BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1712.p         (151 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775722.1| transmembrane protein [Herbaspirillum serope...   144   5e-33
ref|YP_001021907.1| hypothetical protein Mpe_A2718 [Methylibium ...   144   6e-33
ref|YP_958765.1| protein of unknown function DUF395, YeeE/YedE [...   141   3e-32
emb|CBY25857.1| putative transmembrane protein [Yersinia enteroc...   141   3e-32
ref|ZP_08273905.1| putative transmembrane protein [Oxalobacterac...   140   6e-32

>ref|YP_003775722.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63814.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 144

 Score =  144 bits (363), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 103/144 (71%), Positives = 118/144 (81%)

Query: 3   MDIALNAFTPVASLAGGLLIGAAASVLVLCNGRIAGISGIVAGLLPPSALDRAWRALFVL 62
           M +   AFTPV +LAGG LIG AA++L+L NGR+AG+SGI+ GLL P A DRAWRA+F+L
Sbjct: 1   MQVDWTAFTPVTALAGGALIGLAAAILILANGRVAGVSGILGGLLQPRAGDRAWRAMFLL 60

Query: 63  GLLLAPLLVSLASALPAPRIDAGYAAIVLAGLLVGVGTRYGAGCTSGHGVCGLSRLSPRS 122
           GLL APLL+ L ++LP   IDAG   IVLAGLLVG+GTRYGAGCTSGHGVCGLSR S RS
Sbjct: 61  GLLAAPLLMRLGASLPPIHIDAGLGQIVLAGLLVGLGTRYGAGCTSGHGVCGLSRFSLRS 120

Query: 123 AVATACFMAAGFLSVYLLRHVLGL 146
           AVAT CFM AGF+SVYLLRHV GL
Sbjct: 121 AVATVCFMMAGFVSVYLLRHVAGL 144


>ref|YP_001021907.1| hypothetical protein Mpe_A2718 [Methylibium petroleiphilum PM1]
 gb|ABM95672.1| conserved hypothetical protein [Methylibium petroleiphilum PM1]
          Length = 144

 Score =  144 bits (362), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 93/144 (64%), Positives = 112/144 (77%)

Query: 3   MDIALNAFTPVASLAGGLLIGAAASVLVLCNGRIAGISGIVAGLLPPSALDRAWRALFVL 62
           M+I  NA+TP ++LAGGLLIG AA+  VL NGRIAGISGIV GLL P   D AWR  FV 
Sbjct: 1   MNIDWNAYTPWSALAGGLLIGLAAAAFVLLNGRIAGISGIVGGLLRPVWGDAAWRVAFVA 60

Query: 63  GLLLAPLLVSLASALPAPRIDAGYAAIVLAGLLVGVGTRYGAGCTSGHGVCGLSRLSPRS 122
           GL+ AP +  L +ALP  +IDAG+  +V+AG+LVG G+RYG+GCTSGHG+CGLSRLSPRS
Sbjct: 61  GLIGAPFVYLLFAALPKAQIDAGFGTLVVAGVLVGAGSRYGSGCTSGHGICGLSRLSPRS 120

Query: 123 AVATACFMAAGFLSVYLLRHVLGL 146
            VATA FMAAGF +V+ +RHV G 
Sbjct: 121 LVATATFMAAGFATVFAVRHVFGF 144


>ref|YP_958765.1| protein of unknown function DUF395, YeeE/YedE [Marinobacter
           aquaeolei VT8]
 gb|ABM18578.1| protein of unknown function DUF395, YeeE/YedE [Marinobacter
           aquaeolei VT8]
          Length = 145

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 91/143 (63%), Positives = 112/143 (78%)

Query: 3   MDIALNAFTPVASLAGGLLIGAAASVLVLCNGRIAGISGIVAGLLPPSALDRAWRALFVL 62
           +DIA + FTP A+L GGLLIG AA+  +L NGRIAGISGI+ GLL P+  D  WR  F+ 
Sbjct: 2   IDIAWSQFTPGAALTGGLLIGLAAASFLLLNGRIAGISGILGGLLVPARRDILWRVAFLA 61

Query: 63  GLLLAPLLVSLASALPAPRIDAGYAAIVLAGLLVGVGTRYGAGCTSGHGVCGLSRLSPRS 122
           GL+  P L  L S LP  +IDAGY A++LAGLLVG+GTRYG+GCTSGHGVCGLSRLSPRS
Sbjct: 62  GLVGTPSLWLLFSELPPIQIDAGYPALILAGLLVGIGTRYGSGCTSGHGVCGLSRLSPRS 121

Query: 123 AVATACFMAAGFLSVYLLRHVLG 145
            VAT  FMA GF++V+++RH++G
Sbjct: 122 LVATLSFMATGFITVFVIRHLMG 144


>emb|CBY25857.1| putative transmembrane protein [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 143

 Score =  141 bits (355), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 85/143 (59%), Positives = 108/143 (75%)

Query: 3   MDIALNAFTPVASLAGGLLIGAAASVLVLCNGRIAGISGIVAGLLPPSALDRAWRALFVL 62
           M I    FTP ++L GG+L+G A  +L+LCNGRIAGISGI+ GLLPP A D  WR  F+L
Sbjct: 1   MTIDWANFTPYSALTGGVLLGIAVIILLLCNGRIAGISGILGGLLPPKAGDTFWRVTFIL 60

Query: 63  GLLLAPLLVSLASALPAPRIDAGYAAIVLAGLLVGVGTRYGAGCTSGHGVCGLSRLSPRS 122
           GL+ AP++ SL +ALP  +IDA   A+++AGLLVG+GTRYGAGCTSGHGVCGL+R SPRS
Sbjct: 61  GLIAAPVIYSLFTALPVIQIDASLPALIVAGLLVGIGTRYGAGCTSGHGVCGLARFSPRS 120

Query: 123 AVATACFMAAGFLSVYLLRHVLG 145
            +AT  FM  GF +V+L+ H+  
Sbjct: 121 LLATLSFMLTGFATVWLVHHLFA 143


>ref|ZP_08273905.1| putative transmembrane protein [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF32620.1| putative transmembrane protein [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 143

 Score =  140 bits (353), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 91/143 (63%), Positives = 111/143 (77%)

Query: 3   MDIALNAFTPVASLAGGLLIGAAASVLVLCNGRIAGISGIVAGLLPPSALDRAWRALFVL 62
           M I    FTP  SLAGG+LIG AA++L+  NGRIAGISGI+ GLL P   D  WRA+FVL
Sbjct: 1   MTIDWMHFTPWTSLAGGVLIGIAAAMLLFFNGRIAGISGILGGLLRPVRGDIGWRAVFVL 60

Query: 63  GLLLAPLLVSLASALPAPRIDAGYAAIVLAGLLVGVGTRYGAGCTSGHGVCGLSRLSPRS 122
           GL+ APL+  L + LPA +++AG   +++AGLLVGVGTRYG+GCTSGHGVCGL+RLSPRS
Sbjct: 61  GLVAAPLVWRLFAPLPAVQVEAGNVTLIVAGLLVGVGTRYGSGCTSGHGVCGLARLSPRS 120

Query: 123 AVATACFMAAGFLSVYLLRHVLG 145
            VATA FM AGF  V+++RHVL 
Sbjct: 121 MVATAAFMLAGFACVFIVRHVLA 143