BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1698.p (337 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775703.1| transcription regulator DNA-binding represso... 611 e-173 ref|YP_004754744.1| ribose operon repressor [Collimonas fungivor... 411 e-113 ref|ZP_08273306.1| Ribose operon repressor [Oxalobacteraceae bac... 384 e-105 ref|YP_002873707.1| putative ribose operon repressor [Pseudomona... 340 2e-91 gb|ADR60820.1| RbsR [Pseudomonas putida BIRD-1] 337 1e-90 >ref|YP_003775703.1| transcription regulator DNA-binding repressor protein [Herbaspirillum seropedicae SmR1] gb|ADJ63795.1| transcription regulator DNA-binding repressor protein [Herbaspirillum seropedicae SmR1] Length = 337 Score = 611 bits (1575), Expect = e-173, Method: Composition-based stats. Identities = 318/337 (94%), Positives = 324/337 (96%) Query: 1 MATIKDVARLAGVSYTTVSHVLNQTRPVSSDARERVLAAVKELDYVPSALARSLRSKVTG 60 MATIKDVARLAGVSYTTVSHVLNQTRPVSSDARERVLAAVKELDYVPSALARSLRSKVTG Sbjct: 1 MATIKDVARLAGVSYTTVSHVLNQTRPVSSDARERVLAAVKELDYVPSALARSLRSKVTG 60 Query: 61 SIGLIIPNNTNPYFSELARGIEDHCYGAGYSVILCNSDDDPDKQRDYLQVLQTKRCDGLI 120 SIGLIIPNNTNPYFSELARGIEDHCYGAGYSVILCNSDDDPDKQRDYLQVLQTK CDGLI Sbjct: 61 SIGLIIPNNTNPYFSELARGIEDHCYGAGYSVILCNSDDDPDKQRDYLQVLQTKHCDGLI 120 Query: 121 IATLNQADLNPAGRLDIPTVLLDRAPKELDIDLVSTDNALGGSLAARHLLDLQRRHVACI 180 IATLNQADLNPAG+LDIPTVLLDRAPKELDIDLVSTDNA+GGSLAARHLLDL+R VACI Sbjct: 121 IATLNQADLNPAGKLDIPTVLLDRAPKELDIDLVSTDNAVGGSLAARHLLDLRRCRVACI 180 Query: 181 AGPDGLELSDERVQGFRQTLQAGGLALADGDLLHADFSGIGGYQAAMQLLQGRAQGARPD 240 AGPDGLELSDERV+GFRQTL+ GGLALAD DLLHADFSGIGGYQAAM+LLQGR RPD Sbjct: 181 AGPDGLELSDERVRGFRQTLEQGGLALADSDLLHADFSGIGGYQAAMRLLQGRPADQRPD 240 Query: 241 AIFCCNDMMAIGVLRAAGELQIEVPGELSVVGFDDIELAQFVHPPLTTVAQNTRKLGNLT 300 AIFCCNDMMAIGVLRAAGELQIEVPGELSVVGFDDIELAQFVHPPLTTVAQNTRKLGNLT Sbjct: 241 AIFCCNDMMAIGVLRAAGELQIEVPGELSVVGFDDIELAQFVHPPLTTVAQNTRKLGNLT 300 Query: 301 AQFLLERIADPGLPARRETVAPQLQLRGSTAPLKKPT 337 AQFLLERIADP LPARRETVAPQLQLRGSTAP PT Sbjct: 301 AQFLLERIADPSLPARRETVAPQLQLRGSTAPRVNPT 337 >ref|YP_004754744.1| ribose operon repressor [Collimonas fungivorans Ter331] gb|AEK63921.1| Ribose operon repressor [Collimonas fungivorans Ter331] Length = 335 Score = 411 bits (1056), Expect = e-113, Method: Composition-based stats. Identities = 230/332 (69%), Positives = 263/332 (79%), Gaps = 2/332 (0%) Query: 1 MATIKDVARLAGVSYTTVSHVLNQTRPVSSDARERVLAAVKELDYVPSALARSLRSKVTG 60 MATIKDVAR AGVSYTTVSHVLNQTRPVS+DAR RVLAAV+ + YVPSALARSL+SK TG Sbjct: 1 MATIKDVARTAGVSYTTVSHVLNQTRPVSADARARVLAAVEAMAYVPSALARSLKSKATG 60 Query: 61 SIGLIIPNNTNPYFSELARGIEDHCYGAGYSVILCNSDDDPDKQRDYLQVLQTKRCDGLI 120 SIGLIIPNNTNPYFSE+ARGIED CY AGYSVILCNSDDDP KQRDYL VL TKRCDGLI Sbjct: 61 SIGLIIPNNTNPYFSEVARGIEDSCYTAGYSVILCNSDDDPAKQRDYLNVLLTKRCDGLI 120 Query: 121 IATLNQADLNPAGRLDIPTVLLDRAPKELDIDLVSTDNALGGSLAARHLLDLQRRHVACI 180 +ATL Q D ++ +PTVLLDRAPK++ IDLV+ DNA GG+LAA HLL L RR +ACI Sbjct: 121 VATLAQTDGELLRKMKVPTVLLDRAPKDMAIDLVAVDNAAGGALAAAHLLSLGRRRIACI 180 Query: 181 AGPDGLELSDERVQGFRQTLQAGGLALADGDLLHADFSGIGGYQAAMQLLQGRAQ--GAR 238 GP + +S ER+ G RQTL A G+ L + L +ADF+ GGY AA LL A Sbjct: 181 GGPQDIAISRERIGGLRQTLLAAGVTLPEPLLAYADFTSAGGYLAARSLLARFASVPSQA 240 Query: 239 PDAIFCCNDMMAIGVLRAAGELQIEVPGELSVVGFDDIELAQFVHPPLTTVAQNTRKLGN 298 PDAIFCCND+MAIG LRAA E I VP L+VVGFDDI+LAQFVHP LT+VAQNTR+LG Sbjct: 241 PDAIFCCNDLMAIGALRAAAEFGIAVPEALAVVGFDDIDLAQFVHPTLTSVAQNTRRLGQ 300 Query: 299 LTAQFLLERIADPGLPARRETVAPQLQLRGST 330 LTA+ LL+RIA P P +R ++AP+L +RGST Sbjct: 301 LTAECLLQRIATPDRPLQRLSIAPELHIRGST 332 >ref|ZP_08273306.1| Ribose operon repressor [Oxalobacteraceae bacterium IMCC9480] gb|EGF33233.1| Ribose operon repressor [Oxalobacteraceae bacterium IMCC9480] Length = 332 Score = 384 bits (987), Expect = e-105, Method: Composition-based stats. Identities = 211/330 (63%), Positives = 247/330 (74%), Gaps = 1/330 (0%) Query: 1 MATIKDVARLAGVSYTTVSHVLNQTRPVSSDARERVLAAVKELDYVPSALARSLRSKVTG 60 MATIK VA++AGVS+TTVSHV+N TRPVS+DAR RVLAA+ +L YVPSALARSL+S+ TG Sbjct: 1 MATIKQVAQVAGVSFTTVSHVINLTRPVSADARARVLAAIAQLHYVPSALARSLKSQRTG 60 Query: 61 SIGLIIPNNTNPYFSELARGIEDHCYGAGYSVILCNSDDDPDKQRDYLQVLQTKRCDGLI 120 +IGLIIPNNTNPYFSE+ARGIEDHCYGAGYSVILCN DDP +QR+YL VL KRCDGLI Sbjct: 61 TIGLIIPNNTNPYFSEVARGIEDHCYGAGYSVILCNFGDDPARQRNYLNVLLGKRCDGLI 120 Query: 121 IATLNQADLNPAGRLDIPTVLLDRAPKELDIDLVSTDNALGGSLAARHLLDLQRRHVACI 180 +A L AD IP VLLDRAP+ D+V DN GG LAA+HLL L RR +ACI Sbjct: 121 MAALAPADGELLHTKKIPVVLLDRAPRGQSFDVVDVDNVAGGVLAAQHLLALGRRRIACI 180 Query: 181 AGPDGLELSDERVQGFRQTLQAGGLALADGDLLHADFSGIGGYQAAMQLLQGRAQGARPD 240 GP + LS R+ G R TL GL LA +ADF+ +GGYQ A LL RPD Sbjct: 181 GGPQEITLSRLRLDGLRATLAEAGLPLAPALCRYADFTSMGGYQQARALLA-LPAAQRPD 239 Query: 241 AIFCCNDMMAIGVLRAAGELQIEVPGELSVVGFDDIELAQFVHPPLTTVAQNTRKLGNLT 300 AIFCCND+MAIGVLRAA E I VP L+VVGFDDI+LA+FV+P L++VAQNTR LG LT Sbjct: 240 AIFCCNDLMAIGVLRAAAEAGIAVPQALAVVGFDDIDLARFVYPALSSVAQNTRALGQLT 299 Query: 301 AQFLLERIADPGLPARRETVAPQLQLRGST 330 AQ LL RIA+P LP ++ T+ P L +R S+ Sbjct: 300 AQCLLARIANPDLPLQQHTMTPALHVRESS 329 >ref|YP_002873707.1| putative ribose operon repressor [Pseudomonas fluorescens SBW25] emb|CAY50659.1| putative ribose operon repressor [Pseudomonas fluorescens SBW25] Length = 340 Score = 340 bits (871), Expect = 