BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1701.p (596 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775706.1| methyl-accepting chemotaxis transducer trans... 681 0.0 gb|AAK83219.1|AF338038_2 putative methyl-accepting chemotaxis pr... 558 e-156 ref|YP_004215574.1| methyl-accepting chemotaxis sensory transduc... 546 e-153 ref|YP_003743272.1| methyl-accepting chemotaxis protein [Erwinia... 504 e-140 ref|YP_004114731.1| methyl-accepting chemotaxis sensory transduc... 499 e-139 >ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ63798.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 681 bits (1757), Expect = 0.0, Method: Composition-based stats. Identities = 447/535 (83%), Positives = 485/535 (90%), Gaps = 6/535 (1%) Query: 1 MFAYFGNLKVGARLAIVFAFIVALLAVVSITAFIKINNINRAIDQIVNDRYLKVRWAFDL 60 MFAYF NLKV RLA VFAFIVALLAVVS+TAFIKINNINRAIDQIVNDRYLKVRWAFDL Sbjct: 1 MFAYFKNLKVAVRLAAVFAFIVALLAVVSVTAFIKINNINRAIDQIVNDRYLKVRWAFDL 60 Query: 61 RDGVNEQIKYLRGMAIDIGNPAANEKRIGQLDVAVRASKEALDKITARQVTAVGQKKAKA 120 RDGVNEQIKYLRG+AIDI N ANEKR QL+VAV+ +KEALDKITARQVTAVGQKKAKA Sbjct: 61 RDGVNEQIKYLRGIAIDIENRPANEKRFAQLEVAVKQTKEALDKITARQVTAVGQKKAKA 120 Query: 121 LDDARQLFETSRTQFLALIRAGQGDAADEFVLRKITDSQNAYLSLATAFADSQDSQLRAE 180 LD+AR F+ S+ FLAL++AG +ADE+VLRKITD+QN YL+LA AFADSQD+QL+AE Sbjct: 121 LDEARIAFDASKADFLALVKAGNSTSADEYVLRKITDTQNNYLALARAFADSQDAQLQAE 180 Query: 181 GAQAVADGALAIQVTLACSAVAVLAAILLGYLMVRSIVKPLNEAVRVAENVAAGDLTTRI 240 GA+AVADGA+AI+VTLACS AVLAAI+LGYLM RSIVKPL EAVRVAENVAAGDLTTRI Sbjct: 181 GAKAVADGAMAIEVTLACSMAAVLAAIILGYLMARSIVKPLTEAVRVAENVAAGDLTTRI 240 Query: 241 EPHSKDETGQLMAALRKMNDNLVDIVSGVRRGTDSIATASGEIASGNLDLSARTEQQAGS 300 EPHS+DETGQLM ALRKMNDNL++IVSGVRRGT+SI TASGEIASGNLDLSARTEQQAGS Sbjct: 241 EPHSRDETGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGS 300 Query: 301 LEETASAMEEMTSTVRQNADNARQANQLAATASEVALQGGEIVGRVVTTMEEINQSSRKI 360 LEETASAMEEMTSTVRQNADNARQANQ+A +ASE+ALQGG+IVGRVV TM+EINQSSRKI Sbjct: 301 LEETASAMEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKI 360 Query: 361 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKSLI 420 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSAAAAKEIK+LI Sbjct: 361 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALI 420 Query: 421 