BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1675.p (865 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775684.1| ATP-dependent helicase superfamily II protei... 1338 0.0 ref|YP_001020714.1| helicase [Methylibium petroleiphilum PM1] >g... 993 0.0 ref|YP_004157763.1| dead/h associated domain-containing protein ... 982 0.0 ref|ZP_07674333.1| helicase domain protein [Ralstonia sp. 5_7_47... 970 0.0 ref|YP_004474141.1| DEAD/DEAH box helicase [Pseudomonas fulva 12... 961 0.0 >ref|YP_003775684.1| ATP-dependent helicase superfamily II protein [Herbaspirillum seropedicae SmR1] gb|ADJ63776.1| ATP-dependent helicase superfamily II protein [Herbaspirillum seropedicae SmR1] Length = 855 Score = 1338 bits (3462), Expect = 0.0, Method: Composition-based stats. Identities = 754/855 (88%), Positives = 795/855 (92%), Gaps = 4/855 (0%) Query: 1 MPRNPRSSRASASACAGSAHAAQSALTAAETWFQRRGWEVFDFQRAVWQAAQQGRSGLLH 60 MPRNPRSSRASASACAGSAHAAQSALTAAETWFQRRGW+VFDFQR VWQAAQQGRSGLLH Sbjct: 1 MPRNPRSSRASASACAGSAHAAQSALTAAETWFQRRGWQVFDFQREVWQAAQQGRSGLLH 60 Query: 61 SGTGSGKTYAVWFGALLHAEPRLGQPDLPANAPGLRVLWITPMRALAADTLRALQAPLAD 120 + TGSGKTYAVWFGALLHA+P LGQP A GLRVLWITPMRALAADTLRALQ PL + Sbjct: 61 ASTGSGKTYAVWFGALLHAQPSLGQPTQGATTNGLRVLWITPMRALAADTLRALQEPLPE 120 Query: 121 LLPHWQAGMRTGDTASGERARQMKSLPQALVTTPESLSLLLSQADARQRFARLDAVIVDE 180 LLPHWQAGMRTGDT S ERARQMK+LPQ LVTTPESLSLLLSQADARQRF +LDAVIVDE Sbjct: 121 LLPHWQAGMRTGDTGSSERARQMKALPQVLVTTPESLSLLLSQADARQRFGKLDAVIVDE 180 Query: 181 WHELMGNKRGVQVQLALARLRRWRPGMVVWGLSATLGNLEQSLQALLGPAAAEQGVLVRG 240 WHELMGNKRGVQVQLALARLRRWRP MVVWGLSATLGNLEQSLQALLGP A QGVLVRG Sbjct: 181 WHELMGNKRGVQVQLALARLRRWRPQMVVWGLSATLGNLEQSLQALLGPDQAAQGVLVRG 240 Query: 241 EQRKRIVIDTLLPPQPARFAWAGHLGMQMLPAVVQEIEASGSTLVFTNTRSQAELWYQNL 300 +QRKRI+IDTLLPPQPARFAWAGHLG+QMLP VV EI++S STLVFTNTRSQAELWYQNL Sbjct: 241 QQRKRILIDTLLPPQPARFAWAGHLGLQMLPGVVAEIDSSNSTLVFTNTRSQAELWYQNL 300 Query: 301 LDARPDWAGIIALHHGSLDREVRDWVEHGLRDGRLKAVVCTSSLDLGVDFTPVERVLQIG 360 L+ARPDWAG+IALHHGSLDREVR+WVE GLRDGRLKAVVCTSSLDLGVDFTPVERVLQIG Sbjct: 301 LEARPDWAGLIALHHGSLDREVREWVEQGLRDGRLKAVVCTSSLDLGVDFTPVERVLQIG 360 Query: 361 