BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1695.p (314 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775700.1| sugar ABC transporter periplasmic protein [H... 532 e-149 ref|YP_004754747.1| ribose ABC transport system, periplasmic rib... 436 e-120 ref|ZP_03269686.1| periplasmic binding protein/LacI transcriptio... 398 e-109 ref|ZP_04945721.1| ABC-type sugar transport system periplasmic c... 395 e-108 gb|EGD03505.1| simple sugar transporter substrate-binding protei... 394 e-107 >ref|YP_003775700.1| sugar ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ63792.1| ABC-type sugar transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 314 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 312/314 (99%), Positives = 314/314 (100%) Query: 1 MNKFTRRHFAIAALACAVLPGAAMAQTPAKPKVALVMKSLANEFFLNMENGAREYQKANA 60 MNKFTRRHFAIAALACAVLPGAAMAQTPAKPKVALVMKSLANEFFLNMENGAREYQKANA Sbjct: 1 MNKFTRRHFAIAALACAVLPGAAMAQTPAKPKVALVMKSLANEFFLNMENGAREYQKANA 60 Query: 61 SKFDLIANGIKDEQDTANQIKIVEQMIVSKVNALVIAPADSKALVPVVKKAIDAGIIVVN 120 SKFDLIANGIKDEQDTANQIKIVEQMIVSKVNALVIAPADSKALVPVVKKAIDAGIIVVN Sbjct: 61 SKFDLIANGIKDEQDTANQIKIVEQMIVSKVNALVIAPADSKALVPVVKKAIDAGIIVVN 120 Query: 121 IDNKLDDAALKEKGITVPFVGPDNRKGAKLAGDYLGKQLQKGDKVAIIEGVSTTFNAQQR 180 IDNKLDDAALKEKGITVPFVGPDNRKGAKLAGDYLGKQLQKGDKVAIIEGVSTTFNAQQR Sbjct: 121 IDNKLDDAALKEKGITVPFVGPDNRKGAKLAGDYLGKQLQKGDKVAIIEGVSTTFNAQQR 180 Query: 181 TLGFQDAMKDVGANVVTVQSGQWEIDQGNKVAASILNAHPDIKAILAGNDNMALGAVAAI 240 TLGFQDAMKDVGANVVTVQSGQWEIDQGNKVAASILNAHPDIKAILAGNDNMALGAVAAI Sbjct: 181 TLGFQDAMKDVGANVVTVQSGQWEIDQGNKVAASILNAHPDIKAILAGNDNMALGAVAAI 240 Query: 241 RAAGKTGKVQLVGYDNINAIKPMLKDGRVLATVDQFAQQQAVFGIETALKAVTEKKPQSA 300 RAAGKTGKVQLVGYDNINAIKPMLKDGRVLATVDQFAQQQAVFGIETALKA++EKKPQSA Sbjct: 241 RAAGKTGKVQLVGYDNINAIKPMLKDGRVLATVDQFAQQQAVFGIETALKALSEKKPQSA 300 Query: 301 LGGVVETKVSLVTK 314 LGGVVETKVSLVTK Sbjct: 301 LGGVVETKVSLVTK 314 >ref|YP_004754747.1| ribose ABC transport system, periplasmic ribose-binding protein RbsB [Collimonas fungivorans Ter331] gb|AEK63924.1| Ribose ABC transport system, periplasmic ribose-binding protein RbsB [Collimonas fungivorans Ter331] Length = 367 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 252/305 (82%), Positives = 276/305 (90%) Query: 10 AIAALACAVLPGAAMAQTPAKPKVALVMKSLANEFFLNMENGAREYQKANASKFDLIANG 69 A L CA+ AMAQT AKPKVALVMKSLANEFFL MENGA+E+QKA+A+++DLIANG Sbjct: 60 AATILVCALPSLPAMAQTAAKPKVALVMKSLANEFFLTMENGAKEHQKAHAAQYDLIANG 119 Query: 70 