DDSVAKVEGGSLLVAEAGHTMEQVVSSVRSVTDIVGEISAASVEQSTGIEEINRAVGQMD 480 DSV KVEGGS LVA+AG TMEQVVSSVRSVTDIV EISAAS EQS+GIEEINRAV QMD Sbjct: 421 ADSVGKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMD 480 Query: 481 ESTQQNAALVEQAAAAAGALQDQAANLATAISIFKLAQGPQVTVAAPAKPAAPVR 535 E TQQNAALVEQAAAAA ++Q+QA L +ISIFKL QG A + PAAPVR Sbjct: 481 EGTQQNAALVEQAAAAAKSMQEQAVRLTQSISIFKLEQG------AASIPAAPVR 529 >gb|AAK83219.1|AF338038_2 putative methyl-accepting chemotaxis protein I [Rahnella aquatilis] Length = 554 Score = 558 bits (1437), Expect = e-156, Method: Composition-based stats. Identities = 356/537 (66%), Positives = 435/537 (81%), Gaps = 3/537 (0%) Query: 1 MFAYFGNLKVGARLAIVFAFIVALLAVVSITAFIKINNINRAIDQIVNDRYLKVRWAFDL 60 MF N++VGARL F+ ++ LL +VS+TA KI++IN +I+QI++DRY+KVR AFD+ Sbjct: 1 MFKAINNMRVGARLGAAFSLVILLLIIVSVTAVTKISSINSSIEQIISDRYVKVRLAFDV 60 Query: 61 RDGVNEQIKYLRGMAIDIGNPAANEKRIGQLDVAVRASKEALDKITARQVTAVGQKKAKA 120 RDGVN+QIKYLRG+ ID NP N KR QLD +V+ + A+DKI A Q T VG++K KA Sbjct: 61 RDGVNDQIKYLRGIVIDTKNPEQNNKRYLQLDDSVKQTNLAMDKIAAIQTTVVGKQKIKA 120 Query: 121 LDDARQLFETSRTQFLALIRAGQGDAADEFVLRKITDSQNAYLSLATAFADSQDSQLRAE 180 L DA +FE ++ Q +AL RAG D A EFVLRK+T SQNAYL LA+AFA+SQD QL+AE Sbjct: 121 LQDASDIFEAAKEQLVALARAGDMDGATEFVLRKLTTSQNAYLDLASAFANSQDQQLQAE 180 Query: 181 GAQAVADGALAIQVTLACSAVAVLAAILLGYLMVRSIVKPLNEAVRVAENVAAGDLTTRI 240 G +A+ADG AIQ+TL S +A+L A LG+ + RSI +PL+ AV+VAENVAAGDLTT+I Sbjct: 181 GKKAIADGHNAIQLTLIFSVLAILVAAALGFFLTRSITRPLHTAVKVAENVAAGDLTTQI 240 Query: 241 EPHSKDETGQLMAALRKMNDNLVDIVSGVRRGTDSIATASGEIASGNLDLSARTEQQAGS 300 + S DETGQLM L+ MN+NL+ IV+ VR GT++I +ASGEIA+GNLDLS+RTEQQA S Sbjct: 241 QVTSGDETGQLMQGLKNMNENLLKIVTEVRAGTNAIHSASGEIAAGNLDLSSRTEQQASS 300 Query: 301 LEETASAMEEMTSTVRQNADNARQANQLAATASEVALQGGEIVGRVVTTMEEINQSSRKI 360 LEETASAME+MT+TV+QNADNARQANQLAA AS VA+QGGE+VG VV TME IN SSRKI Sbjct: 301 LEETASAMEQMTATVKQNADNARQANQLAAQASRVAVQGGEVVGEVVNTMEGINASSRKI 360 Query: 361 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKSLI 420 VDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAKEIK LI Sbjct: 361 VDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSASAAKEIKVLI 420 Query: 421 DDSVAKVEGGSLLVAEAGHTMEQVVSSVRSVTDIVGEISAASVEQSTGIEEINRAVGQMD 480 DDSVAKV+ G+ LVA+AG TM +VVSSV+SVTDIVGEI+ AS