BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1697.p (328 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775702.1| sugar ABC transporter permease [Herbaspirill... 521 e-146 ref|YP_004754745.1| ribose ABC transport system, permease RbsC [... 440 e-121 ref|ZP_08273307.1| Ribose ABC transport system, permease protein... 387 e-105 ref|YP_003605254.1| sugar ABC transporter ATPase [Burkholderia s... 378 e-103 ref|ZP_03269688.1| Monosaccharide-transporting ATPase [Burkholde... 371 e-101 >ref|YP_003775702.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ63794.1| ABC-type sugar transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 328 Score = 521 bits (1341), Expect = e-146, Method: Composition-based stats. Identities = 326/328 (99%), Positives = 328/328 (100%) Query: 1 MQTSSSTPAASRQAAYLAGFKNYLGLIAALLAMCVMFAFLSENFLSAATFITLSNDIPPL 60 MQTSSSTPAASRQAAYLAGFKNYLGL+AALLAMCVMFAFLSENFLSAATFITLSNDIPPL Sbjct: 1 MQTSSSTPAASRQAAYLAGFKNYLGLMAALLAMCVMFAFLSENFLSAATFITLSNDIPPL 60 Query: 61 VVMSVGMTFILIIGGIDLSVGSVMALAASMLSMAMVRWGWPLYAAAPLGVVVAALCGTLT 120 VVMSVGMTFILIIGGIDLSVGSVMALAASMLSMAMVRWGWPLYAAAPLGVVVAALCGTLT Sbjct: 61 VVMSVGMTFILIIGGIDLSVGSVMALAASMLSMAMVRWGWPLYAAAPLGVVVAALCGTLT 120 Query: 121 GMVSVHWRIPSFIVSLGVLEIARGLAYQVTNSRTEYIGSAVDLISSPILFGMSPAFLSAI 180 GMVSVHWRIPSFIVSLGVLEIARGLAYQVTNSRTEYIGSAVD+ISSPILFGMSPAFLSAI Sbjct: 121 GMVSVHWRIPSFIVSLGVLEIARGLAYQVTNSRTEYIGSAVDVISSPILFGMSPAFLSAI 180 Query: 181 AIVIIAQLVLTRTVLGRYWIGIGTNEEAVRLSGVNPNPSKILAFALMGALAGIAALFQVS 240 AIVIIAQLVLTRTVLGRYWIGIGTNEEAVRLSGVNPNPSKILAFALMGALAGIAALFQVS Sbjct: 181 AIVIIAQLVLTRTVLGRYWIGIGTNEEAVRLSGVNPNPSKILAFALMGALAGIAALFQVS 240 Query: 241 RLEAADPNGGVGMELQVIAAVVIGGTSLMGGRGSIVSTFIGVLIISVLEAGLAQVGVSEP 300 RLEAADPNGGVGMELQVIAAVVIGGTSLMGGRGSIVSTFIGVLIISVLEAGLAQVGVSEP Sbjct: 241 RLEAADPNGGVGMELQVIAAVVIGGTSLMGGRGSIVSTFIGVLIISVLEAGLAQVGVSEP 300 Query: 301 MKRIITGAVIVVAVILDTYRRRGQRHAR 328 MKRIITGAVIVVAVILDTYRRRGQRHAR Sbjct: 301 MKRIITGAVIVVAVILDTYRRRGQRHAR 328 >ref|YP_004754745.1| ribose ABC transport system, permease RbsC [Collimonas fungivorans Ter331] gb|AEK63922.1| Ribose ABC transport system, permease protein RbsC [Collimonas fungivorans Ter331] Length = 321 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 266/309 (86%), Positives = 291/309 (94%) Query: 17 LAGFKNYLGLIAALLAMCVMFAFLSENFLSAATFITLSNDIPPLVVMSVGMTFILIIGGI 76 ++G KNYLGLI ALLAMC++F+ LSENFL+AATF TLSNDIP LVVM+VGMTF+LIIGGI Sbjct: 10 MSGLKNYLGLIGALLAMCILFSILSENFLTAATFTTLSNDIPTLVVMAVGMTFVLIIGGI 69 Query: 77 DLSVGSVMALAASMLSMAMVRWGWPLYAAAPLGVVVAALCGTLTGMVSVHWRIPSFIVSL 136 