SPRGVARLLQRAGRSGHSPGRSSRATLVPTNSLELVEAIAAQDAVAAGRVEQRPVPETPL 420 SPRGVARLLQRAGRSGH+PGR SRATLVPTNSLELVEA AAQDAVAAG+VEQRPVPE PL Sbjct: 361 SPRGVARLLQRAGRSGHAPGRVSRATLVPTNSLELVEAAAAQDAVAAGQVEQRPVPEAPL 420 Query: 421 DVLVQHLVTIALGGGFQADALLDEVRQAWSYRDLREDQWQWALDFVVRGGRSLTAYPEYH 480 DVLVQHLVTIALGGGF+ D L DEVRQAWSYR LREDQWQWALDFVVRGG+SLTAYPEY Sbjct: 421 DVLVQHLVTIALGGGFRPDELFDEVRQAWSYRALREDQWQWALDFVVRGGQSLTAYPEYQ 480 Query: 481 RVRQGEDGVYRVDVPAIARRHRMNIGTIVADASLHVQYMKGGRIGTIEEGFIARLRPGDR 540 RV+ +G+YRV PAIA RHR+NIGTIVADASLHVQY+KGGRIGTIEEGFIARLRPGDR Sbjct: 481 RVQADAEGIYRVPQPAIATRHRLNIGTIVADASLHVQYLKGGRIGTIEEGFIARLRPGDR 540 Query: 541 FLFGGRVLEFVRVHEMTAWVRRSTAGSGAVPRWQGGRMPLSSTLAHAVLDRLQQAEQQHF 600 FLFGGRVLEFVRVHEMTAWVRRS++GSGAVPRWQGGRMPLSSTLAHAVLDRL+QA Q F Sbjct: 541 FLFGGRVLEFVRVHEMTAWVRRSSSGSGAVPRWQGGRMPLSSTLAHAVLDRLEQAAQARF 600 Query: 601 DGPEMQAVQPLLALQHAWSALPTGERLVVEALKSREGHHLFFYPFAGRLVHMGLASLLAW 660 DGPEMQAV+PLLALQHAWSALPTG+RLVVEALKSREGHHLFFYPFAGRLVHMGLASLLAW Sbjct: 601 DGPEMQAVEPLLALQHAWSALPTGQRLVVEALKSREGHHLFFYPFAGRLVHMGLASLLAW 660 Query: 661 RLASTRAATFSIAVNDYGFELLAADQVEMARLAPQEAQDLFSEEHLLEDVLASLNATELS 720 RLA +AA+FSIAVNDYGFELL A Q + +LA +AQ LFS+ LL+DVL+SLNATELS Sbjct: 661 RLARQQAASFSIAVNDYGFELLGAQQAPLEQLAAHQAQTLFSDHDLLQDVLSSLNATELS 720 Query: 721 QRRFREIARIAGLVSQGYPGQHKSARQLQASSALFFEVFRKHDAGNLLLTQAQREVLEQE 780 QRRFREIARIAGLVSQGYPGQHKSARQLQASSALFFEVFRKHDA NLLLTQAQREVLEQE Sbjct: 721 QRRFREIARIAGLVSQGYPGQHKSARQLQASSALFFEVFRKHDANNLLLTQAQREVLEQE 780 Query: 781 LELERLRSTLAELRARTMTLVQLERPTPFALPLMVERFREKLSTEKLADRVARMLRELEG 840 LEL RLRSTLAELRART+TLV+L+RPTPFALPLMVERFREKLSTEKLADRVARMLRELE Sbjct: 781 LELARLRSTLAELRARTLTLVRLQRPTPFALPLMVERFREKLSTEKLADRVARMLRELES 840 Query: 841 AAD----KTASREQP 851 AAD KTA+R +P Sbjct: 841 AADASAGKTAARRRP 855 >ref|YP_001020714.1| helicase [Methylibium petroleiphilum PM1] gb|ABM94479.1| helicase [Methylibium petroleiphilum PM1] Length = 825 Score = 993 bits (2568), Expect = 0.0, Method: Composition-based stats. Identities = 562/822 (68%), Positives = 657/822 (79%), Gaps = 7/822 (0%) Query: 24 SALTAAETWFQRRGWEVFDFQRAVWQAAQQGRSGLLHSGTGSGKTYAVWFGALLHA-EPR 82 S A + WF RGW+ F FQR