EQSTGIEEIN+A+ QMD Sbjct: 421 DDSVAKVDNGTQLVAKAGSTMAEVVSSVKSVTDIVGEIAIASNEQSTGIEEINKAITQMD 480 Query: 481 ESTQQNAALVEQAAAAAGALQDQAANLATAISIFKLAQGPQVTVAAPAKPAAPVRPP 537 E TQQNAALV++A++AA +L +QA L+ AISIFK++ G + A + AA + P Sbjct: 481 EVTQQNAALVQEASSAAYSLNEQAERLSQAISIFKVSAG---SATAAVRKAAHAKTP 534 >ref|YP_004215574.1| methyl-accepting chemotaxis sensory transducer [Rahnella sp. Y9602] gb|ADW76447.1| methyl-accepting chemotaxis sensory transducer [Rahnella sp. Y9602] Length = 554 Score = 546 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 356/545 (65%), Positives = 433/545 (79%), Gaps = 1/545 (0%) Query: 1 MFAYFGNLKVGARLAIVFAFIVALLAVVSITAFIKINNINRAIDQIVNDRYLKVRWAFDL 60 MF N++VGARL F+ ++ LL +VS A KI++IN +I+QI++DRY+KVR AFD+ Sbjct: 1 MFKLINNMRVGARLGAAFSLVILLLVIVSGIAITKISSINTSIEQIISDRYVKVRLAFDV 60 Query: 61 RDGVNEQIKYLRGMAIDIGNPAANEKRIGQLDVAVRASKEALDKITARQVTAVGQKKAKA 120 RDGVN+QIKYLRG+ ID NP N+KR QLD V+ + A+DKI A Q T G++K K Sbjct: 61 RDGVNDQIKYLRGIVIDTKNPEQNKKRYLQLDDTVKKTNLAMDKIAAIQSTVTGKQKIKT 120 Query: 121 LDDARQLFETSRTQFLALIRAGQGDAADEFVLRKITDSQNAYLSLATAFADSQDSQLRAE 180 L +A + FET++ Q +AL RAG D A EFVLRK+T SQNAYL LATAFA+SQD QL+AE Sbjct: 121 LQEAGETFETAKEQLIALARAGDMDGATEFVLRKLTTSQNAYLDLATAFANSQDQQLQAE 180 Query: 181 GAQAVADGALAIQVTLACSAVAVLAAILLGYLMVRSIVKPLNEAVRVAENVAAGDLTTRI 240 G A+ADGA AIQ+TL SA+A+L A LGY + RSI +PL+ AV+VAENVAAGDLTT+I Sbjct: 181 GKTAIADGATAIQLTLIFSALAILMAAALGYFLTRSITRPLHTAVKVAENVAAGDLTTQI 240 Query: 241 EPHSKDETGQLMAALRKMNDNLVDIVSGVRRGTDSIATASGEIASGNLDLSARTEQQAGS 300 + S+DETGQLM L+ MN+NL+ IV+ VR GT++I +AS EIA+GNLDLS+RTEQQA S Sbjct: 241 QVMSQDETGQLMQGLKNMNENLLKIVTEVRAGTNAITSASSEIAAGNLDLSSRTEQQASS 300 Query: 301 LEETASAMEEMTSTVRQNADNARQANQLAATASEVALQGGEIVGRVVTTMEEINQSSRKI 360 LEETASAME+MT+TV+QNADNARQAN LAA AS VA+QGGE+VG VV TME IN SSRKI Sbjct: 301 LEETASAMEQMTATVKQNADNARQANLLAAQASRVAVQGGEVVGEVVNTMEGINTSSRKI 360 Query: 361 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKSLI 420 VDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAKEIK LI Sbjct: 361 VDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSASAAKEIKVLI 420 Query: 421 DDSVAKVEGGSLLVAEAGHTMEQVVSSVRSVTDIVGEISAASVEQSTGIEEINRAVGQMD 480 DDSVAKV+ G+ LVA+AG TM +VVSSV++VTDIVGEI+ AS EQSTGIEEIN+A+ QMD Sbjct: 421 