DLSVGSVMALAAS+LSMAMVRWGWPL+AAA LGV+VA+LCG LTG++SV WRIPSFIVSL Sbjct: 70 DLSVGSVMALAASVLSMAMVRWGWPLFAAATLGVLVASLCGMLTGLISVGWRIPSFIVSL 129 Query: 137 GVLEIARGLAYQVTNSRTEYIGSAVDLISSPILFGMSPAFLSAIAIVIIAQLVLTRTVLG 196 GVLE+ARGLAYQVTNSRTEYIGSAVD ISSPILFGMSPAFLSAI IV++ LVLT+TVLG Sbjct: 130 GVLEMARGLAYQVTNSRTEYIGSAVDGISSPILFGMSPAFLSAILIVVVGHLVLTKTVLG 189 Query: 197 RYWIGIGTNEEAVRLSGVNPNPSKILAFALMGALAGIAALFQVSRLEAADPNGGVGMELQ 256 R+WIGIGTNEEAVRLSG+NP PSK+L FALMG LAG+ ALFQVSRLEAADPNGGVGMELQ Sbjct: 190 RHWIGIGTNEEAVRLSGINPRPSKVLVFALMGLLAGVGALFQVSRLEAADPNGGVGMELQ 249 Query: 257 VIAAVVIGGTSLMGGRGSIVSTFIGVLIISVLEAGLAQVGVSEPMKRIITGAVIVVAVIL 316 VIAAVVIGGTSLMGGRGS+VSTFIGVLIISVLEAGLAQVGVSEPMKRIITG VIV AV+L Sbjct: 250 VIAAVVIGGTSLMGGRGSVVSTFIGVLIISVLEAGLAQVGVSEPMKRIITGLVIVAAVVL 309 Query: 317 DTYRRRGQR 325 DTYRRRG+R Sbjct: 310 DTYRRRGER 318 >ref|ZP_08273307.1| Ribose ABC transport system, permease protein RbsC [Oxalobacteraceae bacterium IMCC9480] gb|EGF33234.1| Ribose ABC transport system, permease protein RbsC [Oxalobacteraceae bacterium IMCC9480] Length = 319 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 232/309 (75%), Positives = 273/309 (88%) Query: 17 LAGFKNYLGLIAALLAMCVMFAFLSENFLSAATFITLSNDIPPLVVMSVGMTFILIIGGI 76 LAG KNY GL+ L+A+CV+F+FLS+ F + T TL+ND+P L+VM+VGMTF+LIIGGI Sbjct: 10 LAGLKNYAGLLGTLVALCVLFSFLSDYFFTLNTLRTLANDVPTLLVMAVGMTFVLIIGGI 69 Query: 77 DLSVGSVMALAASMLSMAMVRWGWPLYAAAPLGVVVAALCGTLTGMVSVHWRIPSFIVSL 136 DLSVGSVMALAAS++S+AMV WGWP+YAA LG++ AA G +TG++SV WR+PSFIVSL Sbjct: 70 DLSVGSVMALAASIMSLAMVHWGWPVYAAGMLGMLAAASLGMVTGLISVGWRVPSFIVSL 129 Query: 137 GVLEIARGLAYQVTNSRTEYIGSAVDLISSPILFGMSPAFLSAIAIVIIAQLVLTRTVLG 196 G+LEIARG+AY+VTNSRTEYIG V IS+P+ GMSPAF++AI IVI QLVLTRTVLG Sbjct: 130 GMLEIARGMAYEVTNSRTEYIGGIVAGISAPVFMGMSPAFMAAILIVIAGQLVLTRTVLG 189 Query: 197 RYWIGIGTNEEAVRLSGVNPNPSKILAFALMGALAGIAALFQVSRLEAADPNGGVGMELQ 256 R WIGIGTNEEAVRLSG++P PSK+L FALMG LAG+ ALFQ+SRLEAADPNGGVG+ELQ Sbjct: 190 RLWIGIGTNEEAVRLSGIDPRPSKVLVFALMGLLAGVGALFQISRLEAADPNGGVGLELQ 249 Query: 257 VIAAVVIGGTSLMGGRGSIVSTFIGVLIISVLEAGLAQVGVSEPMKRIITGAVIVVAVIL 316 VIAAVVIGGTSLMGGRGS++STFIGVLII VLEAGLAQ+GVSEP+KRI+TG VIV AV+L Sbjct: 250 VIAAVVIGGTSLMGGRGSVISTFIGVLIIVVLEAGLAQIGVSEPLKRIVTGLVIVTAVVL 309 Query: 317 DTYRRRGQR 325 DTYRRRGQR Sbjct: 310 DTYRRRGQR 318 >ref|YP_003605254.1| sugar ABC transporter ATPase [Burkholderia sp. CCGE1002] gb|ADG15743.1| inner-membrane translocator [Burkholderia sp. CCGE1002] Length = 359 Score = 378 bits (970), Expect = e-103, Method: Composition-based stats. Identities = 227/321 (70%), Positives = 269/321 (83%) Query: 5 SSTPAASRQAAYLAGFKNYLGLIAALLAMCVMFAFLSENFLSAATFITLSNDIPPLVVMS 64 S+ A+ + A GF NYLGL ALLAM V+F+ LS +FL+ TF T++N IP LVVMS Sbjct: 38 SAPLASGKPAGTRLGFSNYLGLAGALLAMIVLFSLLSSHFLTYDTFSTIANQIPDLVVMS 97 Query: 65 VGMTFILIIGGIDLSVGSVMALAASMLSMAMVRWGWPLYAAAPLGVVVAALCGTLTGMVS 124 VGMTF+LII GIDLSVGSV+AL AS++S+ ++WGW A A LGV VAAL GT+TG V+ Sbjct: 98 VGMTFVLIIAGIDLSVGSVLALGASVVSVVTLKWGWGPAAGALLGVAVAALTGTVTGAVT 157 Query: 125 VHWRIPSFIVSLGVLEIARGLAYQVTNSRTEYIGSAVDLISSPILFGMSPAFLSAIAIVI 184 V WRIPSFIVSLGVLE ARGLAYQ+TNSRT YIG A D +S+PI G+SPAFL A+A+++ Sbjct: 158 VGWRIPSFIVSLGVLEAARGLAYQMTNSRTAYIGDAFDFLSNPIALGISPAFLVAVAVMV 217 Query: 185 IAQLVLTRTVLGRYWIGIGTNEEAVRLSGVNPNPSKILAFALMGALAGIAALFQVSRLEA 244 IAQLVLTRTV GRY +GIGTNEEAVRL+GVNP P K++ FA+MGAL+G+AALFQ+SRLEA Sbjct: 218 IAQLVLTRTVFGRYLVGIGTNEEAVRLAGVNPRPYKVIVFAVMGALSGLAALFQISRLEA 277 Query: 245 ADPNGGVGMELQVIAAVVIGGTSLMGGRGSIVSTFIGVLIISVLEAGLAQVGVSEPMKRI 304 ADPN GVG+ELQVIAAVVIGGTSLMGGRGS++STF GVLIISVL AGLAQ+G +EP KR+ Sbjct: 278 ADPNAGVGLELQVIAAVVIGGTSLMGGRGSVISTFFGVLIISVLAAGLAQIGANEPTKRM 337 Query: 305 ITGAVIVVAVILDTYRRRGQR 325 ITGAVIVVAV+LDTYR R +R Sbjct: 338 ITGAVIVVAVVLDTYRSRRKR 358 >ref|ZP_03269688.1| Monosaccharide-transporting ATPase [Burkholderia sp. H160] gb|EDZ98747.1| Monosaccharide-transporting ATPase [Burkholderia sp. H160] Length = 345 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 228/321 (71%), Positives = 269/321 (83%) Query: 5 SSTPAASRQAAYLAGFKNYLGLIAALLAMCVMFAFLSENFLSAATFITLSNDIPPLVVMS 64 S+ A+ + A GF NYLGL ALLAM V+F+ LS +FL+ TF T++N IP LVVMS Sbjct: 24 SAPLASGKPAGTRLGFSNYLGLAGALLAMIVLFSLLSSHFLTYDTFSTIANQIPDLVVMS 83 Query: 65 VGMTFILIIGGIDLSVGSVMALAASMLSMAMVRWGWPLYAAAPLGVVVAALCGTLTGMVS 124 VGMTF+LII GIDLSVGSV+AL AS++S+ ++WGW A A LGV VAAL GT+TG V+ Sbjct: 84 VGMTFVLIIAGIDLSVGSVLALGASVVSVVTLKWGWGPAAGALLGVAVAALTGTVTGAVT 143 Query: 125 VHWRIPSFIVSLGVLEIARGLAYQVTNSRTEYIGSAVDLISSPILFGMSPAFLSAIAIVI 184 V WRIPSFIVSLGVLE ARGLAYQ+TNSRT YIG A D +S+PI G+SPAFL A+A+++ Sbjct: 144 VGWRIPSFIVSLGVLEAARGLAYQMTNSRTAYIGDAFDFLSNPIALGISPAFLIAVAVMV 203 Query: 185 IAQLVLTRTVLGRYWIGIGTNEEAVRLSGVNPNPSKILAFALMGALAGIAALFQVSRLEA 244 IAQLVLTRTV GRY +GIGTNEEAVRL+GVNP P K++ FALMGAL+G+AALFQ+SRLEA Sbjct: 204 IAQLVLTRTVFGRYLVGIGTNEEAVRLAGVNPRPYKVIVFALMGALSGLAALFQISRLEA 263 Query: 245 ADPNGGVGMELQVIAAVVIGGTSLMGGRGSIVSTFIGVLIISVLEAGLAQVGVSEPMKRI 304 ADPN GVG+ELQVIAAVVIGGTSLMGGRGS++STF GVLIISVL AGLAQ+G +EP KR+ Sbjct: 264 ADPNAGVGVELQVIAAVVIGGTSLMGGRGSVISTFFGVLIISVLAAGLAQIGANEPTKRM 323 Query: 305 ITGAVIVVAVILDTYRRRGQR 325 ITGAVIVVAV+LDTYR R +R Sbjct: 324 ITGAVIVVAVVLDTYRSRRKR 344