BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1680.p         (173 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001099592.1| hypothetical protein HEAR1292 [Herminiimonas...    99   2e-19
ref|YP_004752046.1| hypothetical protein CFU_1391 [Collimonas fu...    68   5e-10

>ref|YP_001099592.1| hypothetical protein HEAR1292 [Herminiimonas arsenicoxydans]
 emb|CAL61465.1| hypothetical protein HEAR1292 [Herminiimonas arsenicoxydans]
          Length = 67

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/68 (72%), Positives = 58/68 (85%), Gaps = 1/68 (1%)

Query: 106 MDLVEKFDAKGKTGAPYHVEVYQTQQDEADEAARAFSRSYKLADGRALDPLTNEKFRIVQ 165
           MDLVEKFDAKGKTGA YHVEVYQT  + +DE +   S++Y+L DGRALDPL++ KF+IVQ
Sbjct: 1   MDLVEKFDAKGKTGAAYHVEVYQTPIETSDEGSPG-SKTYQLTDGRALDPLSDAKFKIVQ 59

Query: 166 TGEKIYRV 173
           TGEKIYRV
Sbjct: 60  TGEKIYRV 67


>ref|YP_004752046.1| hypothetical protein CFU_1391 [Collimonas fungivorans Ter331]
 gb|AEK61223.1| hypothetical protein CFU_1391 [Collimonas fungivorans Ter331]
          Length = 87

 Score = 68.2 bits (165), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 44/79 (55%), Positives = 46/79 (58%), Gaps = 5/79 (6%)

Query: 100 RLRRRHMDLVEKFDAKGK-TGAPYHVEVYQTQQDEADEAARAFS----RSYKLADGRALD 154
           R RR  MDL EKFDAKGK TG  YHVE Y+   + A       S      YKLADGRAL 
Sbjct: 9   RTRRHFMDLTEKFDAKGKETGNAYHVECYKDSIERAAANGTVASLPGREIYKLADGRALT 68

Query: 155 PLTNEKFRIVQTGEKIYRV 173
           P    KF I QTGEKI RV
Sbjct: 69  PYAEGKFVIDQTGEKIVRV 87