BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1713.p         (105 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002947425.1| transcriptional regulator, ArsR family [Vari...   134   6e-30
ref|YP_973026.1| ArsR family transcriptional regulator [Acidovor...   133   7e-30
ref|YP_003775723.1| ArsR family transcription regulator protein ...   131   4e-29
ref|YP_004237136.1| regulatory protein ArsR [Acidovorax avenae s...   130   5e-29
ref|YP_551619.1| ArsR family transcriptional regulator [Polaromo...   130   9e-29

>ref|YP_002947425.1| transcriptional regulator, ArsR family [Variovorax paradoxus S110]
 gb|ACS22159.1| transcriptional regulator, ArsR family [Variovorax paradoxus S110]
          Length = 109

 Score =  134 bits (336), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 72/94 (76%), Positives = 83/94 (88%)

Query: 12  MRRAAGQAVAALKVLANEDRLLLMCQLSQAEMCVSELEESLDIRQPTLSQQLGVLRNEGV 71
           +R AA +AV  LKVLANEDR+LL+CQLSQ EMCVSELE  LDIRQPTLSQQLGVLRNEGV
Sbjct: 15  LRGAAARAVGMLKVLANEDRMLLLCQLSQGEMCVSELEAQLDIRQPTLSQQLGVLRNEGV 74

Query: 72  VSTRREGKRVYYRVADPKLLEMLGLMYQLYCPKE 105
           V+TRR+GK V+Y VADP LLE+L L+Y++YCPKE
Sbjct: 75  VTTRRQGKNVFYAVADPSLLEILALLYRIYCPKE 108


>ref|YP_973026.1| ArsR family transcriptional regulator [Acidovorax citrulli AAC00-1]
 gb|ABM35252.1| transcriptional regulator, ArsR family [Acidovorax citrulli
           AAC00-1]
          Length = 110

 Score =  133 bits (335), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 77/103 (74%), Positives = 89/103 (86%)

Query: 3   ARVPLQADQMRRAAGQAVAALKVLANEDRLLLMCQLSQAEMCVSELEESLDIRQPTLSQQ 62
           A+ PL    +R+AA QAVA LKVLANEDRLLL+CQLSQ EMCVSELE  LDIRQPTLSQQ
Sbjct: 8   AQPPLDPQVLRQAAVQAVARLKVLANEDRLLLLCQLSQGEMCVSELEACLDIRQPTLSQQ 67

Query: 63  LGVLRNEGVVSTRREGKRVYYRVADPKLLEMLGLMYQLYCPKE 105
           LGVLR +GVV+TRREGK ++YRVADP LLE+L ++Y+LYCPKE
Sbjct: 68  LGVLRRQGVVATRREGKNIHYRVADPALLEVLAVLYRLYCPKE 110


>ref|YP_003775723.1| ArsR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ63815.1| ArsR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 110

 Score =  131 bits (329), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 88/110 (80%), Positives = 97/110 (88%), Gaps = 5/110 (4%)

Query: 1   MDARVP-----LQADQMRRAAGQAVAALKVLANEDRLLLMCQLSQAEMCVSELEESLDIR 55
           M AR P     L A++MR+AAG+AV ALKVLANEDRLLL+CQLSQ EMCVSELEE LDIR
Sbjct: 1   MTARAPVPSLALPAERMRQAAGEAVGALKVLANEDRLLLLCQLSQQEMCVSELEEQLDIR 60

Query: 56  QPTLSQQLGVLRNEGVVSTRREGKRVYYRVADPKLLEMLGLMYQLYCPKE 105
           QPTLSQQLGVLRNEGVVSTRR+GKR+YYRVAD +LLEML LMY+LYCPKE
Sbjct: 61  QPTLSQQLGVLRNEGVVSTRRDGKRIYYRVADARLLEMLDLMYRLYCPKE 110


>ref|YP_004237136.1| regulatory protein ArsR [Acidovorax avenae subsp. avenae ATCC
           19860]
 gb|ADX48569.1| regulatory protein ArsR [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 117

 Score =  130 bits (328), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 75/99 (75%), Positives = 86/99 (86%)

Query: 7   LQADQMRRAAGQAVAALKVLANEDRLLLMCQLSQAEMCVSELEESLDIRQPTLSQQLGVL 66
           L    +R+AA QAVA LKVLANEDRLLL+CQLSQ EMCVSELE  LDIRQPTLSQQLGVL
Sbjct: 19  LDPQALRQAAVQAVARLKVLANEDRLLLLCQLSQGEMCVSELEACLDIRQPTLSQQLGVL 78

Query: 67  RNEGVVSTRREGKRVYYRVADPKLLEMLGLMYQLYCPKE 105
           R +GVV+TRREGK ++YRVADP LLE+L ++Y+LYCPKE
Sbjct: 79  RRQGVVATRREGKNIHYRVADPALLEVLAVLYRLYCPKE 117


>ref|YP_551619.1| ArsR family transcriptional regulator [Polaromonas sp. JS666]
 gb|ABE46721.1| transcriptional regulator, ArsR family [Polaromonas sp. JS666]
          Length = 117

 Score =  130 bits (326), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 68/93 (73%), Positives = 80/93 (86%)

Query: 12  MRRAAGQAVAALKVLANEDRLLLMCQLSQAEMCVSELEESLDIRQPTLSQQLGVLRNEGV 71
           +R AA QAV  LK+LANEDRLLL+CQLSQ E CVSELE+ L IRQPTLSQQLGVLRNEGV
Sbjct: 13  LRGAAAQAVGVLKLLANEDRLLLLCQLSQGERCVSELEDELSIRQPTLSQQLGVLRNEGV 72

Query: 72  VSTRREGKRVYYRVADPKLLEMLGLMYQLYCPK 104
           V TRR+GK +YY VADP +LE+L ++Y+LYCP+
Sbjct: 73  VDTRRQGKNIYYSVADPAMLEILAVLYRLYCPE 105