BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1678.p (343 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775687.1| two component response regulator protein [He... 509 e-142 ref|YP_003774656.1| regulator of the two-component system protei... 211 2e-52 ref|YP_004696329.1| response regulator receiver modulated diguan... 182 7e-44 ref|YP_002890202.1| response regulator receiver modulated diguan... 182 1e-43 ref|YP_003759701.1| response regulator receiver modulated diguan... 175 1e-41 >ref|YP_003775687.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63779.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 310 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 256/308 (83%), Positives = 281/308 (91%) Query: 34 MSHYVDPKVFRELQDSEVLPAPSGVRLKIMQMCQQEDIALPDLVAQVQGDPVLAGRLIQI 93 MS YVDP+ FRE+QDSEVLPAPSGVRLKIMQMCQQEDIALP+LVAQVQGDPVLAGRLIQI Sbjct: 1 MSTYVDPQTFREMQDSEVLPAPSGVRLKIMQMCQQEDIALPELVAQVQGDPVLAGRLIQI 60 Query: 94 ANIPNINKGRMVAAVNVELLLMVGLHAVRQMALAISLTESARRGDCKEFDYDLFWSRSTA 153 ANIPNINKGRMVA+VNVELLLMVGLHAVRQMALAISLTESARRGDC EFDYD FWSRSTA Sbjct: 61 ANIPNINKGRMVASVNVELLLMVGLHAVRQMALAISLTESARRGDCAEFDYDAFWSRSTA 120 Query: 154 MACAGQALGELLQVAPPAEMFTVALLADIGRLGLASARPRRYGELLRSGAQGTALRAQEK 213 MACAGQALG+LLQVAPPAEMFT+ LLA IG+LGLASARP+RYGELL +GA+ LR QE+ Sbjct: 121 MACAGQALGDLLQVAPPAEMFTIGLLAGIGQLGLASARPKRYGELLLAGAKDAQLRVQER 180 Query: 214 EVFGFNHLELAAAMMQDWHFPKLFCETVLYHHDADNTGMDEEDRQQRLIRLLELAACVAD 273 E FGF+HL LAAAMMQDWHFP++FCE VL+H D +G++E+DRQQ++ RLLELA CVAD Sbjct: 181 ESFGFDHLALAAAMMQDWHFPRIFCEAVLHHRDPAASGLEEDDRQQKVTRLLELAGCVAD 240 Query: 274 VCVASDAARPALLPRLLALGERFELPLSSLEYLCGRVSWDWSDWGALLKVPTRVLREIGT 333 VC ASDA R ALLPRLL LG+ F LP+SSLEY+CGRVSWDWSDWGALLKVPTRVLREIG Sbjct: 241 VCTASDAQRAALLPRLLQLGQHFALPVSSLEYVCGRVSWDWSDWGALLKVPTRVLREIGP 300 Query: 334 ELAAAAEK 341 ELAAAAE+ Sbjct: 301 ELAAAAEQ 308 >ref|YP_003774656.1| regulator of the two-component system protein [Herbaspirillum seropedicae SmR1] gb|ADJ62748.1| regulator of the two-component system protein [Herbaspirillum seropedicae SmR1] Length = 317 Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats. Identities = 117/290 (40%), Positives = 173/290 (59%) Query: 34 MSHYVDPKVFRELQDSEVLPAPSGVRLKIMQMCQQEDIALPDLVAQVQGDPVLAGRLIQI 93 M +++P +F +L+ ++ LP+P GVRL IM++C Q++ + +L+ VQ DP L+GR+I+I Sbjct: 1 MLTFIEPTLFDKLRSAQALPSPGGVRLTIMRLCAQDNPDMAELIHLVQADPALSGRIIRI 