2e-91, Method: Composition-based stats. Identities = 181/336 (53%), Positives = 232/336 (69%), Gaps = 7/336 (2%) Query: 1 MATIKDVARLAGVSYTTVSHVLNQTRPVSSDARERVLAAVKELDYVPSALARSLRSKVTG 60 MATIKDVA LAG+SYTTVSHV+N+TRPVS R +V AA+K+LDYVPSA+ARSL++K T Sbjct: 1 MATIKDVAALAGISYTTVSHVVNKTRPVSEPVRIKVEAAIKQLDYVPSAVARSLKAKTTA 60 Query: 61 SIGLIIPNNTNPYFSELARGIEDHCYGAGYSVILCNSDDDPDKQRDYLQVLQTKRCDGLI 120 +IGL++PN+ NPYF+ELARGIED+C GY VILCNSDD+ +KQR YL+VL KR DGLI Sbjct: 61 TIGLLVPNSLNPYFAELARGIEDYCERNGYCVILCNSDDNAEKQRSYLRVLLEKRIDGLI 120 Query: 121 IATLNQADLNPAGRLD---IPTVLLDRAPKELDIDLVSTDNALGGSLAARHLLDLQRRHV 177 + ++ D A L P V++DRA +D+DLV D+ G LA RHLL+L R + Sbjct: 121 VTSVGGDDSGLAAGLSAVRTPMVIVDRALDGIDVDLVRIDHEEGAYLATRHLLELGHRDI 180 Query: 178 ACIAGPDGLELSDERVQGFRQTLQAGGLALADGDLLHADFSGIGGYQAAMQLLQGRAQGA 237 ACI GP ++ R+ G+ + LQ G+A+A +DF+ GGY AA+QLL Sbjct: 181 ACIGGPAHTRVAQMRLAGYHRALQEAGVAVAANRTQESDFTSTGGYTAAVQLLANNP--- 237 Query: 238 RPDAIFCCNDMMAIGVLRAAGELQIEVPGELSVVGFDDIELAQFVHPPLTTVAQNTRKLG 297 P AIF NDM+ GVLRAA E I VPGELSV+GFDDI++ ++V+P LTTV Q+ +LG Sbjct: 238 -PSAIFASNDMIGFGVLRAAAERNIRVPGELSVIGFDDIQMGRYVYPALTTVGQSIVQLG 296 Query: 298 NLTAQFLLERIADPGLPARRETVAPQLQLRGSTAPL 333 A+ LL RIA P LP + V P + LR STAP+ Sbjct: 297 ETAAELLLRRIATPQLPIDQRIVTPSIVLRESTAPV 332 >gb|ADR60820.1| RbsR [Pseudomonas putida BIRD-1] Length = 340 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 184/335 (54%), Positives = 233/335 (69%), Gaps = 7/335 (2%) Query: 1 MATIKDVARLAGVSYTTVSHVLNQTRPVSSDARERVLAAVKELDYVPSALARSLRSKVTG 60 MATIKDVA LAG+SYTTVSHVLN+TRPVS R +V AA+ ELDYVPSA+ARSL+++ T Sbjct: 1 MATIKDVAALAGISYTTVSHVLNKTRPVSEQVRLKVEAAIIELDYVPSAVARSLKARSTA 60 Query: 61 SIGLIIPNNTNPYFSELARGIEDHCYGAGYSVILCNSDDDPDKQRDYLQVLQTKRCDGLI 120 +IGL++PN+ NPYF+ELARGIED C GY VILCNSDD+P KQR YL+VL KR DGL+ Sbjct: 61 TIGLLVPNSVNPYFAELARGIEDACERNGYCVILCNSDDNPQKQRSYLRVLLEKRIDGLV 120 Query: 121 IATLNQAD--LNPAGRLDIPTVLLDRAPKELDIDLVSTDNALGGSLAARHLLDLQRRHVA 178 +A++ Q D L + P V++DR + +D DLV D+ G LA RHLL+L R VA Sbjct: 121 VASVGQDDDLLQSLASVRTPMVIVDRELEGVDADLVRIDHEQGAYLATRHLLELGHRDVA 180 Query: 179 CIAGPDGLELSDERVQGFRQTLQAGGLALADGDLLHADFSGIGGYQAAMQLLQGRAQGAR 238 I GP ++ R+ GFR+ + G + +LH DF+ GG+ AA Q+L+G+ R Sbjct: 181 YIGGPAETGVTQLRLSGFRRAMAEAGAPVPGSRVLHCDFTSPGGHAAAAQVLEGK----R 236 Query: 239 PDAIFCCNDMMAIGVLRAAGELQIEVPGELSVVGFDDIELAQFVHPPLTTVAQNTRKLGN 298 P AIF NDM+ GVLRAA E I VPGELSV+GFDDIEL+++V+PPLTTV Q+ R+LG Sbjct: 237 PSAIFAGNDMIGFGVLRAAAERNISVPGELSVIGFDDIELSRYVYPPLTTVGQSIRELGE 296 Query: 299 LTAQFLLERIADPGL-PARRETVAPQLQLRGSTAP 332 A LL RIA P A + VAP++ LR ST P Sbjct: 297 SAASLLLTRIATPRQGAAEQRIVAPRIVLRESTGP 331