BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1696.p (522 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775701.1| sugar ABC transporter ATPase [Herbaspirillum... 951 0.0 ref|YP_004754746.1| ribose ABC transport system, ATP-binding pro... 732 0.0 ref|ZP_08273308.1| Ribose ABC transport system, ATP-binding prot... 676 0.0 ref|YP_607594.1| ribose ABC transporter ATP-binding protein RbsA... 612 e-173 ref|ZP_08142526.1| ABC transporter-like protein [Pseudomonas sp.... 608 e-172 >ref|YP_003775701.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] gb|ADJ63793.1| ABC-type sugar transport system, ATPase component protein [Herbaspirillum seropedicae SmR1] Length = 522 Score = 951 bits (2459), Expect = 0.0, Method: Composition-based stats. Identities = 509/522 (97%), Positives = 511/522 (97%) Query: 1 MQPNDSPSQASPLLTLSGIGKSYAAPVLDGIDLDLRPGQVLALTGENGAGKSTLSKIICG 60 MQPNDS SQ SPLLTLSGIGK YAAPVLDGIDLDLRPGQVLALTGENGAGKSTLSKIICG Sbjct: 1 MQPNDSLSQGSPLLTLSGIGKRYAAPVLDGIDLDLRPGQVLALTGENGAGKSTLSKIICG 60 Query: 61 LVDASAGGMTLDGQPYQPTSRTQAEGLGIRMVMQELNLIPTLSIAENLFLEKLPRRFGWI 120 LVDASAGGM LDGQPY P SRTQAEGLGIRMVMQELNLIPTLSIAENLFLEKLPRRFGWI Sbjct: 61 LVDASAGGMMLDGQPYAPASRTQAEGLGIRMVMQELNLIPTLSIAENLFLEKLPRRFGWI 120 Query: 121 DRKNLAEAARAQMEVVGLGELDPWTPVGDLGLGHQQMVEIARNLIGSCRCLILDEPTAML 180 DRK LAEAARAQMEVVGLGELDPWTPVGDLGLGHQQMVEIARNLIGSCRCLILDEPTAML Sbjct: 121 DRKKLAEAARAQMEVVGLGELDPWTPVGDLGLGHQQMVEIARNLIGSCRCLILDEPTAML 180 Query: 181 TNREVELLFSRIERLRAEGVAIIYISHRLEELKRIADRIVVLRDGKLVCNDDIGRYSTEQ 240 TNREVELLFSRIERLRAEGVAIIYISHRLEELKRIADRIVVLRDGKLVCNDDIGRYSTEQ Sbjct: 181 TNREVELLFSRIERLRAEGVAIIYISHRLEELKRIADRIVVLRDGKLVCNDDIGRYSTEQ 240 Query: 241 LVQLMAGELTKVDLDAEHRHIGAPVLRIRSLGRAPVVQPASLALHAGEVLGIAGLIGSGR 300 LVQLMAGELTKVDLDAEHR IGAPVLRIR LGRAPVV PASLALHAGEVLGIAGLIGSGR Sbjct: 241 LVQLMAGELTKVDLDAEHRRIGAPVLRIRGLGRAPVVHPASLALHAGEVLGIAGLIGSGR 300 Query: 301 TELLRLIFGADRADQGEIFIGDSQQPARIRSPKDAVKAGIAMVTEDRKGQGLLLPQAISV 360 TELLRLIFGADRA+QGEIFIGDSQ+PARIRSPKDAVKAGIAMVTEDRKGQGLLLPQAISV Sbjct: 301 TELLRLIFGADRAEQGEIFIGDSQEPARIRSPKDAVKAGIAMVTEDRKGQGLLLPQAISV 360 Query: 361 NTSLANLGSVSRAGMLDHAAESSVAQDYVKKLRIRSGSVAQAAGELSGGNQQKVVIARWL 420 NTSLANLGSVSR GMLDHAAESSVAQDYVKKLRIRSGSVAQAAGELSGGNQQKVVIARWL