DDSVAKVDNGTQLVAKAGATMAEVVSSVKNVTDIVGEIAIASNEQSTGIEEINKAITQMD 480 Query: 481 ESTQQNAALVEQAAAAAGALQDQAANLATAISIFKLAQGPQVTVAAPA-KPAAPVRPPVR 539 E TQQNAALV++A++AA +L +QA L+ AISIFK++ G A + +P R Sbjct: 481 EVTQQNAALVQEASSAAYSLNEQAERLSQAISIFKVSAGSATAAVRKAGQTKSPALLSNR 540 Query: 540 PPVLA 544 PV A Sbjct: 541 QPVPA 545 >ref|YP_003743272.1| methyl-accepting chemotaxis protein [Erwinia billingiae Eb661] emb|CAX61425.1| methyl-accepting chemotaxis protein [Erwinia billingiae Eb661] Length = 526 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 335/510 (65%), Positives = 406/510 (79%) Query: 7 NLKVGARLAIVFAFIVALLAVVSITAFIKINNINRAIDQIVNDRYLKVRWAFDLRDGVNE 66 N+KVG RL F+ ++ LL +VS+TA +KIN IN A+ IV+DRY+KVR AFD+RDGVN+ Sbjct: 6 NMKVGVRLGAAFSLVILLLIIVSVTAVVKINTINDAVSSIVSDRYIKVRLAFDVRDGVND 65 Query: 67 QIKYLRGMAIDIGNPAANEKRIGQLDVAVRASKEALDKITARQVTAVGQKKAKALDDARQ 126 QIK+LRGM ID P N KR GQL A + A+ KI Q T VG KK +A+ +A Q Sbjct: 66 QIKFLRGMVIDTTRPQYNVKRFGQLTDATDKTNLAVGKIAQLQTTPVGIKKIQAVKEAAQ 125 Query: 127 LFETSRTQFLALIRAGQGDAADEFVLRKITDSQNAYLSLATAFADSQDSQLRAEGAQAVA 186 FET+++ L +IRAG+ D A EF L+K+T +QN YL+LA+AFADSQ QL AEGA A Sbjct: 126 TFETAKSTLLEMIRAGKQDEAAEFALQKMTPAQNTYLNLASAFADSQSQQLVAEGALAGT 185 Query: 187 DGALAIQVTLACSAVAVLAAILLGYLMVRSIVKPLNEAVRVAENVAAGDLTTRIEPHSKD 246 +G AIQ+TL SA+A+LAA+LLGY + RSIV+PL EAV +AENVAAGDL T I +S D Sbjct: 186 EGNSAIQITLIFSALAILAAVLLGYFLARSIVRPLREAVTIAENVAAGDLRTVIRVNSTD 245 Query: 247 ETGQLMAALRKMNDNLVDIVSGVRRGTDSIATASGEIASGNLDLSARTEQQAGSLEETAS 306 ETGQLM AL+ MN+NL+ IV+ VR GTD I AS EI++GN+DLS+RTEQQA SLEETAS Sbjct: 246 ETGQLMQALKHMNENLLRIVTEVRSGTDLIHNASSEISAGNMDLSSRTEQQASSLEETAS 305 Query: 307 AMEEMTSTVRQNADNARQANQLAATASEVALQGGEIVGRVVTTMEEINQSSRKIVDIIGV 366 AME+MTSTV+QNADNARQAN+LAA AS+VA Q G+ V +VV+TME IN SSRKIVDII V Sbjct: 306 AMEQMTSTVKQNADNARQANELAALASKVASQSGDAVKQVVSTMEMINGSSRKIVDIISV 365 Query: 367 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKSLIDDSVAK 426 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AAKEI LI+DSV+K Sbjct: 366 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIAQLIEDSVSK 425 Query: 427 VEGGSLLVAEAGHTMEQVVSSVRSVTDIVGEISAASVEQSTGIEEINRAVGQMDESTQQN 486 V+ G VA+AG TME+V+SSV+SVT I+GEIS AS EQSTGI EI+ A+ QMD+ TQQN Sbjct: 426 VDEGGKQVAKAGTTMEEVLSSVKSVTAIMGEISIASSEQSTGINEISMAITQMDQVTQQN 