BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1711.p         (142 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_551621.1| hypothetical protein Bpro_4847 [Polaromonas sp....   148   3e-34
ref|YP_003775721.1| transmembrane protein [Herbaspirillum serope...   147   4e-34
ref|YP_587802.1| hypothetical protein Rmet_5674 [Cupriavidus met...   140   5e-32
ref|YP_004752778.1| hypothetical protein CFU_2125 [Collimonas fu...   139   1e-31
ref|YP_002947427.1| protein of unknown function DUF395 YeeE/YedE...   135   2e-30

>ref|YP_551621.1| hypothetical protein Bpro_4847 [Polaromonas sp. JS666]
 gb|ABE46723.1| protein of unknown function DUF395, YeeE/YedE [Polaromonas sp.
           JS666]
          Length = 145

 Score =  148 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 91/127 (71%), Positives = 103/127 (81%)

Query: 7   LAALAAGLLFGLGLIVSGMADPAKVLGFLDLDGQWDPSLALVMGGAIAIGLPAFTLARKR 66
           L +L AGL+FGLGLIVSGMA+PAKVLGFLDL G+WDPSLALVM GAIA+G  AF LA+ R
Sbjct: 4   LTSLLAGLVFGLGLIVSGMANPAKVLGFLDLAGRWDPSLALVMAGAIAVGSVAFLLAKNR 63

Query: 67  QWTLLGEPMQLPTARTIDRRLVLGSLLFGVGWGIAGICPGPALVLLGMASGKGLAFVLAM 126
             +LLG  M+LPTA  IDRRLV+GS LFG+GWGIAG CPGP LV LGM   K L FV AM
Sbjct: 64  TRSLLGAEMKLPTASHIDRRLVVGSALFGMGWGIAGFCPGPGLVALGMGESKALLFVAAM 123

Query: 127 LAGMLLF 133
           LAGM++F
Sbjct: 124 LAGMVVF 130


>ref|YP_003775721.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63813.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 139

 Score =  147 bits (372), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 94/127 (74%), Positives = 107/127 (84%)

Query: 7   LAALAAGLLFGLGLIVSGMADPAKVLGFLDLDGQWDPSLALVMGGAIAIGLPAFTLARKR 66
           L AL +GL+FG GL++SGMADPAKVL FLDL G WDPSL LVM  AIA+G+PAF  AR+ 
Sbjct: 4   LTALLSGLVFGFGLLLSGMADPAKVLAFLDLAGAWDPSLMLVMAAAIAVGVPAFAHARRM 63

Query: 67  QWTLLGEPMQLPTARTIDRRLVLGSLLFGVGWGIAGICPGPALVLLGMASGKGLAFVLAM 126
           + +LLG+PMQLP AR IDRRLVLGSL+FGVGWG+AGICPGPALVL+G    KGL FVLAM
Sbjct: 64  KASLLGQPMQLPAARQIDRRLVLGSLVFGVGWGMAGICPGPALVLVGAGQFKGLVFVLAM 123

Query: 127 LAGMLLF 133
           LAGMLLF
Sbjct: 124 LAGMLLF 130


>ref|YP_587802.1| hypothetical protein Rmet_5674 [Cupriavidus metallidurans CH34]
 gb|ABF12533.1| conserved hypothetical protein [Cupriavidus metallidurans CH34]
          Length = 143

 Score =  140 bits (354), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 89/127 (70%), Positives = 101/127 (79%)

Query: 7   LAALAAGLLFGLGLIVSGMADPAKVLGFLDLDGQWDPSLALVMGGAIAIGLPAFTLARKR 66
           + AL AGLLFG+GL+VSGMA+PAKVLGFLDL G+WDPSLA VM GAIAIG  AF LA++R
Sbjct: 4   ITALLAGLLFGIGLMVSGMANPAKVLGFLDLAGRWDPSLAFVMVGAIAIGSAAFLLAKRR 63

Query: 67  QWTLLGEPMQLPTARTIDRRLVLGSLLFGVGWGIAGICPGPALVLLGMASGKGLAFVLAM 126
           Q +LLG PMQLPT   I  RLV+GS LFG+GWG AG CPGPALV LG    K + FVLAM
Sbjct: 64  QRSLLGLPMQLPTNTVITPRLVIGSALFGIGWGTAGFCPGPALVALGAGYPKAIGFVLAM 123

Query: 127 LAGMLLF 133
            AGML+F
Sbjct: 124 AAGMLVF 130


>ref|YP_004752778.1| hypothetical protein CFU_2125 [Collimonas fungivorans Ter331]
 gb|AEK61955.1| hypothetical protein CFU_2125 [Collimonas fungivorans Ter331]
          Length = 193

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 87/131 (66%), Positives = 104/131 (79%)

Query: 7   LAALAAGLLFGLGLIVSGMADPAKVLGFLDLDGQWDPSLALVMGGAIAIGLPAFTLARKR 66
           + +L AGL+FGLGLIVSGMA+PAKVLGFLDL G WDPSLA VM GAIA+GL AF+ A++R
Sbjct: 53  ITSLLAGLVFGLGLIVSGMANPAKVLGFLDLGGAWDPSLAFVMAGAIALGLAAFSFAKRR 112

Query: 67  QWTLLGEPMQLPTARTIDRRLVLGSLLFGVGWGIAGICPGPALVLLGMASGKGLAFVLAM 126
             +L+G  M+LP AR IDR L++GS +FG GWG+AGICPGPALV LGM   K L FV AM
Sbjct: 113 TRSLIGAEMKLPAARHIDRSLLIGSAVFGAGWGMAGICPGPALVDLGMGETKALVFVAAM 172

Query: 127 LAGMLLFRWSE 137
           LAGM +F  +E
Sbjct: 173 LAGMAVFEIAE 183


>ref|YP_002947427.1| protein of unknown function DUF395 YeeE/YedE [Variovorax paradoxus
           S110]
 gb|ACS22161.1| protein of unknown function DUF395 YeeE/YedE [Variovorax paradoxus
           S110]
          Length = 160

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 86/124 (69%), Positives = 98/124 (79%)

Query: 7   LAALAAGLLFGLGLIVSGMADPAKVLGFLDLDGQWDPSLALVMGGAIAIGLPAFTLARKR 66
             +  AGL+FGLGLIVSGMA+PAKVLGFLDL G+WDPSLA VMGGAIA+G  AF +AR+R
Sbjct: 4   FTSFLAGLVFGLGLIVSGMANPAKVLGFLDLGGRWDPSLAFVMGGAIAVGAVAFAVARRR 63

Query: 67  QWTLLGEPMQLPTARTIDRRLVLGSLLFGVGWGIAGICPGPALVLLGMASGKGLAFVLAM 126
               LG PM+LP +R IDRRLVLGS+LFG+GWG+AG CPGP LV  GM   K L FV AM
Sbjct: 64  TRFFLGAPMRLPASRAIDRRLVLGSVLFGIGWGVAGFCPGPGLVAAGMGEVKALVFVAAM 123

Query: 127 LAGM 130
           LAGM
Sbjct: 124 LAGM 127