BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1683.p (240 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775691.1| transcription regulator protein [Herbaspiril... 403 e-110 gb|AAT50453.1| PA0797 [synthetic construct] 343 1e-92 ref|NP_249488.1| transcriptional regulator [Pseudomonas aerugino... 342 3e-92 ref|YP_001350063.1| transcriptional regulator [Pseudomonas aerug... 340 8e-92 ref|YP_001748647.1| GntR family transcriptional regulator [Pseud... 337 1e-90 >ref|YP_003775691.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63783.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 243 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 224/240 (93%), Positives = 232/240 (96%) Query: 1 MSELIALPGAERDGETLSEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAI 60 MSELI+LPG +R+GETLSEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAI Sbjct: 1 MSELISLPGNDREGETLSEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAI 60 Query: 61 HRLEGQNLLVRVPHVGARVVSLTLEGLVELFQIRESLEGMACRLAAQRMSRAELDELRRV 120 HRLEGQNLLVRVPHVGARVVSLTLEGLVELFQIRESLEGMACRLAAQRMSRAELDELRRV Sbjct: 61 HRLEGQNLLVRVPHVGARVVSLTLEGLVELFQIRESLEGMACRLAAQRMSRAELDELRRV 120 Query: 121 LETHEKDEAFQAGRGYYQQEGDYDFHYKIIQASGNQILTRILCGELYQLARMYRIQYSAA 180 L+THEKDEAFQAGRGYYQQEGDYDFHYKIIQASGNQILTRILCGELYQLARMYRIQYSA Sbjct: 121 LDTHEKDEAFQAGRGYYQQEGDYDFHYKIIQASGNQILTRILCGELYQLARMYRIQYSAT 180 Query: 181 PNRPRQAFAEHHRILDALADGDGELADLLMRRHIGASRRNIEHQIAQTGPGSSGQQRDQA 240 P+RPRQAFAEHHRILDALADGDGELADLLMRRHIGASRRNIEHQIAQ G +G++ QA Sbjct: 181 PHRPRQAFAEHHRILDALADGDGELADLLMRRHIGASRRNIEHQIAQAQAGGAGKRAGQA 240 >gb|AAT50453.1| PA0797 [synthetic construct] Length = 241 Score = 343 bits (880), Expect = 1e-92, Method: Composition-based stats. Identities = 186/216 (86%), Positives = 200/216 (92%) Query: 10 AERDGETLSEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQNLL 69 A DGETLSEHVFRKIQSAIV GEIAPGSKISEPELARTYGISRGPLREAIHRLEG LL Sbjct: 11 AHDDGETLSEHVFRKIQSAIVSGEIAPGSKISEPELARTYGISRGPLREAIHRLEGLRLL 70 Query: 70 VRVPHVGARVVSLTLEGLVELFQIRESLEGMACRLAAQRMSRAELDELRRVLETHEKDEA 129 VRVPHVGARVVSL+ L+EL++IRESLEGMACRLAA+RMS+AE+DELRRVL+THE+DEA Sbjct: 71 VRVPHVGARVVSLSHAELIELYEIRESLEGMACRLAAERMSQAEIDELRRVLDTHERDEA 130 Query: 130 FQAGRGYYQQEGDYDFHYKIIQASGNQILTRILCGELYQLARMYRIQYSAAPNRPRQAFA 189 FQAGRGYYQQEGDYDFHY+IIQ SGN LTR+LCGELYQLARMYRIQYS PNRPRQAFA Sbjct: 131 FQAGRGYYQQEGDYDFHYRIIQGSGNATLTRMLCGELYQLARMYRIQYSTTPNRPRQAFA 190 Query: 190 EHHRILDALADGDGELADLLMRRHIGASRRNIEHQI 225 EHHRILDA+AD DGELA+LLMRRHI ASRRNIE Q+ Sbjct: 191 EHHRILDAIADRDGELAELLMRRHISASRRNIERQL 226 >ref|NP_249488.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] ref|ZP_01364177.1| hypothetical protein PaerPA_01001283 [Pseudomonas aeruginosa PACS2] ref|YP_792485.1| transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] ref|YP_002442128.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] ref|ZP_04932478.1| hypothetical protein PACG_05343 [Pseudomonas aeruginosa C3719] ref|ZP_04938372.1| hypothetical protein PA2G_05935 [Pseudomonas aeruginosa 2192] ref|ZP_06880326.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] ref|ZP_07791888.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gb|AAG04186.1|AE004515_2 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gb|ABJ09951.1| probable transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gb|EAZ56597.1| hypothetical protein PACG_05343 [Pseudomonas aeruginosa C3719] gb|EAZ62491.1| hypothetical protein PA2G_05935 [Pseudomonas aeruginosa 2192] emb|CAW29299.