BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1700.p (130 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775705.1| sugar ABC transporter auxiliary component pr... 187 6e-46 ref|YP_004754742.1| ribose ABC transport system, high affinity p... 159 2e-37 ref|ZP_08273304.1| Ribose ABC transport system, high affinity pe... 151 3e-35 ref|YP_001669714.1| D-ribose pyranase [Pseudomonas putida GB-1] ... 143 9e-33 ref|NP_744607.1| D-ribose pyranase [Pseudomonas putida KT2440] >... 141 3e-32 >ref|YP_003775705.1| sugar ABC transporter auxiliary component protein [Herbaspirillum seropedicae SmR1] gb|ADJ63797.1| ABC-type sugar transport system, auxiliary component protein [Herbaspirillum seropedicae SmR1] Length = 130 Score = 187 bits (474), Expect = 6e-46, Method: Composition-based stats. Identities = 105/130 (80%), Positives = 116/130 (89%) Query: 1 MKKTALLNAAISQVIATMGHGDTLVIGDVGLPAPAGVPVIDLAVTRGVPDFMTVLKTVLT 60 MKKTALLNAAISQVIATMGHGDTLVIGDVGLP P GVPVIDLAVTRGVP F+TVL+TVL+ Sbjct: 1 MKKTALLNAAISQVIATMGHGDTLVIGDVGLPVPPGVPVIDLAVTRGVPGFLTVLETVLS 60 Query: 61 ELQVEFHVVADEMQTVSPALAAQIAALDLPQARTLSHEAFKQATAAAKAYIRTGECTPYA 120 ELQVEFHVVADE+ VSP LAAQI AL+L R++SHE+FK+ T A+A IRTGECTPYA Sbjct: 61 ELQVEFHVVADELAQVSPMLAAQITALELAGKRSVSHESFKEQTRRARAVIRTGECTPYA 120 Query: 121 NIILGAGVVF 130 NIILG+GVVF Sbjct: 121 NIILGSGVVF 130 >ref|YP_004754742.1| ribose ABC transport system, high affinity permease RbsD [Collimonas fungivorans Ter331] gb|AEK63919.1| Ribose ABC transport system, high affinity permease RbsD [Collimonas fungivorans Ter331] Length = 136 Score = 159 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 85/130 (65%), Positives = 103/130 (79%) Query: 1 MKKTALLNAAISQVIATMGHGDTLVIGDVGLPAPAGVPVIDLAVTRGVPDFMTVLKTVLT 60 MKK+ LLN A+SQ+IA++GHG+++VIGD GLP P GVP+IDLA+TRGVP FM L+T++T Sbjct: 7 MKKSPLLNIALSQLIASLGHGESIVIGDAGLPVPPGVPLIDLALTRGVPGFMDTLQTIMT 66 Query: 61 ELQVEFHVVADEMQTVSPALAAQIAALDLPQARTLSHEAFKQATAAAKAYIRTGECTPYA 120 E+QVE HV+ADE+ SP LA QI AL L RTL H FK+ T +AKA IRTGE TPYA Sbjct: 67 EMQVEHHVLADELPLHSPQLAQQIEALGLVDKRTLPHADFKRMTHSAKAVIRTGEFTPYA 126 Query: 121 NIILGAGVVF 130 NIIL AGVVF Sbjct: 127 NIILVAGVVF 136 >ref|ZP_08273304.1| Ribose ABC transport system, high affinity permease RbsD [Oxalobacteraceae bacterium IMCC9480] gb|EGF33231.1| Ribose ABC transport system, high affinity permease RbsD [Oxalobacteraceae bacterium IMCC9480] Length = 130 Score = 151 bits (381), Expect = 3e-35, Method: