BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1685.p (251 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775693.1| glutamine ABC transporter periplasmic protei... 436 e-120 ref|ZP_08871580.1| ABC transporter periplasmic subunit [Verminep... 290 1e-76 ref|ZP_04761969.1| extracellular solute-binding protein family 3... 290 1e-76 ref|YP_004348345.1| extracellular solute-binding protein family ... 288 4e-76 ref|YP_997767.1| extracellular solute-binding protein [Vermineph... 286 2e-75 >ref|YP_003775693.1| glutamine ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ63785.1| ABC-type glutamine transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 251 Score = 436 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 221/251 (88%), Positives = 231/251 (92%) Query: 1 MMKLSRLLCAVSASLFLLVAAAPAARAADNVIRVGTDATFPPMEFVKDGKRTGFDIELME 60 M S+LLCA ASL LL+AA PAA A VIRVGTDATFPPMEFVKDGKRTGFD+EL+E Sbjct: 1 MKTFSKLLCAGMASLSLLIAAVPAAHANGEVIRVGTDATFPPMEFVKDGKRTGFDVELIE 60 Query: 61 ALAKTMGKKIQWIDIDFKGLIPGLISNRFDIAASAIYMTDERRKVVTFSDPYYRGGLAVL 120 ALAKTMGKK+QWIDIDFKGLIPGL+SNRFDIAASAIYMTDERRKVV FSDPYYRGGLAVL Sbjct: 61 ALAKTMGKKVQWIDIDFKGLIPGLVSNRFDIAASAIYMTDERRKVVNFSDPYYRGGLAVL 120 Query: 121 VRRDDNSIKVPEDLNKGKRVSVQVGTKSVSYLRDNFPGVERVEVEKNQAMFDLLATGRVN 180 VRRDDNSIKVPEDLNKGKRVSVQVGTKSV YL+DNFPGVERVEVEKNQAMFDLLATGRVN Sbjct: 121 VRRDDNSIKVPEDLNKGKRVSVQVGTKSVGYLKDNFPGVERVEVEKNQAMFDLLATGRVN 180 Query: 181 AVVTGRPAAVEYARTQPLVRVLDKGLTTELYGFALRKNDTALVEHLNKALQTLRMNGTYD 240 AVVTGRPAAVEYARTQPLVRVLDKGLTTELYGFALRK+DT L LNKALQTLRMNGTY Sbjct: 181 AVVTGRPAAVEYARTQPLVRVLDKGLTTELYGFALRKSDTELTAQLNKALQTLRMNGTYT 240 Query: 241 ALTDKWFARKD 251 ALTDKWF + + Sbjct: 241 ALTDKWFGKSE 251 >ref|ZP_08871580.1| ABC transporter periplasmic subunit [Verminephrobacter sp. At4] Length = 250 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 148/235 (62%), Positives = 179/235 (76%), Gaps = 1/235 (0%) Query: 14 SLFLLVAAAPAARAADNVIRVGTDATFPPMEFVKDGKRTGFDIELMEALAKTMGKKIQWI 73 SL LV P A+A D+ +RVGTDATF PMEFV +GKRTGFDIEL+EA+AK MG++++W+ Sbjct: 11 SLAALVLCGPGAQAQDSPLRVGTDATFAPMEFVDNGKRTGFDIELVEAVAKNMGRRLEWV 70 Query: 74 DIDFKGLIPGLISNRFDIAASAIYMTDERRKVVTFSDPYYRGGLAVLVRRDDNSIKVPED 133 DIDFKGLIPGL+S RFD+A SAIY+TDERRKVV FS PYY GGL VLVR + +IK P D Sbjct: 71 DIDFKGLIPGLLSKRFDMAVSAIYITDERRKVVDFSAPYYTGGLVVLVREGNTAIKKPAD 130 Query: 134 LNKGKRVSVQVGTKSVSYLRDNFPGVERVEVEKNQAMFDLLATGRVNAVVTGRPAAVEYA 193 L+ GK+VSVQVGTKSV +L PGV+RVEVEKNQ MF+L+ GR +A VTG+PAA Y Sbjct: 131 LD-GKKVSVQVGTKSVGFLTQQHPGVQRVEVEKNQEMFNLVDIGRADAAVTGKPAAFHYV 189 Query: 194 RTQPLVRVLDKGLTTELYGFALRKNDTALVEHLNKALQTLRMNGTYDALTDKWFA 248 RT+ +RVLD LTTE YG ALRK+ L + +N AL LR +GTY + KWF Sbjct: 190 RTRSGLRVLDAPLTTEEYGMALRKDTPELTQAVNAALANLRADGTYAEIVKKWFG 244 >ref|ZP_04761969.1| extracellular solute-binding protein family 3 [Acidovorax delafieldii 2AN] gb|EER61253.1| extracellular solute-binding protein family 3 [Acidovorax delafieldii 2AN] Length = 249 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 144/223 (64%), Positives = 182/223 (81%), Gaps = 1/223 (0%) Query: 26 RAADNVIRVGTDATFPPMEFVKDGKRTGFDIELMEALAKTMGKKIQWIDIDFKGLIPGLI 85 +A