BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1684.p (245 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775692.1| transcription regulator protein [Herbaspiril... 457 e-127 ref|YP_001900355.1| IclR family transcriptional regulator [Ralst... 220 2e-55 ref|ZP_07676168.1| transcriptional regulator, IclR family [Ralst... 220 2e-55 ref|YP_002982337.1| IclR family transcriptional regulator [Ralst... 217 1e-54 ref|ZP_06687503.1| IclR family transcriptional regulator [Achrom... 209 2e-52 >ref|YP_003775692.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63784.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 292 Score = 457 bits (1175), Expect = e-127, Method: Composition-based stats. Identities = 235/245 (95%), Positives = 239/245 (97%) Query: 1 MDSPQTSTIVDRVLHVLAGVARAGKPVSAKQIAAMVQQPVSTVYRHLASLKKWGLLQEHM 60 MDSPQTSTIVDRVLHVLAGVARAGKPVSAKQIAAMVQQPVSTVYRHLASLKKWGLLQEHM Sbjct: 48 MDSPQTSTIVDRVLHVLAGVARAGKPVSAKQIAAMVQQPVSTVYRHLASLKKWGLLQEHM 107 Query: 61 NSGTFEPGPTGVQLAWGFDQNSNLISQSREEIISLVQRSGESVGLLVPINGQMVCIAMEE 120 NSGTFEPGPTGVQLAWGFDQNSNL+SQSREEI SLVQRSGESVGLLV INGQMVCIAMEE Sbjct: 108 NSGTFEPGPTGVQLAWGFDQNSNLVSQSREEISSLVQRSGESVGLLVAINGQMVCIAMEE 167 Query: 121 SDQPLRCSFTKGRAHPLLKGASAKSLLAFMPRKLQQKLVADQLGDKPEEAAALEAQLDEI 180 SDQPLRCSFTKGRAHPLLKGASAKSLLAFMPRKLQQKL+ DQLGDKPEE AALE QL+EI Sbjct: 168 SDQPLRCSFTKGRAHPLLKGASAKSLLAFMPRKLQQKLLTDQLGDKPEELAALETQLEEI 227 Query: 181 RRRGYSISESEVDLGVWGVSVPIMTSNGRLEGTITLMAPALRVGNREQELVRMTVESAQR 240 RRRGY ISESEVDLGVWGVSVPIMTSNGRLEGTITLMAPALRVGNREQELVRMT+ESAQR Sbjct: 228 RRRGYCISESEVDLGVWGVSVPIMTSNGRLEGTITLMAPALRVGNREQELVRMTLESAQR 287 Query: 241 ICNRF 245 ICNRF Sbjct: 288 ICNRF 292 >ref|YP_001900355.1| IclR family transcriptional regulator [Ralstonia pickettii 12J] gb|ACD27923.1| transcriptional regulator, IclR family [Ralstonia pickettii 12J] Length = 256 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 122/235 (51%), Positives = 160/235 (68%), Gaps = 2/235 (0%) Query: 11 DRVLHVLAGVARAGKPVSAKQIAAMVQQPVSTVYRHLASLKKWGLLQEHMNSGTFEPGPT 70 DRVL VLA +AR G+PV+A+++ + P ST+YR +A LK+WG + E ++GT+ PGP Sbjct: 21 DRVLMVLATIARHGRPVAARELVELTGLPQSTLYRQVAMLKRWGFVLE--SAGTYAPGPI 78 Query: 71 GVQLAWGFDQNSNLISQSREEIISLVQRSGESVGLLVPINGQMVCIAMEESDQPLRCSFT 130 +QLA GFD S+L+ ++R + LV SGESVGL+V + Q VC+ M ES Q LRCSF Sbjct: 79 SLQLALGFDHASHLVQEARIGMAKLVVESGESVGLVVAVKDQAVCLEMVESQQSLRCSFE 138 Query: 131 KGRAHPLLKGASAKSLLAFMPRKLQQKLVADQLGDKPEEAAALEAQLDEIRRRGYSISES 190 KGR PLL GASAKSLLAFMP + ++AD L + A L+A+L++IR GY++SE Sbjct: 139 KGRGVPLLAGASAKSLLAFMPPAAARAILADLLAVDADTQAQLQAELNDIRAAGYALSEG 198 Query: 191 EVDLGVWGVSVPIMTSNGRLEGTITLMAPALRVGNREQELVRMTVESAQRICNRF 245 EVD GVWGVSVP+ G G+ITLMAPA RV +EQ L+ MTV +A I R Sbjct: 199 EVDPGVWGVSVPVFRLPGHALGSITLMAPATRVRGKEQRLIDMTVAAAASISARL 253 >ref|ZP_07676168.1| transcriptional regulator, IclR family [Ralstonia sp. 5_7_47FAA] gb|EFP65506.1| transcriptional regulator, IclR family [Ralstonia sp. 5_7_47FAA] Length = 256 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 122/235 (51%), Positives = 159/235 (67%), Gaps = 2/235 (0%) Query: 11 DRVLHVLAGVARAGKPVSAKQIAAMVQQPVSTVYRHLASLKKWGLLQEHMNSGTFEPGPT 70 DRVL VLA +AR G+PV+A+++ + P ST+YR +A LK+WG + E ++GT+ PGP Sbjct: 21 DRVLMVLATIARHGRPVAARELVELTGLPQSTLYRQVAMLKRWGFVLE--SAGTYAPGPI 78 Query: 71 GVQLAWGFDQNSNLISQSREEIISLVQRSGESVGLLVPINGQMVCIAMEESDQPLRCSFT 130 +QLA GFD S+L+ ++R + LV SGESVGL+V + Q VC+ M ES Q LRCSF Sbjct: 79 SLQLALGFDHASHLVQEARIGMAKLVAESGESVGLVVAVKDQAVCLEMVESQQSLRCSFE 138 Query: 131 KGRAHPLLKGASAKSLLAFMPRKLQQKLVADQLGDKPEEAAALEAQLDEIRRRGYSISES 190 KGR PLL GASAKSLLAFMP + ++AD L + A L+A+L +IR GY++SE Sbjct: 139 KGRGVPLLAGASAKSLLAFMPPAAARAILADLLAIDADTQAQLQAELSDIRAAGYALSEG 198 Query: 191 EVDLGVWGVSVPIMTSNGRLEGTITLMAPALRVGNREQELVRMTVESAQRICNRF 245 EVD GVWGVSVP+ G G+ITLMAPA RV +EQ L+ MTV +A I R Sbjct: 199 EVDPGVWGVSVPVFRLPGHALGSITLMAPATRVRGKEQRLIDMTVAAAASISARL 253 >ref|YP_002982337.1| IclR family transcriptional regulator [Ralstonia pickettii 12D] gb|ACS63665.1| transcriptional regulator, IclR family [Ralstonia pickettii 12D] Length = 256 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 121/235 (51%), Positives = 158/235 (67%), Gaps = 2/235 (0%) Query: 11 DRVLHVLAGVARAGKPVSAKQIAAMVQQPVSTVYRHLASLKKWGLLQEHMNSGTFEPGPT 70 DRVL VLA +AR G+PV+A+++ + P ST+YR +A LK+WG + E ++GT+ PGP Sbjct: 21 DRVLMVLATIARHGRPVAARELVELTGLPQSTLYRQVAMLKRWGFVLE--SAGTYAPGPI 78 Query: 71 GVQLAWGFDQNSNLISQSREEIISLVQRSGESVGLLVPINGQMVCIAMEESDQPLRCSFT 130 +QLA GFD S+L+ ++R + L SGESVGL+V + Q VC+ M ES Q LRCSF Sbjct: 79 SLQLALGFDHASHLVQEARIGMAKLEVESGESVGLVVAVKDQAVCLEMVESQQSLRCSFE 138 Query: 131 KGRAHPLLKGASAKSLLAFMPRKLQQKLVADQLGDKPEEAAALEAQLDEIRRRGYSISES 190 KGR PLL GASAKSLLAFMP + ++AD L + A L+A+L +IR GY++SE Sbjct: 139 KGRGVPLLAGASAKSLLAFMPPAAARAILADLLAIDADTQAQLQAELSDIRAAGYALSEG 198 Query: 191 EVDLGVWGVSVPIMTSNGRLEGTITLMAPALRVGNREQELVRMTVESAQRICNRF 245 EVD GVWGVSVP+ G G+ITLMAPA RV +EQ L+ MTV +A I R Sbjct: 199 EVDPGVWGVSVPVFRLPGHALGSITLMAPATRVRGKEQRLIDMTVAAAASISARL 253 >ref|ZP_06687503.1| IclR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gb|EFF75603.1| IclR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 246 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 115/245 (46%), Positives = 154/245 (62%), Gaps = 2/245 (0%) Query: 1 MDSPQTSTIVDRVLHVLAGVARAGKPVSAKQIAAMVQQPVSTVYRHLASLKKWGLLQEHM 60 M P DRVL+VLA +AR P++ +A ST+YR +A LK+WG + EH Sbjct: 1 MSEPSVGAGADRVLYVLATLARHDGPLTIAALAEKTGLAQSTLYRQVALLKRWGFVAEH- 59 Query: 61 NSGTFEPGPTGVQLAWGFDQNSNLISQSREEIISLVQRSGESVGLLVPINGQMVCIAMEE 120 G + PGP VQLAWGFDQ+S LI +++ ++ +L SGE++GLLV + Q VC+ M E Sbjct: 60 -EGEYGPGPLCVQLAWGFDQSSFLIHEAQPDMAALAAASGETIGLLVAVKDQAVCLDMVE 118 Query: 121 SDQPLRCSFTKGRAHPLLKGASAKSLLAFMPRKLQQKLVADQLGDKPEEAAALEAQLDEI 180 S PLRCSFTKGR PL +GASAKSLLAFMP Q +A + +A L +L+ I Sbjct: 119 SQHPLRCSFTKGRGLPLARGASAKSLLAFMPLGRLQAALAYLADEAGVDAGRLTDELERI 178 Query: 181 RRRGYSISESEVDLGVWGVSVPIMTSNGRLEGTITLMAPALRVGNREQELVRMTVESAQR 240 R +GY++++SEVD GVWGVSVPI + +ITLMAP+ R + L+ MTV +A+R Sbjct: 179 REQGYAVTDSEVDAGVWGVSVPIFQRPNQAVASITLMAPSTRAAQQPDALIAMTVAAARR 238 Query: 241 ICNRF 245 I R Sbjct: 239 ISERL 243