VW AA +G SGLLH+ TG+GKTYAVWF AL A + R Sbjct: 6 SPPAALDGWFAARGWQPFAFQRRVWAAAARGHSGLLHATTGAGKTYAVWFAALGRALQQR 65 Query: 83 LGQPDLPANAPGLRVLWITPMRALAADTLRALQAPLADLLPHWQAGMRTGDTASGERARQ 142 D ++ GLRVLW+TPMRALAADT RAL+APL++L+P W+ G+RTGDT S ERARQ Sbjct: 66 AAGTD---DSRGLRVLWLTPMRALAADTQRALEAPLSELMPGWRVGLRTGDTPSSERARQ 122 Query: 143 MKSLPQALVTTPESLSLLLSQADARQRFARLDAVIVDEWHELMGNKRGVQVQLALARLRR 202 KS P ALVTTPESLSL+LSQADA +R +D VIVDEWHELMGNKRGVQ QLALARLR Sbjct: 123 AKSPPAALVTTPESLSLMLSQADAARRLQHVDMVIVDEWHELMGNKRGVQTQLALARLRH 182 Query: 203 WRPGMVVWGLSATLGNLEQSLQALLGPAAAEQGVLVRGEQRKRIVIDTLLPPQPARFAWA 262 W+P +VVWGLSATLGNL ++ Q LLG A A QGVLV+G KR+V+DTL+PP P+RF W Sbjct: 183 WQPRLVVWGLSATLGNLPRARQVLLGDADA-QGVLVQGRLPKRVVVDTLVPPNPSRFPWG 241 Query: 263 GHLGMQMLPAVVQEIEASGSTLVFTNTRSQAELWYQNLLDARPDWAGIIALHHGSLDREV 322 GHLG++ML V+ EI+ +TLVFTNTRSQAE+WYQ LLDARPDWAG++ALHHGSLD + Sbjct: 242 GHLGIEMLQPVIDEIDRHSTTLVFTNTRSQAEIWYQKLLDARPDWAGVLALHHGSLDPAL 301 Query: 323 RDWVEHGLRDGRLKAVVCTSSLDLGVDFTPVERVLQIGSPRGVARLLQRAGRSGHSPGRS 382 R WVE GL+ GRLKAVV TSSLDLGVDF PVERVLQIGSP+GVARLLQRAGRSGH+PGR Sbjct: 302 RGWVEEGLKSGRLKAVVSTSSLDLGVDFLPVERVLQIGSPKGVARLLQRAGRSGHAPGRV 361 Query: 383 SRATLVPTNSLELVEAIAAQDAVAAGRVEQRPVPETPLDVLVQHLVTIALGGGFQADALL 442 SR TLVPT+SLEL+EA AA AVAA R+E R P+ PLDVLVQHLVT+ALGGGF+A LL Sbjct: 362 SRLTLVPTHSLELLEAAAAIRAVAARRIESRRAPDKPLDVLVQHLVTVALGGGFRASDLL 421 Query: 443 DEVRQAWSYRDLREDQWQWALDFVVRGGRSLTAYPEYHRVRQGEDGVYRVDVPAIARRHR 502 EVR+ +YR L + +WQWALDFV RGG+SL YPEY RV +DG+YRV AI RRHR Sbjct: 422 AEVRRTDAYRTLTDVEWQWALDFVARGGQSLVVYPEYRRVLPDDDGMYRVPDAAIGRRHR 481 Query: 503 MNIGTIVADASLHVQYMKGGRIGTIEEGFIARLRPGDRFLFGGRVLEFVRVHEMTAWVRR 562 M IGTIV+DA++ V+++ G R+G+IEE FIARLR GD FLFGGR LEFVR HEMTA+VR Sbjct: 482 MGIGTIVSDAAMQVRFVNGTRLGSIEESFIARLRRGDHFLFGGRRLEFVRSHEMTAFVRP 541 Query: 563 STAGSGAVPRWQGGRMPLSSTLAHAVLDRLQQAEQQHFDGPEMQAVQPLLALQHAWSALP 622 +T GAVPRWQGG+MPLSS LAHA L+RLQQA + F GPEM+A++PLL LQ WSALP Sbjct: 542 ATGRRGAVPRWQGGQMPLSSELAHAALERLQQAARDRFPGPEMRALRPLLELQARWSALP 601 Query: 623 TGERLVVEALKSREGHHLFFYPFAGRLVHMGLASLLAWRLASTRAATFSIAVNDYGFELL 682 + LV E ++SREG HLF YPFAGRLVH+GLA+LLA+R+ + + A+FSIAVNDYGFELL