BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1677.p (416 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775686.1| exonuclease of the beta-lactamase fold invol... 318 1e-84 ref|ZP_08273087.1| mRNA 3'-end processing factor [Oxalobacterace... 291 1e-76 ref|YP_004352339.1| mRNA 3\\-end processing factor [Pseudomonas ... 290 3e-76 gb|EGH57988.1| mRNA 3''''-end processing factor [Pseudomonas syr... 287 2e-75 gb|EGH79645.1| hypothetical protein PSYAP_23696 [Pseudomonas syr... 284 2e-74 >ref|YP_003775686.1| exonuclease of the beta-lactamase fold involved in RNA processing protein [Herbaspirillum seropedicae SmR1] gb|ADJ63778.1| exonuclease of the beta-lactamase fold involved in RNA processing protein [Herbaspirillum seropedicae SmR1] Length = 355 Score = 318 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 165/221 (74%), Positives = 179/221 (80%), Gaps = 3/221 (1%) Query: 131 AAAGTPRVGHGHYLAAAPGAGILRARLGAEINLQPLPYGETITHNGVRLSLHPAGHVLGS 190 A A RVGH HYLAAAPGA ILRARLGA+I L L YG ++THNGVRLSLHPAGHVLGS Sbjct: 35 AHADHARVGHAHYLAAAPGADILRARLGADIALDTLAYGASLTHNGVRLSLHPAGHVLGS 94 Query: 191 AQLRMEHEGRIWVASGDYKLEADGTCAPFEPVRCDAFITESTFGMPIYRWQPQREIFEEI 250 AQLRMEHEG++WVASGDYKLEADGTCAPFEPVRC FITESTFGMPIYRWQPQ EIFEEI Sbjct: 95 AQLRMEHEGQVWVASGDYKLEADGTCAPFEPVRCHTFITESTFGMPIYRWQPQAEIFEEI 154 Query: 251 NQWWRSNAAEGRASVLFCYSFGKAQRILHGIDASIGPIVCHGAVEPLNRLYREAGIALPE 310 N WWR+NAA+GRASVLFCY+FGKAQRILHGIDASIGPI+CHGAV PLNRLYR+ G+ALPE Sbjct: 155 NAWWRANAAQGRASVLFCYAFGKAQRILHGIDASIGPIICHGAVAPLNRLYRQEGVALPE 214 Query: 311 PRHRRPGRPGYAASATTAMPSPA-AGCACAA--RAAGVVWI 348 + G PG + PS A AG A AAG W+ Sbjct: 215 TQTVNQGSPGSKSDGGKRSPSSAYAGSLVIAPPSAAGSPWM 255 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 110/148 (74%), Positives = 122/148 (82%) Query: 1 MEHEGRIWVASGDYKLEADGTCAPFEPVRCDAFITESTFGMPIYRWQPQREIFEEINQWW 60 MEHEG++WVASGDYKLEADGTCAPFEPVRC FITESTFGMPIYRWQPQ EIFEEIN WW Sbjct: 99 MEHEGQVWVASGDYKLEADGTCAPFEPVRCHTFITESTFGMPIYRWQPQAEIFEEINAWW 158 Query: 61 RSNAAEGRASVLFCYSFGKAQRILHGIDASIGPIVCHGAVEPLNRLYREAGIALPETLTV 120 R+NAA+GRASVLFCY+FGKAQRILHGIDASIGPI+CHGAV PLNRLYR+ G+ALPET TV Sbjct: 159 RANAAQGRASVLFCYAFGKAQRILHGIDASIGPIICHGAVAPLNRLYRQEGVALPETQTV 218 Query: 121 GEAEAGKRGKAAAGTPRVGHGHYLAAAP 148 + G + +P + L AP Sbjct: 219 NQGSPGSKSDGGKRSPSSAYAGSLVIAP 246 >ref|ZP_08273087.1| mRNA 3'-end processing factor [Oxalobacteraceae bacterium IMCC9480] gb|EGF33432.1| mRNA 3'-end processing factor [Oxalobacteraceae bacterium IMCC9480] Length = 340 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 136/178 (76%), Positives = 154/178 (86%), Gaps = 1/178 (0%) Query: 133 AGTPRVGHGHYLAAAPGAGILRARLGAEINLQPLPYGETITHNGVRLSLHPAGHVLGSAQ 192 A R GHGHYLA A GAGIL +RLG +INLQ L YGET+ HNGV +SLHPAGHVLGSAQ Sbjct: 37 ADHSRTGHGHYLATAAGAGILHSRLG-KINLQTLAYGETLLHNGVTISLHPAGHVLGSAQ 95 Query: 193 LRMEHEGRIWVASGDYKLEADGTCAPFEPVRCDAFITESTFGMPIYRWQPQREIFEEINQ 252 +R+E+ G +WVASGDYK+EAD TCA FEPVRCD FITESTFG+PIYRWQ Q+EIF+EINQ Sbjct: 96 VRLEYRGEVWVASGDYKVEADATCAAFEPVRCDTFITESTFGLPIYRWQAQQEIFDEINQ 155 Query: 253 WWRSNAAEGRASVLFCYSFGKAQRILHGIDASIGPIVCHGAVEPLNRLYREAGIALPE 310 WWR NAA+GRASVLFCYSFGK QR+L G+D SIGPI+CH A EPLNR+YREAGIALP+ Sbjct: 156 WWRDNAADGRASVLFCYSFGKTQRLLSGVDPSIGPIICHSAAEPLNRVYREAGIALPD 213 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 94/122 (77%), Positives = 108/122 (88%) Query: 1 MEHEGRIWVASGDYKLEADGTCAPFEPVRCDAFITESTFGMPIYRWQPQREIFEEINQWW 60 +E+ G +WVASGDYK+EAD TCA FEPVRCD FITESTFG+PIYRWQ Q+EIF+EINQWW Sbjct: 98 LEYRGEVWVASGDYKVEADATCAAFEPVRCDTFITESTFGLPIYRWQAQQEIFDEINQWW 157 Query: 61 RSNAAEGRASVLFCYSFGKAQRILHGIDASIGPIVCHGAVEPLNRLYREAGIALPETLTV 120 R NAA+GRASVLFCYSFGK QR+L G+D SIGPI+CH A EPLNR+YREAGIALP++L V Sbjct: 158 RDNAADGRASVLFCYSFGKTQRLLSGVDPSIGPIICHSAAEPLNRVYREAGIALPDSLLV 217 Query: 121 GE 122 E Sbjct: 218 TE 219 >ref|YP_004352339.1| mRNA 3\\-end processing factor [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA67335.1| Conserved hypothetical protein; putative mRNA 3\\-end processing factor [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 343 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 134/173 (77%), Positives = 153/173 (88%) Query: 137 RVGHGHYLAAAPGAGILRARLGAEINLQPLPYGETITHNGVRLSLHPAGHVLGSAQLRME 196 R G+ HYLAAAPG GILR+RLG +INLQ LPYGE ++H+GV LS HPAGHVLGSAQ+R+E Sbjct: 40 RSGNQHYLAAAPGEGILRSRLGQDINLQTLPYGERLSHHGVTLSFHPAGHVLGSAQVRLE 99 Query: 197 HEGRIWVASGDYKLEADGTCAPFEPVRCDAFITESTFGMPIYRWQPQREIFEEINQWWRS 256 ++G +WVASGDYK+E DGTC PFEPV+C FITESTFG+PIYRWQPQ +IFEEINQWWR Sbjct: 100 YQGEVWVASGDYKVEPDGTCTPFEPVKCHTFITESTFGLPIYRWQPQAQIFEEINQWWRG 159 Query: 257 NAAEGRASVLFCYSFGKAQRILHGIDASIGPIVCHGAVEPLNRLYREAGIALP 309 N A GRASVLFCYSFGKAQRILHGID S+GPI+ HGAVEPLNR+YREAG+ LP Sbjct: 160 NIAAGRASVLFCYSFGKAQRILHGIDESLGPILAHGAVEPLNRVYREAGVHLP 212 Score = 206 bits (524), Expect = 7e-51, Method: Composition-based stats. Identities = 92/118 (77%), Positives = 105/118 (88%) Query: 1 MEHEGRIWVASGDYKLEADGTCAPFEPVRCDAFITESTFGMPIYRWQPQREIFEEINQWW 60 +E++G +WVASGDYK+E DGTC PFEPV+C FITESTFG+PIYRWQPQ +IFEEINQWW Sbjct: 98 LEYQGEVWVASGDYKVEPDGTCTPFEPVKCHTFITESTFGLPIYRWQPQAQIFEEINQWW 157 Query: 61 RSNAAEGRASVLFCYSFGKAQRILHGIDASIGPIVCHGAVEPLNRLYREAGIALPETL 118 R N A GRASVLFCYSFGKAQRILHGID S+GPI+ HGAVEPLNR+YREAG+ LP T+ Sbjct: 158 RGNIAAGRASVLFCYSFGKAQRILHGIDESLGPILAHGAVEPLNRVYREAGVHLPPTI 215 >gb|EGH57988.1| mRNA 3''''-end processing factor [Pseudomonas syringae pv. maculicola str. ES4326] Length = 323 