BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1679.p (309 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775688.1| hypothetical protein Hsero_2281 [Herbaspiril... 402 e-110 ref|YP_004751103.1| hypothetical protein CFU_0443 [Collimonas fu... 215 8e-54 ref|YP_001099283.1| hypothetical protein HEAR0973 [Herminiimonas... 199 5e-49 ref|YP_001943107.1| hypothetical protein Clim_1059 [Chlorobium l... 177 3e-42 ref|YP_001944015.1| hypothetical protein Clim_2004 [Chlorobium l... 169 4e-40 >ref|YP_003775688.1| hypothetical protein Hsero_2281 [Herbaspirillum seropedicae SmR1] gb|ADJ63780.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 269 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 199/252 (78%), Positives = 222/252 (88%), Gaps = 3/252 (1%) Query: 58 GSFMKNNTIRLSCLTALLLAASHPAFAAHPLNTDDAGVQGAGGIQLEMNTDWSKQSGDAG 117 GS M + +SCL LLAAS P FAAHPL TDDAGVQGAGGIQ+E NTDWS+Q+G A Sbjct: 21 GSPMTKKILGISCL---LLAASQPVFAAHPLVTDDAGVQGAGGIQIETNTDWSRQNGAAS 77 Query: 118 HVGAFTFTYGVTDKLDLFFNLPQTFQSPNGTGVGDVSAGAKWRYYEADGLALALKPELFM 177 HVGAFTFTYGVTD LDLF NLPQTFQSP GTGVGDVS GAKWR++EADGLALA KPE FM Sbjct: 78 HVGAFTFTYGVTDHLDLFTNLPQTFQSPTGTGVGDVSVGAKWRWHEADGLALAFKPEFFM 137 Query: 178 PSGEESKGLGSGRNGMGLTGIASYETGPWTLHGNLGLRYSPYKLETDQETKRKTIWRASV 237 PSG+E KGLG+G+NG+GLTGIASYETGPWTLHGN+G+R + ++ E DQ++ RKT+WRAS Sbjct: 138 PSGDEQKGLGTGKNGLGLTGIASYETGPWTLHGNIGVRLNRFQREEDQQSMRKTVWRASA 197 Query: 238 AVWYGLNEQWRLVADTGVAQNQDASSRKLPSYALVGAIWSPNKTVDIDAGAKFGLNKAEV 297 AVWYGLNEQWRLVADTG+AQN DA+S+KLPSYALVG IWSPNKTVD+DAGAKFGLNKAEV Sbjct: 198 AVWYGLNEQWRLVADTGLAQNADAASKKLPSYALVGVIWSPNKTVDLDAGAKFGLNKAEV 257 Query: 298 TRQFGVGVTLHF 309 TRQFGVGVTLHF Sbjct: 258 TRQFGVGVTLHF 269 >ref|YP_004751103.1| hypothetical protein CFU_0443 [Collimonas fungivorans Ter331] gb|AEK60280.1| hypothetical protein CFU_0443 [Collimonas fungivorans Ter331] Length = 255 Score = 215 bits (547), Expect = 8e-54, Method: Composition-based stats. Identities = 113/250 (45%), Positives = 149/250 (59%), Gaps = 17/250 (6%) Query: 72 TALLLAASHPAFAAHPLNTDDAGVQGAGGIQLEMNTDWSKQSGDAGHVGAFTFTYGVTDK 131 + L+ A+H AAHPL TDD Q +G Q+E+NTDW +Q HV FT+TYG+ Sbjct: 11 SCFLIQAAH---AAHPLVTDDTSTQDSGNHQIELNTDWLRQDAIHSHVVNFTYTYGLLKN 67 Query: 132 LDLFFNLPQTFQSPNGTGVGDVSAGAKWRYYEADGLALALKPELFMPSGEESKGLGSGRN 191 LDL+ N P T SP +G+ DV+ G KWR+ E +L LKPEL +PSG+ +GLG GR+ Sbjct: 68 LDLYANPPATLSSP--SGINDVALGVKWRFLENGDFSLGLKPELTLPSGDPERGLGHGRS 125 Query: 192 GMGLTGIASYETGPWTLHGNLGLRYSPYKLETDQETKRKTIWRASVAVWYGLNEQWRLVA 251 M LT IASY+ W GNL Y+ Y+L +DQ+ R +WRAS + Y L+ +W LV Sbjct: 126 SMSLTLIASYQIDSWAFSGNLEAFYNRYRLLSDQQANRTMVWRASASALYALDPKWSLVF 185 Query: 252 DTGVAQNQDASSRKL--------PSYALVGAIWSPNKTVDIDAGAKFGLN----KAEVTR 299 D G+ N + +S P Y L GAI+SPN +D+DAG KFGL A++ R Sbjct: 186 DGGIVSNTERASDSSGDRHASSNPGYVLTGAIYSPNPNLDLDAGIKFGLGCGACAAQIQR 245 Query: 300 QFGVGVTLHF 309 Q GVGVT F Sbjct: 246 QVGVGVTWRF 255 >ref|YP_001099283.1| hypothetical protein HEAR0973 [Herminiimonas arsenicoxydans] emb|CAL61156.1| Conserved hypothetical protein, putative porin [Herminiimonas arsenicoxydans] Length = 244 Score = 199 bits (506), Expect = 5e-49, Method: Composition-based stats. Identities = 98/227 (43%), Positives = 141/227 (62%), Gaps = 2/227 (0%) Query: 83 FAAHPLNTDDAGVQGAGGIQLEMNTDWSKQSGDAGHVGAFTFTYGVTDKLDLFFNLPQTF 142 +A HP+ TDD QG Q+E+NTDW + G G + FT+TYG++D +D+ ++P Sbjct: 20 WAMHPMVTDDTATQGRQRSQIEINTDWVRGRGYDGRIADFTYTYGLSDSVDIALDMPSNL 79 Query: 143 QSPNGTGVGDVSAGAKWRYYEADGLALALKPELFMPSGEESKGLGSGRNGMGLTGIASYE 202 SP G+ DV+ G KWR+ E DG++ A+ P L + +G E +GL +G G I SY Sbjct: 80 SSP--AGLNDVAIGFKWRFAEMDGISFAVTPTLALSTGSEQRGLSNGTYNPGAALIGSYA 137 Query: 203 TGPWTLHGNLGLRYSPYKLETDQETKRKTIWRASVAVWYGLNEQWRLVADTGVAQNQDAS 262 TG W N+G+ + Y+ + R I RAS+AV Y ++ QW +VADTG+AQN S Sbjct: 138 TGSWVWLANVGIVSNRYRQNELRAANRAIIRRASLAVTYAIDPQWTVVADTGIAQNMRRS 197 Query: 263 SRKLPSYALVGAIWSPNKTVDIDAGAKFGLNKAEVTRQFGVGVTLHF 309 + P+Y L GA++SPN+T+D+DAG KFGL +RQ GVG+T+HF Sbjct: 198 EQGNPAYFLFGAVYSPNQTIDLDAGIKFGLKNVGPSRQVGVGLTVHF 244 >ref|YP_001943107.1| hypothetical protein Clim_1059 [Chlorobium limicola DSM 245] gb|ACD90128.1| conserved hypothetical protein [Chlorobium limicola DSM 245] Length = 263 Score = 177 bits (448), Expect = 3e-42, Method: Composition-based stats. Identities = 106/256 (41%), Positives = 152/256 (59%), Gaps = 21/256 (8%) Query: 73 ALLLAASHPAFAAHPLNTDDAGVQGAGGIQLEMNT----DWSKQSG-----DAGHVGAFT 123 +LLL AS P +AAHPL +DD G QG G QLE+N+ D S++ G G V A Sbjct: 10 SLLLCAS-PLYAAHPLVSDDTGTQGQGNWQLELNSEFFSDRSREGGITQKESGGEVSA-A 67 Query: 124 FTYGVTDKLDLFFNLPQTFQ--------SPNGTGVGDVSAGAKWRYYEAD--GLALALKP 173 ++G++D +DL N P + + + +G+GD+S KWR+++ D G +LALKP Sbjct: 68 LSFGLSDCIDLVVNCPLAWYEVKEDGVVAADESGIGDLSVELKWRFFDDDQNGFSLALKP 127 Query: 174 ELFMPSGEESKGLGSGRNGMGLTGIASYETGPWTLHGNLGLRYSPYKLETDQETKRKTIW 233 L +P+G+E KGLGSG G+ IA+ +GP TLH N G + Y L+ D+E RK IW Sbjct: 128 GLSLPTGDEHKGLGSGEISGGVLLIATKASGPLTLHANAGYTRNGYALQEDEEGLRKDIW 187 Query: 234 RASVAVWYGLNEQWRLVADTGVAQNQDASSRKLPSYALVGAIWSPNKTVDIDAGAKFGLN 293 AS+A Y L+E+ R VAD G+A N++ S + P++ L G I+S ++ +D+D G K GLN Sbjct: 188 SASLAGEYELSEKLRAVADIGMATNEEKGSAEHPAFLLGGLIYSASENLDLDCGFKAGLN 247 Query: 294 KAEVTRQFGVGVTLHF 309 AE F G+ F Sbjct: 248 DAETDSTFLFGMATRF 263 >ref|YP_001944015.1| hypothetical protein Clim_2004 [Chlorobium limicola DSM 245] gb|ACD91036.1| conserved hypothetical protein [Chlorobium limicola DSM 245] Length = 266 Score = 169 bits (429), Expect = 4e-40, Method: Composition-based stats. Identities = 98/262 (37%), Positives = 145/262 (55%), Gaps = 18/262 (6%) Query: 66 IRLSCLTALLLAASHPAFAAHPLNTDDAGVQGAGGIQLEMNTD--WSKQSGDAGHVG--- 120 IRL TA+ L ++ P F AHPL TDD G QG G IQ+E+N++ W++ D V Sbjct: 5 IRLVTATAVSLLSAAPVFGAHPLVTDDTGTQGKGKIQIELNSEFAWNRTDADGSEVKENT 64 Query: 121 ---AFTFTYGVTDKLDLFFNLPQTFQS--PNGT------GVGDVSAGAKWRYYE--ADGL 167 A +YG+T+ +D+ +P + + NGT G+GD+S KWR YE +GL Sbjct: 65 GETALALSYGLTETIDVVAGIPFGWYTLEENGTTLCDDSGIGDMSVELKWRVYENEENGL 124 Query: 168 ALALKPELFMPSGEESKGLGSGRNGMGLTGIASYETGPWTLHGNLGLRYSPYKLETDQET 227 + A+KP + +P+G+E KG GSG GLT IA++E +LH N+G + YK E D Sbjct: 125 SFAVKPGISIPTGDERKGFGSGEVSPGLTLIATHEGDFGSLHANVGYSRNNYKNEDDDAA 184 Query: 228 KRKTIWRASVAVWYGLNEQWRLVADTGVAQNQDASSRKLPSYALVGAIWSPNKTVDIDAG 287 R +W AS A + + R VA+ G+ N+D +S P + + G I S ++ +D+D G Sbjct: 185 SRNDLWHASFAAELNMTDNLRSVANIGIETNEDITSDTHPVFLIGGLICSISEDLDLDIG 244 Query: 288 AKFGLNKAEVTRQFGVGVTLHF 309 K+GLN+AE G+ F Sbjct: 245 LKYGLNEAETDTALLAGLAARF 266