Sbjct: 361 NTSLANLGSVSRGGMLDHAAESSVAQDYVKKLRIRSGSVAQAAGELSGGNQQKVVIARWL 420 Query: 421 YRDCPIMLFDEPTRGIDIGAKSDIYRLFAELAAQGKGLLVVSSDLRELMQICDRIAVMSA 480 YRDCPIMLFDEPTRGIDIGAKSDIYRLFAELAAQGKGLLVVSSDLRELMQICDRIAVMSA Sbjct: 421 YRDCPIMLFDEPTRGIDIGAKSDIYRLFAELAAQGKGLLVVSSDLRELMQICDRIAVMSA 480 Query: 481 GRIADTFSRDDWSQERILAAAFSGYVGRQEAAAAAHVAGNTA 522 GRIADTFSRDDWSQERILAAAFSGYVGRQEAAAAAHVAGNTA Sbjct: 481 GRIADTFSRDDWSQERILAAAFSGYVGRQEAAAAAHVAGNTA 522 >ref|YP_004754746.1| ribose ABC transport system, ATP-binding protein RbsA [Collimonas fungivorans Ter331] gb|AEK63923.1| Ribose ABC transport system, ATP-binding protein RbsA [Collimonas fungivorans Ter331] Length = 533 Score = 732 bits (1890), Expect = 0.0, Method: Composition-based stats. Identities = 375/501 (74%), Positives = 429/501 (85%) Query: 6 SPSQASPLLTLSGIGKSYAAPVLDGIDLDLRPGQVLALTGENGAGKSTLSKIICGLVDAS 65 + + A PLL+LSGIGK+Y PVL + + + PGQ+LALTGENGAGKSTLSKI+CGLVDA+ Sbjct: 15 AAASAVPLLSLSGIGKTYVEPVLSDVTISISPGQILALTGENGAGKSTLSKIVCGLVDAT 74 Query: 66 AGGMTLDGQPYQPTSRTQAEGLGIRMVMQELNLIPTLSIAENLFLEKLPRRFGWIDRKNL 125 GGM LDGQPY+P SR +AE LGIRMVMQELNLIPTLSIAENL+ +LP RFGWID+ L Sbjct: 75 TGGMQLDGQPYRPGSRKEAEHLGIRMVMQELNLIPTLSIAENLYFNQLPHRFGWIDKARL 134 Query: 126 AEAARAQMEVVGLGELDPWTPVGDLGLGHQQMVEIARNLIGSCRCLILDEPTAMLTNREV 185 AE R QM VGL +LDPWTPVG+LG+GHQQMVEIARNLIGSCR L+LDEPTAMLTNREV Sbjct: 135 AEDTRIQMAAVGLTDLDPWTPVGELGVGHQQMVEIARNLIGSCRLLVLDEPTAMLTNREV 194 Query: 186 ELLFSRIERLRAEGVAIIYISHRLEELKRIADRIVVLRDGKLVCNDDIGRYSTEQLVQLM 245 ELLF++I RL++EGVAIIYISHRLEELKR+ADRI VLRDG+LVC+D IG YSTE LVQLM Sbjct: 195 ELLFTQIARLQSEGVAIIYISHRLEELKRVADRIAVLRDGQLVCDDAIGGYSTEALVQLM 254 Query: 246 AGELTKVDLDAEHRHIGAPVLRIRSLGRAPVVQPASLALHAGEVLGIAGLIGSGRTELLR 305 G + +LD HR IGAP+LR+R++GR VV P S L AGE+LG+AGLIGSGRTELLR Sbjct: 255 VGRAAEAELDLGHRTIGAPLLRVRNIGRGKVVAPTSFDLRAGEILGVAGLIGSGRTELLR 314 Query: 306 LIFGADRADQGEIFIGDSQQPARIRSPKDAVKAGIAMVTEDRKGQGLLLPQAISVNTSLA 365 LIFGADRADQGE+FIGD Q A+I SPKDA+ AGIAM+TEDRK QGLLLPQ+I +NT+LA Sbjct: 315 LIFGADRADQGEVFIGDQTQAAKISSPKDAIAAGIAMITEDRKSQGLLLPQSIGLNTTLA 374 Query: 366 NLGSVSRAGMLDHAAESSVAQDYVKKLRIRSGSVAQAAGELSGGNQQKVVIARWLYRDCP 425 L +VS+ G+LD AE++VA DY+K+LRIRS + QAAGELSGGNQQKVVIARWLYRDCP Sbjct: 375 