IKDEQDTANQIKIVEQMIVSKVNALVIAPADSKALVPVVKKAIDAGIIVVNIDNKLDDAA 129 IKDE DT+NQIKIVEQMIVSKVN LVIAPADSKALVPV+KKAIDAGIIVVNIDNKLDDAA Sbjct: 120 IKDETDTSNQIKIVEQMIVSKVNGLVIAPADSKALVPVIKKAIDAGIIVVNIDNKLDDAA 179 Query: 130 LKEKGITVPFVGPDNRKGAKLAGDYLGKQLQKGDKVAIIEGVSTTFNAQQRTLGFQDAMK 189 LKEKGITVPFVGPDNR GAKL GDYL KQ++ GDKV IIEGVSTTFNAQQRTLGFQDAMK Sbjct: 180 LKEKGITVPFVGPDNRLGAKLVGDYLAKQIKTGDKVGIIEGVSTTFNAQQRTLGFQDAMK 239 Query: 190 DVGANVVTVQSGQWEIDQGNKVAASILNAHPDIKAILAGNDNMALGAVAAIRAAGKTGKV 249 GANVV VQSGQWE+ GN++AA++LNAHPDIKA+LAGNDNMALGAVAA++AAGKTGKV Sbjct: 240 TAGANVVAVQSGQWEMAPGNQIAAAMLNAHPDIKALLAGNDNMALGAVAAVKAAGKTGKV 299 Query: 250 QLVGYDNINAIKPMLKDGRVLATVDQFAQQQAVFGIETALKAVTEKKPQSALGGVVETKV 309 +VGYDNINAIKPMLKDGRVLAT DQFA QQAVFGIET LKA+T+KK Q+ LGG VETKV Sbjct: 300 LVVGYDNINAIKPMLKDGRVLATADQFASQQAVFGIETVLKAITDKKAQNTLGGTVETKV 359 Query: 310 SLVTK 314 +LVTK Sbjct: 360 ALVTK 364 >ref|ZP_03269686.1| periplasmic binding protein/LacI transcriptional regulator [Burkholderia sp. H160] gb|EDZ98745.1| periplasmic binding protein/LacI transcriptional regulator [Burkholderia sp. H160] Length = 323 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 232/319 (72%), Positives = 268/319 (84%), Gaps = 5/319 (1%) Query: 1 MNKFTRRHFAIAAL---ACAVLP-GAAMAQT-PAKPKVALVMKSLANEFFLNMENGAREY 55 M+ TRR AA+ A AVLP AA AQ P KPKVALVMKSLANEFFL ME GA++Y Sbjct: 1 MSHRTRRRLLAAAVLVTASAVLPFSAAYAQNAPHKPKVALVMKSLANEFFLTMETGAKDY 60 Query: 56 QKANASKFDLIANGIKDEQDTANQIKIVEQMIVSKVNALVIAPADSKALVPVVKKAIDAG 115 QK N KFDLI NGIKDE DTANQI+IVEQMIVSKV+A+V+APADSKALVPVVKKA+DAG Sbjct: 61 QKHNPDKFDLITNGIKDETDTANQIRIVEQMIVSKVDAIVLAPADSKALVPVVKKAVDAG 120 Query: 116 IIVVNIDNKLDDAALKEKGITVPFVGPDNRKGAKLAGDYLGKQLQKGDKVAIIEGVSTTF 175 IIVVNIDN+LD LK K + VPFVGPDNRKGA++ GDYL K + GD+V I+EGVSTT Sbjct: 121 IIVVNIDNRLDQDVLKSKDLNVPFVGPDNRKGARMVGDYLAKSQKAGDEVGILEGVSTTT 180 Query: 176 NAQQRTLGFQDAMKDVGANVVTVQSGQWEIDQGNKVAASILNAHPDIKAILAGNDNMALG 235 NAQQRT GF+DAM+ VGA VV+VQSG+WEID+GN VA+++LN +P++KA+LAGNDNMA+G Sbjct: 181 NAQQRTAGFKDAMQTVGAKVVSVQSGEWEIDKGNAVASAMLNEYPNLKALLAGNDNMAIG 240 Query: 236 AVAAIRAAGKTGKVQLVGYDNINAIKPMLKDGRVLATVDQFAQQQAVFGIETALKAVTEK 295 AV+A+RAAGK GKV +VGYDNINAI PMLKDGRVLAT DQFA +QAVFGI+TALKA++EK Sbjct: 241 AVSAVRAAGKQGKVMVVGYDNINAIHPMLKDGRVLATADQFAAKQAVFGIDTALKALSEK 300 Query: 296 KPQSALGGVVETKVSLVTK 314 K QS L GVVET V LVTK Sbjct: 301 KKQSELSGVVETPVVLVTK 319 >ref|ZP_04945721.1| ABC-type sugar transport system periplasmic component [Burkholderia dolosa AUO158] gb|EAY68892.1| ABC-type sugar transport system periplasmic