVALVLAVILRTALLPVHGWLIQVMEAPTPVSALLHAGVVN 246 Query: 275 LGGFVLVRFAPLLEQAVPARSVLLLVSAGTVLLAGLVMLTRISIKVKLAWSTVAQMGFML 334 LGG VL++FAPLLEQA PAR +LL+V T +LAG+VMLTRISIKV+LAWSTVAQMGF+L Sbjct: 247 LGGVVLIQFAPLLEQATPARLLLLVVGLATAVLAGMVMLTRISIKVRLAWSTVAQMGFLL 306 Query: 335 LECAAGLYLFAALHLIGHSLYKAHAFLSASSVVRETRLSALHSPALPSAWSVILAPMVSI 394 +ECA GLY AALHL+GHSLYKAHAFLSAS +VR+TRL ALH + P+A S++ AP+++I Sbjct: 307 MECALGLYTLAALHLLGHSLYKAHAFLSASGIVRQTRLQALHGDSKPNALSLLWAPLLTI 366 Query: 395 ALVLGLHSLSPHAAWPWWWSGILGLAWAPLLWRSTAKGSGGLRG--WLLGLLGAAGLTLA 452 + V SLS HAAWPWWWS +LGLAWAP++W+ A R L GLL GL LA Sbjct: 367 SAVQLTTSLSAHAAWPWWWSAVLGLAWAPMIWQPAAPAGFAFRAGQLLTGLLMVFGLALA 426 Query: 453 ALVAHLLPLHVNDYPRAVFGVTALLAMLALYVCMGLLQLAPQSMAAWRRRSYAGFYLDEA 512 A++AH LPL +++ P + G+ AL M LY+C +LQ P ++ WRR SYAGFY+DEA Sbjct: 427 AMLAHALPLGLHNAPHPLLGLIALTGMATLYLCQAMLQRWPHLLSRWRRWSYAGFYVDEA 486 Query: 513 YTRLALQLWPSNWAPSARRAAAEQQVNNLA 542 YTRLALQLWP+ W P A ++ + +++ Sbjct: 487 YTRLALQLWPTRWIPHAGTHIKQEAITDVS 516 >ref|YP_004040430.1| NADH/ubiquinone/plastoquinone (complex i) [Methylovorus sp. MP688] gb|ADQ85194.1| NADH/Ubiquinone/plastoquinone (complex I) [Methylovorus sp. MP688] Length = 517 Score = 460 bits (1184), Expect = e-127, Method: Composition-based stats. Identities = 307/510 (60%), Positives = 377/510 (73%), Gaps = 2/510 (0%) Query: 35 LISCSAWAPPALTMAAALALCLSRLAPPRVWTLFQSLSLLALLLTLFNLVMARDSAPWPG 94 L SA AP L AL L R + +W + + S AL +T +V + WPG Sbjct: 7 LYKVSALAPLVLMAGVALLAWLGRFSDATLWRILRVGSFAALAMTGLAIVTSSQGMLWPG 66 Query: 95 VLHPSTLGLVLALLVQGLGTVIGSFSARYLQGEAGQRQYAAALALVLTAVHLLLLADHWV 154 V+ + L +V+A LVQ LGTVIG FS+RYLQGE+GQ +Y AALA VL AVHLL+LADHWV Sbjct: 67 VIKATGLSMVMAALVQMLGTVIGGFSSRYLQGESGQARYIAALAAVLAAVHLLVLADHWV 126 Query: 155 VLIAAWAVVGLALQRLLCFYPERPFARLASYKKSIADRIADCLLIAAAALAWTTVGSGSF 214 +LI AWA VG+ALQ LLCFYP+RPFA LA++KK IADR+AD +LI AAALAW VGSGS Sbjct: 127 LLIGAWAFVGVALQSLLCFYPDRPFALLAAHKKRIADRLADVMLIVAAALAWVEVGSGSL 186 Query: 215 SDLWAYLSQHGMSTSLQVSALCLTLAVILRTALLPVHGWLIQVMEAPTPVSALLHAGVVN 274 S L A+LSQH +S +LQ+SA+ L LAVILRTALLPVHGWLIQVMEAPTPVSALLHAGVVN Sbjct: 187 SALMAHLSQHTISPALQISAVALVLAVILRTALLPVHGWLIQVMEAPTPVSALLHAGVVN 246 Query: 275 LGGFVLVRFAPLLEQAVPARSVLLLVSAGTVLLAGLVMLTRISIKVKLAWSTVAQMGFML 334 LGG VL++FAPLLEQA PAR +LL+V T +LAG+VMLTRISIKV+LAWSTVAQMGF+L Sbjct: 247 LGGVVLIQFAPLLEQATPARLLLLVVGLATAVLAGMVMLTRISIKVRLAWSTVAQMGFLL 306 Query: 335 LECAAGLYLFAALHLIGHSLYKAHAFLSASSVVRETRLSALHSPALPSAWSVILAPMVSI 394 +ECA GLY AALHL+GHSLYKAHAFLSAS +VR+TRL ALH + P+A S++ AP+++I Sbjct: 307 MECALGLYTLAALHLLGHSLYKAHAFLSASGIVRQTRLQALHGDSKPNALSLLWAPLLTI 366 Query: 395 ALVLGLHSLSPHAAWPWWWSGILGLAWAPLLWRSTAKGSGGLRG--WLLGLLGAAGLTLA 452 + V LS H AWPWWWS +LGLAWAP++W+ A R L GLL GL LA Sbjct: 367 SAVQLTTGLSAHPAWPWWWSAVLGLAWAPMIWQPAAPAGFAFRAGQLLTGLLMVFGLALA 426 Query: 453 ALVAHLLPLHVNDYPRAVFGVTALLAMLALYVCMGLLQLAPQSMAAWRRRSYAGFYLDEA 512 A++AH LPL +++ P + G+ AL M LY+C +LQ P ++ WRR SYAGFY+DEA Sbjct: 427 AMLAHALPLGLHNAPHPLLGLIALTGMATLYLCQAMLQRWPHLLSRWRRWSYAGFYVDEA 486 Query: 513 YTRLALQLWPSNWAPSARRAAAEQQVNNLA 542 YTRLALQLWP+ W P A ++ + +++ Sbjct: 487 YTRLALQLWPTRWIPHAGTHIKQEAITDVS 516