KLSAVSKLGVLDQQAEAAVADDYIKRLRIRSRNGLQAAGELSGGNQQKVVIARWLYRDCP 434 Query: 426 IMLFDEPTRGIDIGAKSDIYRLFAELAAQGKGLLVVSSDLRELMQICDRIAVMSAGRIAD 485 IMLFDEPTRGIDIGAK DIY+L AEL+ QGKGLL+VSSDLRELM ICDRIAVMSAG++ D Sbjct: 435 IMLFDEPTRGIDIGAKFDIYKLLAELSRQGKGLLIVSSDLRELMLICDRIAVMSAGKLVD 494 Query: 486 TFSRDDWSQERILAAAFSGYV 506 TF R WSQE ILAAAFSGYV Sbjct: 495 TFERGQWSQETILAAAFSGYV 515 >ref|ZP_08273308.1| Ribose ABC transport system, ATP-binding protein RbsA [Oxalobacteraceae bacterium IMCC9480] gb|EGF33235.1| Ribose ABC transport system, ATP-binding protein RbsA [Oxalobacteraceae bacterium IMCC9480] Length = 516 Score = 676 bits (1744), Expect = 0.0, Method: Composition-based stats. Identities = 353/511 (69%), Positives = 416/511 (81%) Query: 5 DSPSQASPLLTLSGIGKSYAAPVLDGIDLDLRPGQVLALTGENGAGKSTLSKIICGLVDA 64 D + A+ LLTLSGIGK+Y VL + L L GQVLALTGENGAGKST+SKIICGL A Sbjct: 4 DLNANANALLTLSGIGKTYVQTVLQDVSLSLHAGQVLALTGENGAGKSTVSKIICGLEPA 63 Query: 65 SAGGMTLDGQPYQPTSRTQAEGLGIRMVMQELNLIPTLSIAENLFLEKLPRRFGWIDRKN 124 SAG M LDG+PYQP SR+ AE G+RMV+QELNLIPTLS+AENL+L +LP RFGWI+R+ Sbjct: 64 SAGSMLLDGRPYQPVSRSDAEAHGMRMVLQELNLIPTLSVAENLYLRQLPGRFGWINRRQ 123 Query: 125 LAEAARAQMEVVGLGELDPWTPVGDLGLGHQQMVEIARNLIGSCRCLILDEPTAMLTNRE 184 L + AR QM VGL +DPWT VG+LG+GHQQM+EIARNLIG CR LILDEPTAMLT+RE Sbjct: 124 LEQDARVQMARVGLTNIDPWTLVGELGIGHQQMIEIARNLIGDCRLLILDEPTAMLTHRE 183 Query: 185 VELLFSRIERLRAEGVAIIYISHRLEELKRIADRIVVLRDGKLVCNDDIGRYSTEQLVQL 244 VELLF +I RL++EGVA++YISHRLEELKR+ADRIVVLRDGKLVC+D I +S+ LV+L Sbjct: 184 VELLFIQIARLKSEGVALVYISHRLEELKRVADRIVVLRDGKLVCDDAIAGHSSADLVKL 243 Query: 245 MAGELTKVDLDAEHRHIGAPVLRIRSLGRAPVVQPASLALHAGEVLGIAGLIGSGRTELL 304 M G D+D R +GAPVLR+R LGR VV P+S A+H GE++GIAGLIGSGRTELL Sbjct: 244 MVGRAADADIDLGGRTLGAPVLRVRELGRQGVVAPSSFAVHGGEIVGIAGLIGSGRTELL 303 Query: 305 RLIFGADRADQGEIFIGDSQQPARIRSPKDAVKAGIAMVTEDRKGQGLLLPQAISVNTSL 364 RLIFGADRADQGE+F+GD+ ARIRSPKDAV AGIAMVTEDRKGQGLLL Q+I++NT+L Sbjct: 304 RLIFGADRADQGEVFVGDATVAARIRSPKDAVAAGIAMVTEDRKGQGLLLQQSIALNTTL 363 Query: 365 ANLGSVSRAGMLDHAAESSVAQDYVKKLRIRSGSVAQAAGELSGGNQQKVVIARWLYRDC 424 A+L +VSRAG LD AAE+ VA DY+++L I++ AQ ELSGGNQQKVV+ARW YRDC Sbjct: 364 ASLPAVSRAGWLDAAAEALVATDYMQRLGIKARDAAQPVAELSGGNQQKVVMARWFYRDC 423 Query: 425 