BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1714.p (297 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775725.1| LysR family transcription regulator protein ... 511 e-143 ref|YP_004388843.1| LysR family transcriptional regulator [Alicy... 445 e-123 ref|YP_004040429.1| LysR family transcriptional regulator [Methy... 442 e-122 ref|YP_003051860.1| LysR family transcriptional regulator [Methy... 441 e-122 ref|ZP_07677989.1| transcriptional regulator, LysR family [Ralst... 436 e-120 >ref|YP_003775725.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63817.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 306 Score = 511 bits (1317), Expect = e-143, Method: Composition-based stats. Identities = 263/297 (88%), Positives = 279/297 (93%) Query: 1 MRLEQLNFHHLRYFWRVAKLGHLTRAAEELHTSQSAVSAQIRQLEKQLEEDLFIREGRRL 60 MRLEQLNFHHLRYFWRVAKLGHLTRAAEELHTSQSAVSAQIRQLEK L EDLFIREGRRL Sbjct: 1 MRLEQLNFHHLRYFWRVAKLGHLTRAAEELHTSQSAVSAQIRQLEKHLGEDLFIREGRRL 60 Query: 61 TLTDTGQLVFTYADNIFGLSQELLGRLEGRSAGVTRLRVGSVATLSRNYQENWIRPMLSD 120 +L+DTGQLVFTYADNIFGLSQE+LGRLEGRSAGVTRLRVGSVATLSRNYQENW+RPMLSD Sbjct: 61 SLSDTGQLVFTYADNIFGLSQEMLGRLEGRSAGVTRLRVGSVATLSRNYQENWLRPMLSD 120 Query: 121 PSVSLTLESGLLEGLLERLMQHQLDVVLANETVPSDPDRPLHCRFLGSQAVSVVGPAHRW 180 PSV+LTLESG LEGLLERL+QHQLDVVLANETVP+DPDRPLHCRFLGSQAVSVVGPAHRW Sbjct: 121 PSVALTLESGQLEGLLERLVQHQLDVVLANETVPADPDRPLHCRFLGSQAVSVVGPAHRW 180 Query: 181 EARSLRIPQDLEGVDMALPGPRHALRMQFDALCISNDVRPRMRAEVDDMAMLRLIARDSG 240 EA SLRIP+DLEG+DMALPGPRHALRM+FDALC+S DVRPR+RAEVDDMAMLRLIARDSG Sbjct: 181 EAGSLRIPEDLEGIDMALPGPRHALRMRFDALCVSADVRPRLRAEVDDMAMLRLIARDSG 240 Query: 241 WLTVLPEVVVQDELRNGTLVAAGQASELVESFYAITTPHHHYDELLEPLLGEGAQAA 297 WL+VLPEVVVQDELRNG LV GQ +ELVE+FYAITTP HHY L+E LL A A Sbjct: 241 WLSVLPEVVVQDELRNGVLVTVGQTTELVENFYAITTPQHHYGGLVERLLNGSAATA 297 >ref|YP_004388843.1| LysR family transcriptional regulator [Alicycliphilus denitrificans K601] gb|AEB85327.1| transcriptional regulator, LysR family [Alicycliphilus denitrificans K601] Length = 305 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 226/294 (76%), Positives = 261/294 (88%) Query: 1 MRLEQLNFHHLRYFWRVAKLGHLTRAAEELHTSQSAVSAQIRQLEKQLEEDLFIREGRRL 60 M+L+QLNFHHL YFWRVAKL HLTRAAEEL+TSQSAVSAQIRQLE+++ E LF REGRR+ Sbjct: 1 MKLQQLNFHHLFYFWRVAKLQHLTRAAEELNTSQSAVSAQIRQLEERIGEPLFDREGRRM 60 Query: 61 TLTDTGQLVFTYADNIFGLSQELLGRLEGRSAGVTRLRVGSVATLSRNYQENWIRPMLSD 