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] gb|EFQ36984.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gb|EGM17234.1| putative transcriptional regulator [Pseudomonas aeruginosa 138244] gb|EGM21032.1| putative transcriptional regulator [Pseudomonas aeruginosa 152504] dbj|GAA16172.1| probable transcriptional regulator [Pseudomonas aeruginosa NCMG1179] dbj|BAK88391.1| transcriptional regulator [Pseudomonas aeruginosa NCGM2.S1] Length = 240 Score = 342 bits (877), Expect = 3e-92, Method: Composition-based stats. Identities = 185/216 (85%), Positives = 199/216 (92%) Query: 10 AERDGETLSEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQNLL 69 A DGETLSEHVFRKIQSAIV GEIAPGSKISEPELARTYGISRGPLREAIHRLEG LL Sbjct: 11 AHDDGETLSEHVFRKIQSAIVSGEIAPGSKISEPELARTYGISRGPLREAIHRLEGLRLL 70 Query: 70 VRVPHVGARVVSLTLEGLVELFQIRESLEGMACRLAAQRMSRAELDELRRVLETHEKDEA 129 VRVPHVGARVVSL+ L+EL++IRESLEGMACRLAA+RMS+AE+DELRRVL+THE+DEA Sbjct: 71 VRVPHVGARVVSLSHAELIELYEIRESLEGMACRLAAERMSQAEIDELRRVLDTHERDEA 130 Query: 130 FQAGRGYYQQEGDYDFHYKIIQASGNQILTRILCGELYQLARMYRIQYSAAPNRPRQAFA 189 FQAGRGYYQQEGDYDFHY+IIQ SGN LTR+LCGELYQL RMYRIQYS PNRPRQAFA Sbjct: 131 FQAGRGYYQQEGDYDFHYRIIQGSGNATLTRMLCGELYQLVRMYRIQYSTTPNRPRQAFA 190 Query: 190 EHHRILDALADGDGELADLLMRRHIGASRRNIEHQI 225 EHHRILDA+AD DGELA+LLMRRHI ASRRNIE Q+ Sbjct: 191 EHHRILDAIADRDGELAELLMRRHISASRRNIERQL 226 >ref|YP_001350063.1| transcriptional regulator [Pseudomonas aeruginosa PA7] gb|ABR84363.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 240 Score = 340 bits (873), Expect = 8e-92, Method: Composition-based stats. Identities = 185/220 (84%), Positives = 201/220 (91%) Query: 6 ALPGAERDGETLSEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAIHRLEG 65 +L A DGETLSEHVFRKIQSAIV GEIAPGSKISEPELARTYGISRGPLREAIHRLEG Sbjct: 7 SLEIAHDDGETLSEHVFRKIQSAIVSGEIAPGSKISEPELARTYGISRGPLREAIHRLEG 66 Query: 66 QNLLVRVPHVGARVVSLTLEGLVELFQIRESLEGMACRLAAQRMSRAELDELRRVLETHE 125 LLVRVPHVGARVVSL+ L+EL++IRESLEGMACRLAA+RMS+AE+DELRRVL+THE Sbjct: 67 LRLLVRVPHVGARVVSLSHAELIELYEIRESLEGMACRLAAERMSQAEIDELRRVLDTHE 126 Query: 126 KDEAFQAGRGYYQQEGDYDFHYKIIQASGNQILTRILCGELYQLARMYRIQYSAAPNRPR 185 +DEAFQAGRGYYQQEGDYDFHY+IIQ SGN L+R+LCGELYQL RMYRIQYS PNRPR Sbjct: 127 RDEAFQAGRGYYQQEGDYDFHYRIIQGSGNATLSRMLCGELYQLVRMYRIQYSTTPNRPR 186 Query: 186 QAFAEHHRILDALADGDGELADLLMRRHIGASRRNIEHQI 225 QAFAEHHRILDA+AD DGELA+LLMRRHI ASRRNIE Q+ Sbjct: 187 QAFAEHHRILDAIADRDGELAELLMRRHISASRRNIERQL 226 >ref|YP_001748647.1| GntR family transcriptional regulator [Pseudomonas putida W619] gb|ACA72278.1| transcriptional regulator, GntR family [Pseudomonas putida W619] Length = 234 Score = 337 bits (863), Expect = 1e-90, Method: Composition-based stats. Identities = 176/217 (81%), Positives = 198/217 (91%) Query: 8 PGAERDGETLSEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQN 67 P A + ETLSE+VFR+IQ+AIV+GEIAPGSKISEPELARTYGISRGPLREAIHRLEGQ Sbjct: 9 PSASDETETLSENVFRRIQAAIVKGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQR 68 Query: 68 LLVRVPHVGARVVSLTLEGLVELFQIRESLEGMACRLAAQRMSRAELDELRRVLETHEKD 127 LLVRVPHVGARVVSL+ L+EL++IRESLEGMACRLAA+RMS+ ++DELRRVL+THE+D Sbjct: 69 LLVRVPHVGARVVSLSHAELIELYEIRESLEGMACRLAAERMSQVDIDELRRVLDTHERD 128 Query: 128 EAFQAGRGYYQQEGDYDFHYKIIQASGNQILTRILCGELYQLARMYRIQYSAAPNRPRQA 187 AFQAG GYYQQEGDYDFHY+IIQ SGNQ L ++LCGELYQL RMYRIQ+SA PNRPRQA Sbjct: 129 AAFQAGVGYYQQEGDYDFHYRIIQGSGNQTLVKMLCGELYQLVRMYRIQFSATPNRPRQA 188 Query: 188 FAEHHRILDALADGDGELADLLMRRHIGASRRNIEHQ 224 FAEHHRILDA+AD DGELA+LLMRRHIGAS+RNIE Sbjct: 189 FAEHHRILDAIADRDGELAELLMRRHIGASKRNIERH 225