PIMLFDEPTRGIDIGAKSDIYRLFAELAAQGKGLLVVSSDLRELMQICDRIAVMSAGRIA 484 P+MLFDEPTRGIDIGAK DIY+L LA +GKGL +VSSDLRELM +CDRI VMSAGR+ Sbjct: 424 PVMLFDEPTRGIDIGAKFDIYQLLVGLAREGKGLAIVSSDLRELMLVCDRILVMSAGRVV 483 Query: 485 DTFSRDDWSQERILAAAFSGYVGRQEAAAAA 515 +TF R WSQ+ +LAAAFSGY+ A A Sbjct: 484 ETFERATWSQDALLAAAFSGYLNTPATPATA 514 >ref|YP_607594.1| ribose ABC transporter ATP-binding protein RbsA [Pseudomonas entomophila L48] emb|CAK14788.1| putative ribose ABC transporter, ATP-binding protein RbsA [Pseudomonas entomophila L48] Length = 517 Score = 612 bits (1579), Expect = e-173, Method: Composition-based stats. Identities = 325/496 (65%), Positives = 390/496 (78%) Query: 13 LLTLSGIGKSYAAPVLDGIDLDLRPGQVLALTGENGAGKSTLSKIICGLVDASAGGMTLD 72 +L +SG+GK+YA PVL + L+LR G+VLALTGENGAGKSTLSK+I GL +AG MT Sbjct: 9 VLAVSGLGKTYAQPVLGDVTLELRGGEVLALTGENGAGKSTLSKLISGLEIPTAGQMTYR 68 Query: 73 GQPYQPTSRTQAEGLGIRMVMQELNLIPTLSIAENLFLEKLPRRFGWIDRKNLAEAARAQ 132 GQPY P SR +AE LG+RMVMQELNL+PTL++AENLFL+ LP R GW+++K L + A A Sbjct: 69 GQPYSPGSRAEAERLGVRMVMQELNLLPTLTVAENLFLDNLPSRLGWVNQKRLRQLATAA 128 Query: 133 MEVVGLGELDPWTPVGDLGLGHQQMVEIARNLIGSCRCLILDEPTAMLTNREVELLFSRI 192 M VGL +DP TPVG+LG+GHQQMVEIARNLIG C LI DEPTAMLT REVELLF++I Sbjct: 129 MAQVGLDAIDPDTPVGELGIGHQQMVEIARNLIGDCHVLIFDEPTAMLTAREVELLFTQI 188 Query: 193 ERLRAEGVAIIYISHRLEELKRIADRIVVLRDGKLVCNDDIGRYSTEQLVQLMAGELTKV 252 RLR GVAI+YISHRLEEL+R+A RI VLRDGKLVC + I RY++EQLV LM G Sbjct: 189 ARLRQRGVAIVYISHRLEELQRVAQRIAVLRDGKLVCAEPIQRYNSEQLVNLMVGRELGE 248 Query: 253 DLDAEHRHIGAPVLRIRSLGRAPVVQPASLALHAGEVLGIAGLIGSGRTELLRLIFGADR 312 +D R IGAP+L + L R+ V+ S + AGE+ GI+GLIG+GRTELLRLI+GADR Sbjct: 249 HIDLGQRTIGAPLLTVDKLSRSDKVREVSFEVRAGEIFGISGLIGAGRTELLRLIYGADR 308 Query: 313 ADQGEIFIGDSQQPARIRSPKDAVKAGIAMVTEDRKGQGLLLPQAISVNTSLANLGSVSR 372 AD G++ +G P I SPK AVKAGIA++TEDRKG+GLLL Q+IS N +L NLG+VSR Sbjct: 309 ADSGQVALGQPPVPVTIDSPKAAVKAGIALITEDRKGEGLLLTQSISANIALGNLGAVSR 368 Query: 373 AGMLDHAAESSVAQDYVKKLRIRSGSVAQAAGELSGGNQQKVVIARWLYRDCPIMLFDEP 432 AG+LD AE +A+ + +RIRS S AQA GELSGGNQQKVVI RWL RDC ++LFDEP Sbjct: 369 AGVLDRDAERELAERQIGAMRIRSASPAQAVGELSGGNQQKVVIGRWLERDCQVLLFDEP 428 Query: 433 TRGIDIGAKSDIYRLFAELAAQGKGLLVVSSDLRELMQICDRIAVMSAGRIADTFSRDDW 492 TRGID+GAK DIY L AELA QGK ++VVSSDLRELM