component [Burkholderia dolosa AUO158] Length = 316 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 225/314 (71%), Positives = 260/314 (82%) Query: 1 MNKFTRRHFAIAALACAVLPGAAMAQTPAKPKVALVMKSLANEFFLNMENGAREYQKANA 60 MN RR F AALA A +KPKVALVMKSLANEFFL MENGA+EYQK NA Sbjct: 3 MNVLFRRRFLTAALAAVAFVAAPAVHAQSKPKVALVMKSLANEFFLTMENGAKEYQKHNA 62 Query: 61 SKFDLIANGIKDEQDTANQIKIVEQMIVSKVNALVIAPADSKALVPVVKKAIDAGIIVVN 120 +FDLI NGIKDE DTANQI+IVEQMIVSKV+A+V+APADSKALVPVVKKA+DAGIIVVN Sbjct: 63 GQFDLITNGIKDETDTANQIRIVEQMIVSKVDAIVLAPADSKALVPVVKKAVDAGIIVVN 122 Query: 121 IDNKLDDAALKEKGITVPFVGPDNRKGAKLAGDYLGKQLQKGDKVAIIEGVSTTFNAQQR 180 IDN+LD LK K + VPFVGPDNRKGA+ GDYL K+L+ GD+V IIEGVSTT NAQQR Sbjct: 123 IDNRLDPDVLKSKNLNVPFVGPDNRKGARKVGDYLAKKLKAGDQVGIIEGVSTTTNAQQR 182 Query: 181 TLGFQDAMKDVGANVVTVQSGQWEIDQGNKVAASILNAHPDIKAILAGNDNMALGAVAAI 240 T GF+DAMK G VV+VQSG+WEID+GN VA+++LN +P++KA+L GNDNMA+GAV+A+ Sbjct: 183 TAGFEDAMKAGGMKVVSVQSGEWEIDKGNAVASAMLNEYPNLKALLCGNDNMAIGAVSAV 242 Query: 241 RAAGKTGKVQLVGYDNINAIKPMLKDGRVLATVDQFAQQQAVFGIETALKAVTEKKPQSA 300 RAAGK GKV +VGYDNINAIKPMLKDGRVLAT DQ+A +QAVFGI+TALKA+ E + Q+ Sbjct: 243 RAAGKQGKVYVVGYDNINAIKPMLKDGRVLATADQYAAKQAVFGIDTALKAIAEHRKQAD 302 Query: 301 LGGVVETKVSLVTK 314 L GVVET V LVTK Sbjct: 303 LSGVVETPVDLVTK 316 >gb|EGD03505.1| simple sugar transporter substrate-binding protein [Burkholderia sp. TJI49] Length = 316 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 217/289 (75%), Positives = 251/289 (86%) Query: 26 QTPAKPKVALVMKSLANEFFLNMENGAREYQKANASKFDLIANGIKDEQDTANQIKIVEQ 85 +T KPKVALVMKSLANEFFL MENGA+EYQK NAS+FDLI NGIKDE DTANQI+IVEQ Sbjct: 28 ETAGKPKVALVMKSLANEFFLTMENGAKEYQKHNASQFDLITNGIKDETDTANQIRIVEQ 87 Query: 86 MIVSKVNALVIAPADSKALVPVVKKAIDAGIIVVNIDNKLDDAALKEKGITVPFVGPDNR 145 MIVSKV+A+V+APADSKALVPVVKKAIDAGI VVNIDN+LD LK K + VPFVGPDNR Sbjct: 88 MIVSKVDAIVLAPADSKALVPVVKKAIDAGITVVNIDNRLDPEVLKSKNLNVPFVGPDNR 147 Query: 146 KGAKLAGDYLGKQLQKGDKVAIIEGVSTTFNAQQRTLGFQDAMKDVGANVVTVQSGQWEI 205 KGA+ GDYL K+L+ GD+V I+EGVSTT NAQQRT GFQDAMK G VV+VQSG+WEI Sbjct: 148 KGARKVGDYLAKRLKAGDEVGIVEGVSTTTNAQQRTAGFQDAMKAGGMKVVSVQSGEWEI 207 Query: 206 DQGNKVAASILNAHPDIKAILAGNDNMALGAVAAIRAAGKTGKVQLVGYDNINAIKPMLK 265 D+GN VAA++LN +P++KA+L GNDNMA+GAV+A+RAAGK GKV +VGYDNINAIKPMLK Sbjct: 208 DKGNAVAAAMLNEYPNLKALLCGNDNMAIGAVSAVRAAGKQGKVYVVGYDNINAIKPMLK 267 Query: 266 DGRVLATVDQFAQQQAVFGIETALKAVTEKKPQSALGGVVETKVSLVTK 314 DGRVLAT DQ+A +QAVFGI+TALKA+ E + Q+ + GVVET V LVTK Sbjct: 268 DGRVLATADQYAAKQAVFGIDTALKAIAEHRKQADMSGVVETPVDLVTK 316