BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1703.p (353 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775708.1| hypothetical protein Hsero_2301 [Herbaspiril... 688 0.0 ref|YP_004387996.1| hypothetical protein Alide2_2108 [Alicycliph... 539 e-151 ref|YP_004126540.1| hypothetical protein Alide_1909 [Alicycliphi... 537 e-150 ref|ZP_08874764.1| hypothetical protein VeAt4_19705 [Verminephro... 425 e-117 ref|YP_002497545.1| hypothetical protein Mnod_2262 [Methylobacte... 362 5e-98 >ref|YP_003775708.1| hypothetical protein Hsero_2301 [Herbaspirillum seropedicae SmR1] gb|ADJ63800.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 353 Score = 688 bits (1775), Expect = 0.0, Method: Composition-based stats. Identities = 352/353 (99%), Positives = 352/353 (99%) Query: 1 MKQHGAAALTLAGLILLAGCTTPASERAQASVAVAEVGSFHIGGRQATLDGLPAKEVRFT 60 MKQHGAAALTLAGLILLAGCTTPASERAQA VAVAEVGSFHIGGRQATLDGLPAKEVRFT Sbjct: 1 MKQHGAAALTLAGLILLAGCTTPASERAQAPVAVAEVGSFHIGGRQATLDGLPAKEVRFT 60 Query: 61 PTSPLTRIDPNGEFEVGQMYVQYVRLAPAARRAPYPLLMWHGGGLSGVTWESTPDGRPGW 120 PTSPLTRIDPNGEFEVGQMYVQYVRLAPAARRAPYPLLMWHGGGLSGVTWESTPDGRPGW Sbjct: 61 PTSPLTRIDPNGEFEVGQMYVQYVRLAPAARRAPYPLLMWHGGGLSGVTWESTPDGRPGW 120 Query: 121 QMFFLRAGHDVYVSDAVERGRASWARYPELYRSEPVFRTKKEAWELFRIGPAGSYQDAAH 180 QMFFLRAGHDVYVSDAVERGRASWARYPELYRSEPVFRTKKEAWELFRIGPAGSYQDAAH Sbjct: 121 QMFFLRAGHDVYVSDAVERGRASWARYPELYRSEPVFRTKKEAWELFRIGPAGSYQDAAH 180 Query: 181 RSAYPDTQFPVAAFDQFMKQGVPRWLTNDAATEAAYDALVQRVCPCVLMVHSQGSTFAYT 240 RSAYPDTQFPVAAFDQFMKQGVPRWLTNDAATEAAYDALVQRVCPCVLMVHSQGSTFAYT Sbjct: 181 RSAYPDTQFPVAAFDQFMKQGVPRWLTNDAATEAAYDALVQRVCPCVLMVHSQGSTFAYT 240 Query: 241 LANRYPEKIKAVVGVEPSGALDPDKVDLTPLSRVPLLFVWGDKIAATPRWQGIQAPMKKM 300 LANRYPEKIKAVVGVEPSGALDPDKVDLTPLSRVPLLFVWGDKIAATPRWQGIQAPMKKM Sbjct: 241 LANRYPEKIKAVVGVEPSGALDPDKVDLTPLSRVPLLFVWGDKIAATPRWQGIQAPMKKM 300 Query: 301 IAALKAKGGRADEIDLPARGISGNSHLMMMDANSDQIAALVQDWLVAQGLAGR 353 IAALKAKGGRADEIDLPARGISGNSHLMMMDANSDQIAALVQDWLVAQGLAGR Sbjct: 301 IAALKAKGGRADEIDLPARGISGNSHLMMMDANSDQIAALVQDWLVAQGLAGR 353 >ref|YP_004387996.1| hypothetical protein Alide2_2108 [Alicycliphilus denitrificans K601] gb|AEB84480.1| hypothetical protein Alide2_2108 [Alicycliphilus denitrificans K601] Length = 355 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 261/326 (80%), Positives = 290/326 (88%) Query: 28 AQASVAVAEVGSFHIGGRQATLDGLPAKEVRFTPTSPLTRIDPNGEFEVGQMYVQYVRLA 87 Q VAVAE+GSFH GGR TL GLP KEVRFTPTSP T +DPNGEFEV QMY QYV+LA Sbjct: 30 GQGPVAVAEIGSFHTGGRSVTLSGLPKKEVRFTPTSPPTLLDPNGEFEVEQMYTQYVKLA 89 Query: 88 PAARRAPYPLLMWHGGGLSGVTWESTPDGRPGWQMFFLRAGHDVYVSDAVERGRASWARY 