ICDRIAV+SAGR+ DTF RD W Sbjct: 429 TRGIDVGAKFDIYGLLAELARQGKAIVVVSSDLRELMLICDRIAVLSAGRLIDTFDRDHW 488 Query: 493 SQERILAAAFSGYVGR 508 SQ+++LAAAF+GY R Sbjct: 489 SQDQLLAAAFAGYQKR 504 >ref|ZP_08142526.1| ABC transporter-like protein [Pseudomonas sp. TJI-51] gb|EGB96179.1| ABC transporter-like protein [Pseudomonas sp. TJI-51] Length = 517 Score = 608 bits (1568), Expect = e-172, Method: Composition-based stats. Identities = 319/496 (64%), Positives = 390/496 (78%) Query: 13 LLTLSGIGKSYAAPVLDGIDLDLRPGQVLALTGENGAGKSTLSKIICGLVDASAGGMTLD 72 +L SG+GK+YA PVL + L+LR G+VLALTGENGAGKSTLSK+I GL + G MT Sbjct: 9 VLAASGLGKTYAQPVLGEVSLNLRAGEVLALTGENGAGKSTLSKLISGLETPTTGHMTYR 68 Query: 73 GQPYQPTSRTQAEGLGIRMVMQELNLIPTLSIAENLFLEKLPRRFGWIDRKNLAEAARAQ 132 GQ Y P SR++AE LG+RMVMQELNL+PTL++AENLFL+ LP RFGWI+ K L + A A Sbjct: 69 GQAYAPASRSEAERLGVRMVMQELNLLPTLTVAENLFLDNLPSRFGWINHKRLRQLATAA 128 Query: 133 MEVVGLGELDPWTPVGDLGLGHQQMVEIARNLIGSCRCLILDEPTAMLTNREVELLFSRI 192 M VGL +DP TPVG+LG+GHQQMVEIARNLIG C LI DEPTAMLT REVELLF++I Sbjct: 129 MARVGLDAIDPDTPVGELGIGHQQMVEIARNLIGDCHVLIFDEPTAMLTAREVELLFTQI 188 Query: 193 ERLRAEGVAIIYISHRLEELKRIADRIVVLRDGKLVCNDDIGRYSTEQLVQLMAGELTKV 252 +RLRA GVAI+YISHRLEEL+R+A RIVVLRDG+ VC++ I RYS+ +LV LM G Sbjct: 189 DRLRARGVAIVYISHRLEELQRVAQRIVVLRDGRQVCDEPIQRYSSAELVNLMVGRELGE 248 Query: 253 DLDAEHRHIGAPVLRIRSLGRAPVVQPASLALHAGEVLGIAGLIGSGRTELLRLIFGADR 312 +D R +GAP+L++ L R+ V+ S + AGE+ GI+GLIG+GRTELLRLI+GADR Sbjct: 249 HIDLGRRQLGAPLLKVERLTRSDKVREVSFEVRAGEIFGISGLIGAGRTELLRLIYGADR 308 Query: 313 ADQGEIFIGDSQQPARIRSPKDAVKAGIAMVTEDRKGQGLLLPQAISVNTSLANLGSVSR 372 AD G I +G QP I SPK AV+AGIA++TEDRKG+GLLL Q+IS N +L NLG+VSR Sbjct: 309 ADSGSIALGQPPQPVTIDSPKAAVRAGIALITEDRKGEGLLLSQSISANIALGNLGAVSR 368 Query: 373 AGMLDHAAESSVAQDYVKKLRIRSGSVAQAAGELSGGNQQKVVIARWLYRDCPIMLFDEP 432 AG+LD AE ++A+ ++ +RIRS Q GELSGGNQQKVVI RWL R+C ++LFDEP Sbjct: 369 AGVLDGEAERALAERQIQAMRIRSAGAHQVVGELSGGNQQKVVIGRWLERNCQVLLFDEP 428 Query: 433 TRGIDIGAKSDIYRLFAELAAQGKGLLVVSSDLRELMQICDRIAVMSAGRIADTFSRDDW 492 TRGID+GAK DIY L AELA QGK L+VVSSDLRELM ICDRIAV+SAGR+ DTF R+ W Sbjct: 429 TRGIDVGAKFDIYGLLAELARQGKALVVVSSDLRELMLICDRIAVLSAGRLIDTFDREHW 488 Query: 493 SQERILAAAFSGYVGR 508 +Q+++LAAAF+GY R Sbjct: 489 TQDQLLAAAFAGYQKR 504