BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1706.p         (137 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775710.1| membrane protein [Herbaspirillum seropedicae...   184   4e-45
ref|YP_004619811.1| membrane protein [Ramlibacter tataouinensis ...   149   1e-34
gb|ACY24691.1| conserved hypothetical protein [uncultured organism]   134   5e-30
emb|CBA33495.1| hypothetical protein Csp_B19340 [Curvibacter put...   118   2e-25
ref|YP_004489753.1| hypothetical protein DelCs14_4419 [Delftia s...   116   9e-25

>ref|YP_003775710.1| membrane protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63802.1| membrane protein [Herbaspirillum seropedicae SmR1]
          Length = 137

 Score =  184 bits (467), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 109/137 (79%), Positives = 121/137 (88%)

Query: 1   MSLTPLIALHLSVALAAVVIGPFAFWARLGRTVRPRWHRALGYAWFSCMAATVLSALFIR 60
           MSL P++ +HL+ ALAA+++GP A W RL   VRPRWHRALGY WF+CM A VLSALFIR
Sbjct: 1   MSLAPVVVIHLTAALAALLVGPLALWTRLAAPVRPRWHRALGYGWFTCMVAVVLSALFIR 60

Query: 61  SHDLPNIAGYTPLHLLVPATAFLLYRGLSAVMRGDIALHRRTMQRVYIGACLVAGAFTLL 120
           S DLPNIAGYTPLHLLVP T+FLLYRGL+AVMRGDIA HRRTMQRVYIGACLVAG+FTLL
Sbjct: 61  SRDLPNIAGYTPLHLLVPVTSFLLYRGLAAVMRGDIAAHRRTMQRVYIGACLVAGSFTLL 120

Query: 121 PSRYLGQLIWGQWLGWL 137
           P RYLGQL+WGQWLGWL
Sbjct: 121 PQRYLGQLLWGQWLGWL 137


>ref|YP_004619811.1| membrane protein [Ramlibacter tataouinensis TTB310]
 gb|AEG93792.1| candidate membrane protein [Ramlibacter tataouinensis TTB310]
          Length = 137

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 88/135 (65%), Positives = 99/135 (73%)

Query: 1   MSLTPLIALHLSVALAAVVIGPFAFWARLGRTVRPRWHRALGYAWFSCMAATVLSALFIR 60
           M  TPLIA+H+S ALAAV +GP A WAR GRT RPR HRA GYAW + M A  LSA+FIR
Sbjct: 1   MQFTPLIAIHMSAALAAVALGPVALWARRGRTQRPRLHRAAGYAWVTLMVAAALSAVFIR 60

Query: 61  SHDLPNIAGYTPLHLLVPATAFLLYRGLSAVMRGDIALHRRTMQRVYIGACLVAGAFTLL 120
              LPNIAGYTP+HLLVPAT   L      + RGDI  HRR MQ +Y+ ACLVAGAFTLL
Sbjct: 61  DFRLPNIAGYTPIHLLVPATLGSLVIAFRLLARGDIRGHRRWMQILYVSACLVAGAFTLL 120

Query: 121 PSRYLGQLIWGQWLG 135
           P RYLG L+ G+WLG
Sbjct: 121 PGRYLGDLVLGRWLG 135


>gb|ACY24691.1| conserved hypothetical protein [uncultured organism]
          Length = 137

 Score =  134 bits (337), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 78/135 (57%), Positives = 91/135 (67%)

Query: 1   MSLTPLIALHLSVALAAVVIGPFAFWARLGRTVRPRWHRALGYAWFSCMAATVLSALFIR 60
           M LTP IA+HL+ AL A+VIGP A WAR GR  R   HRA GYAW + M  T LSALFIR
Sbjct: 1   MQLTPTIAIHLTAALGALVIGPVALWARKGRVQRQVLHRAFGYAWVTLMLITALSALFIR 60

Query: 61  SHDLPNIAGYTPLHLLVPATAFLLYRGLSAVMRGDIALHRRTMQRVYIGACLVAGAFTLL 120
              LPN+AGYTP+HLLVP   F L+     + + +I  HR  MQR+Y GAC  AG FTLL
Sbjct: 61  DFKLPNVAGYTPIHLLVPVVFFSLFGAFWLLAKKNIQGHRAIMQRLYFGACWGAGIFTLL 120

Query: 121 PSRYLGQLIWGQWLG 135
           P+RYLG L+W Q L 
Sbjct: 121 PNRYLGGLLWHQALA 135


>emb|CBA33495.1| hypothetical protein Csp_B19340 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 118

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 69/118 (58%), Positives = 81/118 (68%)

Query: 20  IGPFAFWARLGRTVRPRWHRALGYAWFSCMAATVLSALFIRSHDLPNIAGYTPLHLLVPA 79
           +GP A WAR GR  R   HRA GYAW + M AT LSALFIR +   NIAGYT +HL VP 
Sbjct: 1   MGPVALWARKGRVQRTHLHRAAGYAWVTLMLATALSALFIRDYLQFNIAGYTWIHLFVPL 60

Query: 80  TAFLLYRGLSAVMRGDIALHRRTMQRVYIGACLVAGAFTLLPSRYLGQLIWGQWLGWL 137
           T   L+    A+   DI+ H++ MQ +Y GAC+ AGAFTLLP RYLGQL+WGQWLG L
Sbjct: 61  TLAGLFGAFRALYLKDISRHQKIMQGLYFGACIGAGAFTLLPGRYLGQLVWGQWLGLL 118


>ref|YP_004489753.1| hypothetical protein DelCs14_4419 [Delftia sp. Cs1-4]
 gb|AEF91398.1| Protein of unknown function DUF2306, membrane [Delftia sp. Cs1-4]
          Length = 136

 Score =  116 bits (291), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 73/132 (55%), Positives = 87/132 (65%)

Query: 1   MSLTPLIALHLSVALAAVVIGPFAFWARLGRTVRPRWHRALGYAWFSCMAATVLSALFIR 60
           M +TPLIA+H+S AL A   G  A  AR    V PR HRA GYA+ + M    +SA FIR
Sbjct: 1   MQMTPLIAIHMSAALGATATGAIALLARRQAAVHPRLHRAAGYAFVTLMVCAAVSACFIR 60

Query: 61  SHDLPNIAGYTPLHLLVPATAFLLYRGLSAVMRGDIALHRRTMQRVYIGACLVAGAFTLL 120
            + LPN AGYTP+HLLVP T   L R    +  G+IA HR+ M+ VYIGAC+VAG FTLL
Sbjct: 61  DYRLPNWAGYTPVHLLVPLTFAGLGRSFWHLYHGNIAGHRKIMRSVYIGACVVAGLFTLL 120

Query: 121 PSRYLGQLIWGQ 132
           P RYLG L+W Q
Sbjct: 121 PGRYLGDLLWQQ 132