120 LT TGQLV YA+NIFGL QE+LGRL+G++AG+TRLRVGSVAT+SRNYQENW+RP+L+D Sbjct: 61 VLTATGQLVQAYAENIFGLGQEMLGRLQGQAAGITRLRVGSVATMSRNYQENWLRPLLAD 120 Query: 121 PSVSLTLESGLLEGLLERLMQHQLDVVLANETVPSDPDRPLHCRFLGSQAVSVVGPAHRW 180 P V+LTLESG+LEGL+ERL+QHQLDVVLANETVP+ PDRPLHCRFLGSQ++S+VGPA RW Sbjct: 121 PGVTLTLESGVLEGLIERLLQHQLDVVLANETVPAHPDRPLHCRFLGSQSISLVGPASRW 180 Query: 181 EARSLRIPQDLEGVDMALPGPRHALRMQFDALCISNDVRPRMRAEVDDMAMLRLIARDSG 240 + SLRIP DL+G+D+ALPGPRHA+R QFDALC+S V PR+RAEVDDMAMLRLIARDSG Sbjct: 181 HSCSLRIPNDLDGLDLALPGPRHAVRAQFDALCLSAGVAPRLRAEVDDMAMLRLIARDSG 240 Query: 241 WLTVLPEVVVQDELRNGTLVAAGQASELVESFYAITTPHHHYDELLEPLLGEGA 294 WLTVLPEVVVQDELR G LV GQ+ +L ESFYAIT PH H +LLEPLL A Sbjct: 241 WLTVLPEVVVQDELRAGVLVTVGQSPDLRESFYAITAPHRHRIDLLEPLLRPSA 294 >ref|YP_004040429.1| LysR family transcriptional regulator [Methylovorus sp. MP688] gb|ADQ85193.1| transcriptional regulator, LysR family [Methylovorus sp. MP688] Length = 304 Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 222/291 (76%), Positives = 254/291 (87%) Query: 1 MRLEQLNFHHLRYFWRVAKLGHLTRAAEELHTSQSAVSAQIRQLEKQLEEDLFIREGRRL 60 M+L+QLNFHHL YFWRVAKLGHLTRAAEELHTSQSAVSAQIRQLE++ +DLF R+GR+L Sbjct: 1 MKLDQLNFHHLLYFWRVAKLGHLTRAAEELHTSQSAVSAQIRQLEERFGDDLFTRKGRKL 60 Query: 61 TLTDTGQLVFTYADNIFGLSQELLGRLEGRSAGVTRLRVGSVATLSRNYQENWIRPMLSD 120 LTDTGQLV YADNIFGL +E+LGRL+GR+AG+TRLRVGSV TLSRNYQENWIRP+L+D Sbjct: 61 ILTDTGQLVLAYADNIFGLGEEMLGRLQGRTAGLTRLRVGSVGTLSRNYQENWIRPLLAD 120 Query: 121 PSVSLTLESGLLEGLLERLMQHQLDVVLANETVPSDPDRPLHCRFLGSQAVSVVGPAHRW 180 P V LTLESGLL L+ RL+QHQLDVVL+NETVP+DPDRP+HC FLGSQ++S+VGPA RW Sbjct: 121 PDVVLTLESGLLNDLVARLVQHQLDVVLSNETVPADPDRPMHCLFLGSQSISLVGPASRW 180 Query: 181 EARSLRIPQDLEGVDMALPGPRHALRMQFDALCISNDVRPRMRAEVDDMAMLRLIARDSG 240 ++SLRIP+DL+GVD+ALPGPRHALR QFDALC + V PR+RAEVDDMAMLRLIARDSG Sbjct: 181 ASQSLRIPEDLDGVDIALPGPRHALRAQFDALCATAGVAPRLRAEVDDMAMLRLIARDSG 240 Query: 241 WLTVLPEVVVQDELRNGTLVAAGQASELVESFYAITTPHHHYDELLEPLLG 291 WLT+LPEVVVQDELR G LV G ++ L E FYAITT H H E LE LL Sbjct: 241 WLTLLPEVVVQDELRAGVLVTVGHSAALQERFYAITTTHRHRIEALEKLLA 291 >ref|YP_003051860.1| LysR family transcriptional regulator [Methylovorus glucosetrophus SIP3-4] gb|ACT51333.1| transcriptional regulator, LysR family [Methylovorus glucosetrophus SIP3-4] Length = 300 Score = 441 bits (1134), Expect = e-122, Method: Composition-based stats. Identities = 222/291 (76%), Positives = 254/291 (87%) Query: 1 MRLEQLNFHHLRYFWRVAKLGHLTRAAEELHTSQSAVSAQIRQLEKQLEEDLFIREGRRL 60 M+L+QLNFHHL YFWRVAKLGHLTRAAEELHTSQSAVSAQIRQLE++ +DLF R+GR+L Sbjct: 1 MKLDQLNFHHLLYFWRVAKLGHLTRAAEELHTSQSAVSAQIRQLEERFGDDLFTRKGRKL 60 Query: 61 TLTDTGQLVFTYADNIFGLSQELLGRLEGRSAGVTRLRVGSVATLSRNYQENWIRPMLSD 120 LTDTGQLV YADNIFGL +E+LGRL+GR+AG+TRLRVGSV TLSRNYQENWIRP+L+D Sbjct: 61 ILTDTGQLVLAYADNIFGLGEEMLGRLQGRTAGLTRLRVGSVGTLSRNYQENWIRPLLAD 120 Query: 121 PSVSLTLESGLLEGLLERLMQHQLDVVLANETVPSDPDRPLHCRFLGSQAVSVVGPAHRW 180 P V LTLESGLL L+ RL+QHQLDVVL+NETVP+DPDRP+HC FLGSQ++S+VGPA RW Sbjct: 121 PDVVLTLESGLLNDLVARLVQHQLDVVLSNETVPADPDRPMHCLFLGSQSISLVGPASRW 180 Query: 181 EARSLRIPQDLEGVDMALPGPRHALRMQFDALCISNDVRPRMRAEVDDMAMLRLIARDSG 240 ++SLRIP+DL+GVD+ALPGPRHALR QFDALC + V PR+RAEVDDMAMLRLIARDSG Sbjct: 181 ASQSLRIPEDLDGVDIALPGPRHALRAQFDALCATAGVAPRLRAEVDDMAMLRLIARDSG 240 Query: 241 WLTVLPEVVVQDELRNGTLVAAGQASELVESFYAITTPHHHYDELLEPLLG 291 WLT+LPEVVVQDELR G LV G ++ L E FYAITT H H E LE LL Sbjct: 241 WLTLLPEVVVQDELRAGVLVTVGHSAALQERFYAITTTHRHRIEALEKLLA 291 >ref|ZP_07677989.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA] gb|EFP63631.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA] Length = 300 Score = 436 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 225/290 (77%), Positives = 259/290 (89%) Query: 1 MRLEQLNFHHLRYFWRVAKLGHLTRAAEELHTSQSAVSAQIRQLEKQLEEDLFIREGRRL 60 MRL+QLNF+HL YFWRVAKLGHLT+AA+ELHTSQSAVS QIRQLE++L E+LF+REGRRL Sbjct: 1 MRLDQLNFNHLFYFWRVAKLGHLTQAAQELHTSQSAVSTQIRQLEERLGEELFLREGRRL 60 Query: 61 TLTDTGQLVFTYADNIFGLSQELLGRLEGRSAGVTRLRVGSVATLSRNYQENWIRPMLSD 120 LTDTGQLV YA+NIFGL QE+LGRL+G ++GVTRLRVGSVATLSRNYQENWIRP+L+D Sbjct: 61 LLTDTGQLVLAYAENIFGLGQEMLGRLQGSASGVTRLRVGSVATLSRNYQENWIRPLLAD 120 Query: 121 PSVSLTLESGLLEGLLERLMQHQLDVVLANETVPSDPDRPLHCRFLGSQAVSVVGPAHRW 180 PSV LTLESGLLEGL+ RL+QHQLDVVLANE+VPSD +RPLHC+FLGSQ++S+VGPA W Sbjct: 121 PSVVLTLESGLLEGLISRLVQHQLDVVLANESVPSDSERPLHCQFLGSQSISLVGPASVW 180 Query: 181 EARSLRIPQDLEGVDMALPGPRHALRMQFDALCISNDVRPRMRAEVDDMAMLRLIARDSG 240 ++RSLRIP+DLEG+++ALPGPRHALR QF+ALC S V PR+RAEVDDMAMLRLIARDSG Sbjct: 181 QSRSLRIPEDLEGMEVALPGPRHALRAQFEALCASAGVTPRLRAEVDDMAMLRLIARDSG 240 Query: 241 WLTVLPEVVVQDELRNGTLVAAGQASELVESFYAITTPHHHYDELLEPLL 290 WLTVLPEVVVQDELR G LV G ++ L E FYAITT H H E+LE LL Sbjct: 241 WLTVLPEVVVQDELRTGILVKVGYSAGLQEHFYAITTRHRHRIEVLETLL 290