Composition-based stats. Identities = 82/130 (63%), Positives = 103/130 (79%) Query: 1 MKKTALLNAAISQVIATMGHGDTLVIGDVGLPAPAGVPVIDLAVTRGVPDFMTVLKTVLT 60 MKKT LLN A+SQ+IA++GHGD +VIGD GLP P GVP+IDLA+TRG+P + L+ +LT Sbjct: 1 MKKTPLLNIALSQLIASLGHGDAIVIGDAGLPVPPGVPLIDLALTRGIPGLLDTLRAILT 60 Query: 61 ELQVEFHVVADEMQTVSPALAAQIAALDLPQARTLSHEAFKQATAAAKAYIRTGECTPYA 120 E+QVE HV+A E+ SPA+A+ IAALDLP T+SH FKQ T +A+A +RTGECTPYA Sbjct: 61 EMQVEQHVLASELALHSPAMASAIAALDLPGRLTMSHADFKQTTRSARAIVRTGECTPYA 120 Query: 121 NIILGAGVVF 130 NI+L AGV F Sbjct: 121 NIVLVAGVAF 130 >ref|YP_001669714.1| D-ribose pyranase [Pseudomonas putida GB-1] sp|B0KKS4|RBSD_PSEPG RecName: Full=D-ribose pyranase gb|ABY99378.1| RbsD or FucU transport [Pseudomonas putida GB-1] Length = 132 Score = 143 bits (360), Expect = 9e-33, Method: Composition-based stats. Identities = 79/132 (59%), Positives = 96/132 (72%), Gaps = 2/132 (1%) Query: 1 MKKTALLNAAISQVIATMGHGDTLVIGDVGLPAPAGVPVIDLAVTRGVPDFMTVLKTVLT 60 MKKT LLN A+S+VIA MGHGD LVIGD GLP P GV +IDLAVT G+PDF +VL+ VL+ Sbjct: 1 MKKTPLLNVALSRVIAGMGHGDILVIGDAGLPVPPGVEMIDLAVTPGLPDFASVLRAVLS 60 Query: 61 ELQVEFHVVADEMQTVSPALAAQIAAL--DLPQARTLSHEAFKQATAAAKAYIRTGECTP 118 ELQVE HV+A+EMQ V P +I L L + LSHE FK + +A+A +RTGEC P Sbjct: 61 ELQVERHVLAEEMQKVVPPALVEIERLKGKLGKREWLSHENFKVLSRSARAVVRTGECQP 120 Query: 119 YANIILGAGVVF 130 Y+NI L +GV F Sbjct: 121 YSNIALISGVTF 132 >ref|NP_744607.1| D-ribose pyranase [Pseudomonas putida KT2440] ref|YP_001268541.1| D-ribose pyranase [Pseudomonas putida F1] sp|Q88K33|RBSD_PSEPK RecName: Full=D-ribose pyranase sp|A5W5E7|RBSD_PSEP1 RecName: Full=D-ribose pyranase gb|AAN68071.1|AE016439_6 ribose ABC transporter, periplasmic ribose-binding protein [Pseudomonas putida KT2440] gb|ABQ79357.1| RbsD or FucU transport [Pseudomonas putida F1] gb|ADR60818.1| D-ribose pyranase [Pseudomonas putida BIRD-1] Length = 132 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 77/132 (58%), Positives = 96/132 (72%), Gaps = 2/132 (1%) Query: 1 MKKTALLNAAISQVIATMGHGDTLVIGDVGLPAPAGVPVIDLAVTRGVPDFMTVLKTVLT 60 MKKT LLN A+S+VIA MGHGD LVIGD GLP P GV +IDLA+T G+PDF +VL+ VL+ Sbjct: 1 MKKTPLLNVALSRVIAGMGHGDILVIGDAGLPVPPGVELIDLAITPGLPDFASVLRVVLS 60 Query: 61 ELQVEFHVVADEMQTVSPALAAQIAAL--DLPQARTLSHEAFKQATAAAKAYIRTGECTP 118 ELQVE HV+A+EMQ V P +I L L + L+HE FK + +A+A +RTGEC P Sbjct: 61 ELQVERHVLAEEMQKVVPPALVEIERLKGKLGKREWLTHEDFKVLSRSARAVVRTGECQP 120 Query: 119 YANIILGAGVVF 130 Y+NI L +GV F Sbjct: 121 YSNIALISGVTF 132