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 134/177 (75%), Positives = 155/177 (87%) Query: 137 RVGHGHYLAAAPGAGILRARLGAEINLQPLPYGETITHNGVRLSLHPAGHVLGSAQLRME 196 R G+ HYL+AA G GILR+RLG +INLQ L YGETITH+GV+LSLHPAGHVLGSAQ+R+E Sbjct: 15 RTGNQHYLSAASGEGILRSRLGQDINLQTLEYGETITHHGVKLSLHPAGHVLGSAQVRLE 74 Query: 197 HEGRIWVASGDYKLEADGTCAPFEPVRCDAFITESTFGMPIYRWQPQREIFEEINQWWRS 256 +EG +WVASGDYK+E DGTCA FEPVRC FITESTFG+PIYRW PQ +IFE IN+WWR Sbjct: 75 YEGEVWVASGDYKVEPDGTCAAFEPVRCHTFITESTFGLPIYRWAPQSQIFEGINEWWRG 134 Query: 257 NAAEGRASVLFCYSFGKAQRILHGIDASIGPIVCHGAVEPLNRLYREAGIALPEPRH 313 NAA+G+ASVLF YSFGKAQRILHGID+ IGPI+ HGAVEPLNR+YRE GI +PE R+ Sbjct: 135 NAAQGKASVLFAYSFGKAQRILHGIDSQIGPILVHGAVEPLNRVYREGGIRIPETRY 191 Score = 201 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 91/122 (74%), Positives = 105/122 (86%) Query: 1 MEHEGRIWVASGDYKLEADGTCAPFEPVRCDAFITESTFGMPIYRWQPQREIFEEINQWW 60 +E+EG +WVASGDYK+E DGTCA FEPVRC FITESTFG+PIYRW PQ +IFE IN+WW Sbjct: 73 LEYEGEVWVASGDYKVEPDGTCAAFEPVRCHTFITESTFGLPIYRWAPQSQIFEGINEWW 132 Query: 61 RSNAAEGRASVLFCYSFGKAQRILHGIDASIGPIVCHGAVEPLNRLYREAGIALPETLTV 120 R NAA+G+ASVLF YSFGKAQRILHGID+ IGPI+ HGAVEPLNR+YRE GI +PET Sbjct: 133 RGNAAQGKASVLFAYSFGKAQRILHGIDSQIGPILVHGAVEPLNRVYREGGIRIPETRYA 192 Query: 121 GE 122 G+ Sbjct: 193 GD 194 >gb|EGH79645.1| hypothetical protein PSYAP_23696 [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 348 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 134/177 (75%), Positives = 156/177 (88%) Query: 137 RVGHGHYLAAAPGAGILRARLGAEINLQPLPYGETITHNGVRLSLHPAGHVLGSAQLRME 196 R G+ HYL+AA G GILR+RLG +INLQ L YGETITH+GV+LSLHPAGHVLGSAQ+R+E Sbjct: 40 RTGNEHYLSAASGEGILRSRLGQDINLQTLEYGETITHHGVKLSLHPAGHVLGSAQVRLE 99 Query: 197 HEGRIWVASGDYKLEADGTCAPFEPVRCDAFITESTFGMPIYRWQPQREIFEEINQWWRS 256 ++G +WVASGDYK+E DGTCA FEPVRC FITESTFG+PIYRW PQ +IFE INQWWR+ Sbjct: 100 YQGEVWVASGDYKVEPDGTCAAFEPVRCHTFITESTFGLPIYRWAPQAQIFEGINQWWRA 159 Query: 257 NAAEGRASVLFCYSFGKAQRILHGIDASIGPIVCHGAVEPLNRLYREAGIALPEPRH 313 NAA+G+ASVLF YSFGKAQRILHGIDA IGPI+ HGAVEPLNR+YRE GI +PE ++ Sbjct: 160 NAAQGKASVLFAYSFGKAQRILHGIDAQIGPILVHGAVEPLNRVYREGGIYIPETKY 216 Score = 200 bits (509), Expect = 3e-49, Method: Composition-based stats. Identities = 92/122 (75%), Positives = 106/122 (86%) Query: 1 MEHEGRIWVASGDYKLEADGTCAPFEPVRCDAFITESTFGMPIYRWQPQREIFEEINQWW 60 +E++G +WVASGDYK+E DGTCA FEPVRC FITESTFG+PIYRW PQ +IFE INQWW Sbjct: 98 LEYQGEVWVASGDYKVEPDGTCAAFEPVRCHTFITESTFGLPIYRWAPQAQIFEGINQWW 157 Query: 61 RSNAAEGRASVLFCYSFGKAQRILHGIDASIGPIVCHGAVEPLNRLYREAGIALPETLTV 120 R+NAA+G+ASVLF YSFGKAQRILHGIDA IGPI+ HGAVEPLNR+YRE GI +PET Sbjct: 158 RANAAQGKASVLFAYSFGKAQRILHGIDAQIGPILVHGAVEPLNRVYREGGIYIPETKYA 217 Query: 121 GE 122 G+ Sbjct: 218 GD 219