60 Query: 94 ANIPNINKGRMVAAVNVELLLMVGLHAVRQMALAISLTESARRGDCKEFDYDLFWSRSTA 153 N+ N + R +A+V+++ LL+VGL AVRQ+ALA+SL E+ C F FW+ S A Sbjct: 61 VNVLNAQRVRPIASVSMDSLLLVGLQAVRQLALALSLAETRAPASCANFSLPAFWAHSFA 120 Query: 154 MACAGQALGELLQVAPPAEMFTVALLADIGRLGLASARPRRYGELLRSGAQGTALRAQEK 213 MAC+ QA+ L+VAP EMFT LLA+IG+L LASA+P Y LL A RA E+ Sbjct: 121 MACSAQAVTSQLRVAPLGEMFTTGLLANIGKLTLASAQPTGYSALLTRALDAPARRAMEQ 180 Query: 214 EVFGFNHLELAAAMMQDWHFPKLFCETVLYHHDADNTGMDEEDRQQRLIRLLELAACVAD 273 +FGFNHL +AAA+MQDW P LFC+ VL++ G RQ ++ L LA +A+ Sbjct: 181 SLFGFNHLNIAAALMQDWKIPDLFCDAVLHYETPVVIGEIAATRQDEIVWTLHLAQAMAE 240 Query: 274 VCVASDAARPALLPRLLALGERFELPLSSLEYLCGRVSWDWSDWGALLKV 323 + A L R + +L L L + DW +W +++ Sbjct: 241 LGCGPAQQAQAALARAGTALAQLQLAPHDLLVLYQQAGQDWQEWTQTMRI 290 >ref|YP_004696329.1| response regulator receiver modulated diguanylate cyclase [Nitrosomonas sp. Is79A3] gb|AEJ02930.1| response regulator receiver modulated diguanylate cyclase [Nitrosomonas sp. Is79A3] Length = 645 Score = 182 bits (462), Expect = 7e-44, Method: Composition-based stats. Identities = 98/280 (35%), Positives = 156/280 (55%), Gaps = 2/280 (0%) Query: 45 ELQDSEVLPAPSGVRLKIMQMCQQEDIALPDLVAQVQGDPVLAGRLIQIANIPNINKGRM 104 +L+ +LP+P GV L +++ CQ+ED+ + ++ +Q DP L+GRLIQ AN N + R Sbjct: 8 QLKIGTLLPSPKGVALALLEACQREDVTINEITKLIQTDPALSGRLIQRANATN-QRSRA 66 Query: 105 VAAVNVELLLMVGLHAVRQMALAISLTESARRGDCKEFDYDLFWSRSTAMACAGQALGEL 164 +++V E + VGL V+Q+A+ SL + + G CK F+Y FWS S MA A Q LG+ Sbjct: 67 ISSV-FEAVPHVGLTVVKQLAMGFSLIDQYQEGACKGFNYQEFWSHSLLMAIAMQELGKT 125 Query: 165 LQVAPPAEMFTVALLADIGRLGLASARPRRYGELLRSGAQGTALRAQEKEVFGFNHLELA 224 +V+ P E+F L+ IG L LA+ P +Y EL+ + G L E++ +H EL Sbjct: 126 TRVSAPDELFACGLMMRIGCLALATIYPDKYTELIAKQSPGITLNELEQQYLQTDHNELT 185 Query: 225 AAMMQDWHFPKLFCETVLYHHDADNTGMDEEDRQQRLIRLLELAACVADVCVASDAARPA 284 AAM+ ++ P++F E + YH +G E R +++ LL LA +AD +A ++ R Sbjct: 186 AAMLINFGVPRIFVEPIYYHEIPTESGFSEGSRPYQIVHLLYLAKQIADFGLAEESERNQ 245 Query: 285 LLPRLLALGERFELPLSSLEYLCGRVSWDWSDWGALLKVP 324 + L+ G R L + ++ W WG +LK+P Sbjct: 246 RISELILFGGRIGLDTETFGTFIDQIMQAWHAWGQILKLP 285 >ref|YP_002890202.1| response regulator receiver modulated diguanylate cyclase [Thauera sp. MZ1T] gb|ACR01825.1| response regulator receiver modulated diguanylate cyclase [Thauera sp. MZ1T] Length = 642 Score = 182 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 