DNV+RVGTDATFPPMEFV++GKRTGFDIEL+EA+AKTMGK+++W+DIDFKGLIPGLI Sbjct: 23 QAQDNVLRVGTDATFPPMEFVENGKRTGFDIELVEAIAKTMGKQVEWVDIDFKGLIPGLI 82 Query: 86 SNRFDIAASAIYMTDERRKVVTFSDPYYRGGLAVLVRRDDNSIKVPEDLNKGKRVSVQVG 145 S RFD+A SAIY+TDER+KVV F+D YY GGL V+V+ D+ +I DL+ GK+VSVQVG Sbjct: 83 SKRFDMAVSAIYITDERKKVVDFTDSYYAGGLVVMVKADNKAINKLADLD-GKKVSVQVG 141 Query: 146 TKSVSYLRDNFPGVERVEVEKNQAMFDLLATGRVNAVVTGRPAAVEYARTQPLVRVLDKG 205 TKSV+YL + FP V+RVEVEKNQ MF+L+ GR +A VTG+PAA +Y RT+P +RVLD+ Sbjct: 142 TKSVAYLTEKFPKVQRVEVEKNQEMFNLVDIGRADAAVTGKPAAFQYVRTRPGLRVLDEQ 201 Query: 206 LTTELYGFALRKNDTALVEHLNKALQTLRMNGTYDALTDKWFA 248 LTTE YG ALRK+ L + N A+ L+ +GTY A+ KWF+ Sbjct: 202 LTTEEYGMALRKDTPELTKAFNGAINKLKADGTYAAIVKKWFS 244 >ref|YP_004348345.1| extracellular solute-binding protein family 3 [Burkholderia gladioli BSR3] gb|AEA62833.1| extracellular solute-binding protein family 3 [Burkholderia gladioli BSR3] Length = 257 Score = 288 bits (738), Expect = 4e-76, Method: Composition-based stats. Identities = 149/249 (59%), Positives = 189/249 (75%), Gaps = 4/249 (1%) Query: 2 MKLSRLLCAVSASLFLLVAAAP--AARAADNVIRVGTDATFPPMEFVKDGKRTGFDIELM 59 MKL LLC S + LL A AP A+ A +V+ V TDATFPPMEFV G+RTGFDI++M Sbjct: 1 MKLKALLCVASLGMTLLTAIAPGTASAQASSVLNVATDATFPPMEFVDKGQRTGFDIDIM 60 Query: 60 EALAKTMGKKIQWIDIDFKGLIPGLISNRFDIAASAIYMTDERRKVVTFSDPYYRGGLAV 119 ALAK MGK++QW DIDFKGL+PGL++ RFD A S IY+T ER +VV F+ Y+ GGL+V Sbjct: 61 NALAKAMGKQVQWTDIDFKGLVPGLVARRFDAAISGIYITPERAQVVDFTQSYFAGGLSV 120 Query: 120 LVRRDDNSIKVPEDLNKGKRVSVQVGTKSVSYLRDNFPGVERVEVEKNQAMFDLLATGRV 179 LV+ D + IK DLN GK+VSVQVGTKSV++LRDN+P V+RVEVEKNQ MFDL+ GR Sbjct: 121 LVKAD-SPIKTLADLN-GKKVSVQVGTKSVNFLRDNYPQVQRVEVEKNQEMFDLVGIGRA 178 Query: 180 NAVVTGRPAAVEYARTQPLVRVLDKGLTTELYGFALRKNDTALVEHLNKALQTLRMNGTY 239 +A VTG+PAA ++ART+P RVLDK LTTE YG A+RK+++ L + +N AL ++ +GTY Sbjct: 179 DAAVTGKPAAYQFARTRPGFRVLDKELTTEAYGIAVRKDESQLRDQMNAALAKIKADGTY 238 Query: 240 DALTDKWFA 248 DA+ KWF Sbjct: 239 DAIVKKWFG 247 >ref|YP_997767.1| extracellular solute-binding protein [Verminephrobacter eiseniae EF01-2] gb|ABM58749.1| extracellular solute-binding protein, family 3 [Verminephrobacter eiseniae EF01-2] Length = 246 Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats. Identities = 142/244 (58%), Positives = 186/244 (76%), Gaps = 5/244 (2%) Query: 7 LLCAVSASLFLLVAAAPAARAADNVIRVGTDATFPPMEFVKDGKRTGFDIELMEALAKTM 66 LL A S L +A+A +VIRV TDATFPP EF K+GKRTGFDIEL+E LAK M Sbjct: 8 LLAAFSFGLLPALASAQTV----SVIRVATDATFPPFEFFKNGKRTGFDIELIELLAKNM 63 Query: 67 GKKIQWIDIDFKGLIPGLISNRFDIAASAIYMTDERRKVVTFSDPYYRGGLAVLVRRDDN 126 GKK++W DIDFKGLIPGL+S RFD+A+SAIY+T+ERR+VV F+DPYY GGL VL + + Sbjct: 64 GKKVEWTDIDFKGLIPGLVSRRFDVASSAIYITEERRRVVDFTDPYYPGGLVVLTKASNT 123 Query: 127 SIKVPEDLNKGKRVSVQVGTKSVSYLRDNFPGVERVEVEKNQAMFDLLATGRVNAVVTGR 186 +I+ P DL GK+VSVQVGTKS +YL+ +P ER+EVEKNQ MF+L+ GR +A VTG+ Sbjct: 124 AIRQPSDL-AGKKVSVQVGTKSANYLKAYYPQTERIEVEKNQEMFNLVEIGRADAAVTGK 182 Query: 187 PAAVEYARTQPLVRVLDKGLTTELYGFALRKNDTALVEHLNKALQTLRMNGTYDALTDKW 246 PAA+EYA+T+P ++VLDK ++ ELYG+A+RK+ L E +N AL+ +++G+YD L KW Sbjct: 183 PAAIEYAKTRPGMKVLDKQVSVELYGYAVRKDLPQLTEEMNAALKKAKLDGSYDKLVHKW 242 Query: 247 FARK 250 + K Sbjct: 243 LSSK 246