147 P +RRA YP+LMWHGGGL+GVTWE+ PDG+PGWQM+F+ AGHDVYVSDAVERGRASWARY Sbjct: 90 PQSRRARYPMLMWHGGGLTGVTWETKPDGQPGWQMYFVAAGHDVYVSDAVERGRASWARY 149 Query: 148 PELYRSEPVFRTKKEAWELFRIGPAGSYQDAAHRSAYPDTQFPVAAFDQFMKQGVPRWLT 207 PE+++SEPVFRTKKE WELFRIGPA SY AA R AYPDTQFP+AAFDQFMKQGVPRW+T Sbjct: 150 PEIFKSEPVFRTKKEGWELFRIGPADSYDSAASRHAYPDTQFPIAAFDQFMKQGVPRWVT 209 Query: 208 NDAATEAAYDALVQRVCPCVLMVHSQGSTFAYTLANRYPEKIKAVVGVEPSGALDPDKVD 267 ND T AYDALV +VCPCV+ VHSQGSTFAYTLA+RYP+KIKAVVGVEPSGALDPDKVD Sbjct: 210 NDEPTLRAYDALVNKVCPCVITVHSQGSTFAYTLASRYPDKIKAVVGVEPSGALDPDKVD 269 Query: 268 LTPLSRVPLLFVWGDKIAATPRWQGIQAPMKKMIAALKAKGGRADEIDLPARGISGNSHL 327 + PL+RVPLLFVWGDKI TPRWQGIQAPMKKMIAA+KA+GG+ DEIDLPA+GI GNSH+ Sbjct: 270 VAPLARVPLLFVWGDKIRETPRWQGIQAPMKKMIAAVKARGGQVDEIDLPAQGIRGNSHM 329 Query: 328 MMMDANSDQIAALVQDWLVAQGLAGR 353 +MMD NSDQ+AALVQDWLV +GLA R Sbjct: 330 IMMDRNSDQVAALVQDWLVRRGLATR 355 >ref|YP_004126540.1| hypothetical protein Alide_1909 [Alicycliphilus denitrificans BC] gb|ADU99652.1| hypothetical protein Alide_1909 [Alicycliphilus denitrificans BC] Length = 355 Score = 537 bits (1383), Expect = e-150, Method: Composition-based stats. Identities = 260/326 (79%), Positives = 289/326 (88%) Query: 28 AQASVAVAEVGSFHIGGRQATLDGLPAKEVRFTPTSPLTRIDPNGEFEVGQMYVQYVRLA 87 Q VAVAE+GSFH GGR TL GLP KEVRFTPTSP T +DPNGEFEV QMY QYV+LA Sbjct: 30 GQGPVAVAEIGSFHTGGRSVTLSGLPKKEVRFTPTSPPTLLDPNGEFEVEQMYTQYVKLA 89 Query: 88 PAARRAPYPLLMWHGGGLSGVTWESTPDGRPGWQMFFLRAGHDVYVSDAVERGRASWARY 147 P +RRA YP+LMWHGGGL+GVTWE+ PDG+PGWQM+F+ AGHDVYVSDAVERGRASWARY Sbjct: 90 PQSRRARYPMLMWHGGGLTGVTWETKPDGQPGWQMYFVAAGHDVYVSDAVERGRASWARY 149 Query: 148 PELYRSEPVFRTKKEAWELFRIGPAGSYQDAAHRSAYPDTQFPVAAFDQFMKQGVPRWLT 207 PE+++SEPVFRTKKE WELFRIGPA SY AA R AYPDTQFP+AAFDQFMKQGVPRW+T Sbjct: 150 PEIFKSEPVFRTKKEGWELFRIGPADSYDSAASRHAYPDTQFPIAAFDQFMKQGVPRWVT 209 Query: 208 NDAATEAAYDALVQRVCPCVLMVHSQGSTFAYTLANRYPEKIKAVVGVEPSGALDPDKVD 267 ND T AYDALV +VCPCV+ VHSQGSTFAYTLA+RYP+KIKAVVGVEPSGALDPDKVD Sbjct: 210 NDEPTLRAYDALVNKVCPCVITVHSQGSTFAYTLASRYPDKIKAVVGVEPSGALDPDKVD 269 Query: 268 LTPLSRVPLLFVWGDKIAATPRWQGIQAPMKKMIAALKAKGGRADEIDLPARGISGNSHL 327 + PL+RVPLLFVWGDKI TPRWQ IQAPMKKMIAA+KA+GG+ DEIDLPA+GI GNSH+ Sbjct: 270 VAPLARVPLLFVWGDKIRETPRWQSIQAPMKKMIAAVKARGGQVDEIDLPAQGIRGNSHM 329 Query: 328 MMMDANSDQIAALVQDWLVAQGLAGR 353 +MMD NSDQ+AALVQDWLV +GLA R Sbjct: 330 IMMDRNSDQVAALVQDWLVRRGLATR 355 >ref|ZP_08874764.1| hypothetical protein VeAt4_19705 [Verminephrobacter sp. At4] Length = 358 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 205/326 (62%), Positives = 250/326 (76%), Gaps = 2/326 (0%) Query: 28 