BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1692.p         (172 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775697.1| universal stress protein [Herbaspirillum ser...   231   3e-59
ref|YP_001100591.1| universal stress family protein [Herminiimon...   124   6e-27
ref|YP_001352123.1| universal stress protein (Usp) [Janthinobact...   111   3e-23
ref|YP_004751364.1| Universal stress protein [Collimonas fungivo...   111   4e-23
ref|YP_003775807.1| universal stress protein [Herbaspirillum ser...   110   1e-22

>ref|YP_003775697.1| universal stress protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63789.1| universal stress protein [Herbaspirillum seropedicae SmR1]
          Length = 145

 Score =  231 bits (589), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 132/145 (91%), Positives = 138/145 (95%)

Query: 28  MFKNILLATDGSRLCNESVKAAIALAKSCGSTLVGLSVAGNLRALSIPEVSVGVDVERTD 87
           MFKNILLATDGSRLCNESVKAAIALAKSCGS+LVGLSV+GNLRALSIPEVSVGVDV R  
Sbjct: 1   MFKNILLATDGSRLCNESVKAAIALAKSCGSSLVGLSVSGNLRALSIPEVSVGVDVARAG 60

Query: 88  EAGRERALASVEMITAMAREEGVPCTVQVAQGGRPYEEIMRVAEREHCDAIIMASKARST 147
           EAGR RALASVEMIT MAR+EGVPC+VQVAQGGRPYEEIMRVAEREHCDAI MASKARST
Sbjct: 61  EAGRARALASVEMITEMARQEGVPCSVQVAQGGRPYEEIMRVAEREHCDAIFMASKARST 120

Query: 148 LGRLLLGSQTQKLLAHSKVPVLVYR 172
           LGRLL+GSQTQKLLA SKVPVLV+R
Sbjct: 121 LGRLLMGSQTQKLLARSKVPVLVFR 145


>ref|YP_001100591.1| universal stress family protein [Herminiimonas arsenicoxydans]
 emb|CAL62469.1| putative universel stress protein UspA-like [Herminiimonas
           arsenicoxydans]
          Length = 140

 Score =  124 bits (310), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 67/145 (46%), Positives = 91/145 (62%), Gaps = 5/145 (3%)

Query: 28  MFKNILLATDGSRLCNESVKAAIALAKSCGSTLVGLSVAGNLRALSIPEVSVGVDVERTD 87
           M K ILLATDGS L  ++V AAI  A S GS +VGLSVA        PE+ +  D+   +
Sbjct: 1   MLKTILLATDGSDLSKKAVTAAIDFAASYGSKIVGLSVAE-----VFPELFLDYDLRAIE 55

Query: 88  EAGRERALASVEMITAMAREEGVPCTVQVAQGGRPYEEIMRVAEREHCDAIIMASKARST 147
           E  ++RA++    +   A++ GV C V    G  PY+EI++ A   HCDAI MAS  +  
Sbjct: 56  EDMQKRAVSDANFVEECAKKAGVACEVHTVTGVHPYQEIIKAANDFHCDAIFMASHGKKG 115

Query: 148 LGRLLLGSQTQKLLAHSKVPVLVYR 172
           + ++LLGS+TQK+LAHS +PVLVYR
Sbjct: 116 IDKILLGSETQKVLAHSTIPVLVYR 140


>ref|YP_001352123.1| universal stress protein (Usp) [Janthinobacterium sp. Marseille]
 gb|ABR90388.1| universal stress protein (Usp) [Janthinobacterium sp. Marseille]
          Length = 147

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 67/148 (45%), Positives = 91/148 (61%), Gaps = 4/148 (2%)

Query: 28  MFKNILLATDGSRLCNESVKAAIALAKSCGSTLVGLSVAGNLRALSIPEVSVGV---DVE 84
           MFK IL+ TDGS L +++V AAI  A+  GS L+ LSVA     + + E   GV   D  
Sbjct: 1   MFKKILIPTDGSPLSDKAVDAAIEFAQKMGSELLVLSVAEPYVYMGLME-GAGVFPTDPV 59

Query: 85  RTDEAGRERALASVEMITAMAREEGVPCTVQVAQGGRPYEEIMRVAEREHCDAIIMASKA 144
             D+  +E A   ++ + A  R++GV C   V+ G  PYEEI+RVAE + CD I MAS  
Sbjct: 60  MYDDKVKELAQKHLDKVEAATRDKGVSCKTVVSVGLSPYEEIVRVAEEQKCDVIFMASHG 119

Query: 145 RSTLGRLLLGSQTQKLLAHSKVPVLVYR 172
           R  L +L +GS+TQK+LAH+ +PVLV R
Sbjct: 120 RKGLNKLFIGSETQKVLAHTSLPVLVLR 147


>ref|YP_004751364.1| Universal stress protein [Collimonas fungivorans Ter331]
 gb|AEK60541.1| Universal stress protein [Collimonas fungivorans Ter331]
          Length = 158

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 64/145 (44%), Positives = 85/145 (58%)

Query: 28  MFKNILLATDGSRLCNESVKAAIALAKSCGSTLVGLSVAGNLRALSIPEVSVGVDVERTD 87
           MFK IL+ TDGS L ++++  AI  AK     ++ LSVA       + E ++  D    +
Sbjct: 14  MFKTILVPTDGSHLSDKAINTAIEFAKFSSGRIIALSVAEPYPFSPMAESTMATDPGTYE 73

Query: 88  EAGRERALASVEMITAMAREEGVPCTVQVAQGGRPYEEIMRVAEREHCDAIIMASKARST 147
           E     A  +V+ +   AR  GVPC +  AQ   P EEI+  AE+ HCDAI MAS  RS 
Sbjct: 74  ENMLALAKLNVQKVADAARNAGVPCEMLTAQAFNPDEEIISAAEKYHCDAIFMASHGRSG 133

Query: 148 LGRLLLGSQTQKLLAHSKVPVLVYR 172
           L RL LGS+TQ++LAHS +PVLV R
Sbjct: 134 LSRLFLGSKTQRVLAHSTIPVLVLR 158


>ref|YP_003775807.1| universal stress protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ63899.1| universal stress protein [Herbaspirillum seropedicae SmR1]
          Length = 157

 Score =  110 bits (274), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 61/145 (42%), Positives = 90/145 (62%), Gaps = 1/145 (0%)

Query: 28  MFKNILLATDGSRLCNESVKAAIALAKSCGSTLVGLSVAGNLRALSIPEVSVGVDVERTD 87
           +FK IL+ TDGS     +V+AA+  AK  GS+LVGLSVA ++   ++ +    ++  + +
Sbjct: 14  IFKKILVPTDGSDASERAVQAAVQFAKESGSSLVGLSVAEDIVQWAVID-GTAINYLQVE 72

Query: 88  EAGRERALASVEMITAMAREEGVPCTVQVAQGGRPYEEIMRVAEREHCDAIIMASKARST 147
               E A ++V  + A+A+   VPC     +   PYEEI+  A  +HCDAI MAS  R  
Sbjct: 73  NEILENAKSNVARLAALAKSADVPCETFTVKAVHPYEEILAHASHQHCDAIFMASHGRKG 132

Query: 148 LGRLLLGSQTQKLLAHSKVPVLVYR 172
           L R +LGSQTQK+LA++ +PVLV+R
Sbjct: 133 LERFILGSQTQKVLANATIPVLVFR 157