108/294 (36%), Positives = 163/294 (55%), Gaps = 3/294 (1%) Query: 34 MSHYVDPKVFRELQDSEVLPAPSGVRLKIMQMCQQEDIALPDLVAQVQGDPVLAGRLIQI 93 M +D K + +L+ + LP+P GV L I+++ Q D++L +L ++GDP GRLI+ Sbjct: 1 MPQPIDMKRYAQLKAAGDLPSPRGVALAIIRLTQAPDVSLAELGRVIKGDPAFVGRLIKA 60 Query: 94 ANIPNINKGRMVAAVNVELLLMVGLHAVRQMALAISLTESARRGDCKEFDYDLFWSRSTA 153 AN R + +V E L+++GL AVR +AL SL + R+G C+ FDY FWS + Sbjct: 61 ANGLIAENRRAIVSVQ-EALMVLGLPAVRTLALGFSLLSTYRKGTCQGFDYPRFWSSALL 119 Query: 154 MACAGQALGELLQVAPPAEMFTVALLADIGRLGLASARPRRYGELLRSGAQGTALR--AQ 211 MA + QAL + ++V P E F++ LLA +G L LA+ P + LL + AL+ Sbjct: 120 MAISMQALTQRVRVVAPDEAFSLGLLARVGELSLATLYPEAFSRLLAELKRDPALQQVVL 179 Query: 212 EKEVFGFNHLELAAAMMQDWHFPKLFCETVLYHHDADNTGMDEEDRQQRLIRLLELAACV 271 E + F NH EL AAM+ DW P + V +H + G E+ R+ +++ L LA V Sbjct: 180 EDQAFAMNHRELGAAMLADWGVPDALVQPVRFHEQPELAGYAEDSREAGIVQCLVLARAV 239 Query: 272 ADVCVASDAARPALLPRLLALGERFELPLSSLEYLCGRVSWDWSDWGALLKVPT 325 A +C+A D+ L+ +L L R L LC RV DW++WG LL++ T Sbjct: 240 AQLCLAPDSEHVRLMAPMLRLAGRLGLGRGEFVSLCERVGRDWAEWGKLLQIRT 293 >ref|YP_003759701.1| response regulator receiver modulated diguanylate cyclase [Nitrosococcus watsonii C-113] gb|ADJ27380.1| response regulator receiver modulated diguanylate cyclase [Nitrosococcus watsonii C-113] Length = 641 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 112/286 (39%), Positives = 162/286 (56%), Gaps = 3/286 (1%) Query: 43 FRELQDSEVLPAPSGVRLKIMQMCQQEDIALPDLVAQVQGDPVLAGRLIQIANIPNINKG 102 F EL+ LP+PSGV L+IM++ Q+E+ ++ DL +Q DP LAGRL++ AN ++ Sbjct: 7 FDELKAMGDLPSPSGVALEIMRLTQREETSIQDLARVIQADPALAGRLLKFANSASVGVR 66 Query: 103 RMVAAVNVELLLMVGLHAVRQMALAISLTESARRGDCKEFDYDLFWSRSTAMACAGQALG 162 R V A+ +++ ++G+ A+RQ L IS+ + G C+ FDY FWS S A A A QAL Sbjct: 67 RPVVAIE-DVVKLLGIAAIRQFVLGISVLSNYSHGRCEGFDYPGFWSHSLATALAAQALA 125 Query: 163 ELLQVAPPAEMFTVALLADIGRLGLASARPRRYGELLR--SGAQGTALRAQEKEVFGFNH 220 L +V P E FT LLA +G+LGLA+ P Y +L S A AL A+E E F NH Sbjct: 126 GLERVIAPEEAFTCGLLARVGQLGLAAIYPDSYTAVLLSCSHADEQALLAREHEKFVTNH 185 Query: 221 LELAAAMMQDWHFPKLFCETVLYHHDADNTGMDEEDRQQRLIRLLELAACVADVCVASDA 280 E+ A+++DW P + E + + ++ R QR+ R L + +A CVA A Sbjct: 186 REMTIALLEDWGLPAVHLEGIAASYQPGPGELEGASRVQRIARQLYFSGHIARFCVAQAA 245 Query: 281 ARPALLPRLLALGERFELPLSSLEYLCGRVSWDWSDWGALLKVPTR 326 + L L L FEL +SLE L +++ W +WG LL VPT+ Sbjct: 246 EQSERLANLEELAFSFELDEASLERLLKKITQAWIEWGRLLAVPTQ 291