AQASVAVAEVGSFHIGGRQATLDGLPAKEVRFTPTSPLTRIDPNGEFEVGQMYVQYVRLA 87 A V V EVGSFH+GGRQ TL GLP KE+ F+ + R++PNG+FEVGQMYVQY+RL Sbjct: 32 ADRVVVVKEVGSFHVGGRQVTLSGLPEKELVFSAGAAPRRVNPNGDFEVGQMYVQYIRLD 91 Query: 88 PAARRAPYPLLMWHGGGLSGVTWESTPDGRPGWQMFFLRAGHDVYVSDAVERGRASWARY 147 A+R+ YPLLMWHGGGLSGVTWES PDG+PGWQ FFL+AGHDVYVSDAVERGRASWARY Sbjct: 92 AASRKGRYPLLMWHGGGLSGVTWESKPDGQPGWQSFFLQAGHDVYVSDAVERGRASWARY 151 Query: 148 PELYRSEPVFRTKKEAWELFRIGPAGSY-QDAAHRSAYPD-TQFPVAAFDQFMKQGVPRW 205 PE++ +EPVFRTK+EAWELFRIGP GSY D R + TQFPV AFDQF KQG+PRW Sbjct: 152 PEIFETEPVFRTKQEAWELFRIGPPGSYATDPGKRQVFAQGTQFPVEAFDQFTKQGIPRW 211 Query: 206 LTNDAATEAAYDALVQRVCPCVLMVHSQGSTFAYTLANRYPEKIKAVVGVEPSGALDPDK 265 +NDAAT+AAYD VQ+VCPCV++VHSQG FA+ A R P+KI+ VV +EPSG+ DP+K Sbjct: 212 ASNDAATQAAYDQYVQKVCPCVIVVHSQGGNFAFNAALRAPDKIRGVVAIEPSGSPDPEK 271 Query: 266 VDLTPLSRVPLLFVWGDKIAATPRWQGIQAPMKKMIAALKAKGGRADEIDLPARGISGNS 325 VDL+ L +P LF+WGD + W +++ AL+ +G A IDLP G+ GNS Sbjct: 272 VDLSALKGIPFLFIWGDYLDRATLWTRASQTLERFEKALQQQGTDATRIDLPKLGVHGNS 331 Query: 326 HLMMMDANSDQIAALVQDWLVAQGLA 351 H++MMD NSD+IA VQ+WLVA+GL+ Sbjct: 332 HMLMMDRNSDEIAQRVQNWLVAKGLS 357 >ref|YP_002497545.1| hypothetical protein Mnod_2262 [Methylobacterium nodulans ORS 2060] gb|ACL57242.1| conserved hypothetical protein [Methylobacterium nodulans ORS 2060] Length = 340 Score = 362 bits (929), Expect = 5e-98, Method: Composition-based stats. Identities = 183/323 (56%), Positives = 231/323 (71%), Gaps = 5/323 (1%) Query: 28 AQASVAVAEVGSFHIGGRQATLDGLPAKEVRFTPTSPLTRIDPNGEFEVGQMYVQYVRLA 87 AQA V + E GSFH+GGRQ +L G P E FT + TR+DPNG+FEV QMYVQY L Sbjct: 21 AQAQV-LKEFGSFHVGGRQVSLSGYPVTESVFTQGAAPTRVDPNGDFEVEQMYVQY--LI 77 Query: 88 PAARRAPYPLLMWHGGGLSGVTWESTPDGRPGWQMFFLRAGHDVYVSDAVERGRASWARY 147 P +RA YPLLMWHGGGL+GVTW++ PDG+PG+ +F RAGH +YVSDAVERGRASWARY Sbjct: 78 PEPQRAMYPLLMWHGGGLTGVTWDTKPDGQPGFMQYFFRAGHPIYVSDAVERGRASWARY 137 Query: 148 PELYRSEPVFRTKKEAWELFRIGPAGSYQDAAHRSAYPDTQFPVAAFDQFMKQGVPRWLT 207 PE+Y++ P FRTKKEAWE FRIGP + D + R+A P +FPV AFD+F KQ VPRW + Sbjct: 138 PEIYKTAPFFRTKKEAWEQFRIGPIYA-TDPSERAAMPGGKFPVQAFDRFAKQFVPRWTS 196 Query: 208 NDAATEAAYDALVQRVCPCVLMVHSQGSTFAYTLANRYPEKIKAVVGVEPSGALDPDKVD 267 ND T+ AYDAL+Q+V P V+MVHSQ F + A P+K+KA++ +EP+GA P D Sbjct: 197 NDGITQRAYDALIQKVGPAVVMVHSQAGNFGFHAALNAPDKVKALIAIEPAGAPAPGP-D 255 Query: 268 LTPLSRVPLLFVWGDKIAATPRWQGIQAPMKKMIAALKAKGGRADEIDLPARGISGNSHL 327 L L+ +P+L +WGD I P W Q K A LKA+GG + I+LP GI+GN H+ Sbjct: 256 LDRLTAIPMLIIWGDNIEREPVWVRQQPFSLKFAADLKARGGDVEVIELPKVGITGNDHM 315 Query: 328 MMMDANSDQIAALVQDWLVAQGL 350 +MMD NSDQIA L++DW+ +GL Sbjct: 316 IMMDTNSDQIAGLIEDWMKRKGL 338