485 Query: 487 AALVEQAAAAAGALQDQAANLATAISIFKL 516 AALV Q+A+AA +LQ+QA L+ AIS+FK+ Sbjct: 486 AALVNQSASAAQSLQEQAEQLSRAISVFKV 515 >ref|YP_004114731.1| methyl-accepting chemotaxis sensory transducer [Pantoea sp. At-9b] gb|ADU68175.1| methyl-accepting chemotaxis sensory transducer [Pantoea sp. At-9b] Length = 524 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 322/520 (61%), Positives = 401/520 (77%) Query: 5 FGNLKVGARLAIVFAFIVALLAVVSITAFIKINNINRAIDQIVNDRYLKVRWAFDLRDGV 64 F NLKVG RL I F +VALL VV IT+ KI+NI I IV DRY+KVR A+D+RDGV Sbjct: 4 FKNLKVGVRLGIAFGLVVALLVVVGITSITKISNIKNGITSIVEDRYVKVRLAYDVRDGV 63 Query: 65 NEQIKYLRGMAIDIGNPAANEKRIGQLDVAVRASKEALDKITARQVTAVGQKKAKALDDA 124 N+QIKYLRG+ ID P N KR QL A + A+ KI A Q+TAVG+KK L DA Sbjct: 64 NDQIKYLRGIVIDTHRPENNVKRFQQLAEATDRTNSAMKKIEAIQITAVGKKKIAGLLDA 123 Query: 125 RQLFETSRTQFLALIRAGQGDAADEFVLRKITDSQNAYLSLATAFADSQDSQLRAEGAQA 184 LFE + Q +AL+++G +A+ FVL+KITD+QN YL A AFA SQ QL+ EG Sbjct: 124 SHLFEQQKDQLVALVKSGDLEASSTFVLKKITDTQNTYLDSANAFAASQSEQLQNEGISI 183 Query: 185 VADGALAIQVTLACSAVAVLAAILLGYLMVRSIVKPLNEAVRVAENVAAGDLTTRIEPHS 244 +ADG+ AI VTL SAVA++A+I+LG+L+ RSIV+PLNEAV +A VAAGDL+T IE S Sbjct: 184 IADGSTAIMVTLIFSAVAIVASIILGFLLTRSIVRPLNEAVEIAGKVAAGDLSTHIEVKS 243 Query: 245 KDETGQLMAALRKMNDNLVDIVSGVRRGTDSIATASGEIASGNLDLSARTEQQAGSLEET 304 DETG LM AL+ MNDNL+ IV+ VR G+D+IA AS +I+SGNLDLS+RTEQQA SLEET Sbjct: 244 TDETGVLMRALQSMNDNLLTIVTDVRAGSDTIAVASNQISSGNLDLSSRTEQQASSLEET 303 Query: 305 ASAMEEMTSTVRQNADNARQANQLAATASEVALQGGEIVGRVVTTMEEINQSSRKIVDII 364 ASAME+MTSTV+ NA+NAR+AN+L A S+VA +GG ++ +V+ ME I SS+KIVDII Sbjct: 304 ASAMEQMTSTVKHNAENAREANKLVANTSDVAKEGGVVMEQVIEKMEAIALSSKKIVDII 363 Query: 365 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKSLIDDSV 424 VID IAFQTNIL+LNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAKEIK LI+DSV Sbjct: 364 SVIDSIAFQTNILSLNAAVEAARAGEQGRGFAVVASEVRNLAQRSASAAKEIKVLIEDSV 423 Query: 425 AKVEGGSLLVAEAGHTMEQVVSSVRSVTDIVGEISAASVEQSTGIEEINRAVGQMDESTQ 484 AKV+ GS LV+ AG T+ +VV+SV+SV DI+ EI+ AS EQS+GI EIN A+ QM+ TQ Sbjct: 424 AKVDEGSRLVSHAGSTIGEVVNSVKSVADIMSEITIASSEQSSGISEINLAITQMEAVTQ 483 Query: 485 QNAALVEQAAAAAGALQDQAANLATAISIFKLAQGPQVTV 524 QNAALV++A+AA+ ALQ+QA LA ++S+FK G +++V Sbjct: 484 QNAALVQEASAASQALQEQAERLAQSMSVFKTGHGMELSV 523