Sbjct: 602 AADVLVAETMRSREGQHLFLYPFAGRLVHVGLAALLAYRVGARQPASFSIAVNDYGFELL 661 Query: 683 AADQVEMARL--APQEAQDLFSEEHLLEDVLASLNATELSQRRFREIARIAGLVSQGYPG 740 +A V+ + L P+ AQ L + + LLEDVLA LNATELS+RRFREIAR+AGLV QGYPG Sbjct: 662 SATPVDWSALLATPEAAQRLLTTDALLEDVLAGLNATELSRRRFREIARVAGLVFQGYPG 721 Query: 741 QHKSARQLQASSALFFEVFRKHDAGNLLLTQAQREVLEQELELERLRSTLAELRARTMTL 800 Q +SARQLQASS+LFF+VF++HDAGNLLL QA+REVLEQELEL RLR TL L R + Sbjct: 722 QARSARQLQASSSLFFDVFQRHDAGNLLLGQAEREVLEQELELGRLRETLTALTQRRLAF 781 Query: 801 VQLERPTPFALPLMVERFREKLSTEKLADRVARMLRELEGAA 842 +L R TPF PLMVER RE LSTE L DRVAR+LRELE AA Sbjct: 782 FELRRATPFGFPLMVERLREALSTEALTDRVARLLRELERAA 823 >ref|YP_004157763.1| dead/h associated domain-containing protein [Variovorax paradoxus EPS] gb|ADU39652.1| DEAD/H associated domain protein [Variovorax paradoxus EPS] Length = 916 Score = 982 bits (2539), Expect = 0.0, Method: Composition-based stats. Identities = 529/855 (61%), Positives = 653/855 (76%), Gaps = 24/855 (2%) Query: 1 MPRNPRSSRASASACAGSAHAAQSALTAAETWFQRRGWEVFDFQRAVWQAAQQGRSGLLH 60 +P R + S G + ++AL A WF RGW F FQR VW+A +G+SG+LH Sbjct: 29 LPVEGRVPPSQPSPGRGRSKTVKAALYA---WFVARGWTPFKFQRDVWKAIAEGKSGMLH 85 Query: 61 SGTGSGKTYAVWFGALL---HAEPRLGQPDLPANAPGLRVLWITPMRALAADTLRALQAP 117 + TG+GKTYAVW GAL A +P +AP L VLW+TPMRALAADTLRAL+ P Sbjct: 86 ATTGAGKTYAVWLGALQVFSQARKETARP----SAPPLTVLWLTPMRALAADTLRALKQP 141 Query: 118 L----ADLLPHWQAGMRTGDTASGERARQMKSLPQALVTTPESLSLLLSQADARQRFARL 173 L A++ P W AG R+GDT+S ER+ Q + LP LVTTPESLSLLL++ADA R+ Sbjct: 142 LEVLGAEVHP-WSAGARSGDTSSAERSAQNERLPTVLVTTPESLSLLLARADASVVLGRV 200 Query: 174 DAVIVDEWHELMGNKRGVQVQLALARLRRWRPGMVVWGLSATLGNLEQSLQALLGPAAAE 233 V+VDEWHEL+GNKRGVQVQLALARL+RW PG+ VWG+SATLGNL++++ +LLG E Sbjct: 201 KMVVVDEWHELLGNKRGVQVQLALARLKRWNPGLAVWGMSATLGNLQEAMHSLLG---HE 257 Query: 234 QGVLVRGEQRKRIVIDTLLPPQPARFAWAGHLGMQMLPAVVQEIEASGSTLVFTNTRSQA 293 GVLV+G+ K++VID+LLP + RF W GHLG+ MLP V++EI AS +TLVFTNTRSQA Sbjct: 258 DGVLVQGQVPKKLVIDSLLPGRAERFPWGGHLGLTMLPQVIEEIAASSTTLVFTNTRSQA 317 Query: 294 ELWYQNLLDARPDWAGIIALHHGSLDREVRDWVEHGLRDGRLKAVVCTSSLDLGVDFTPV 353 E+WYQ +L+ARP+WAG IALHHGSLDR VR+WVE GL+ G LKAVVCTSSLDLGVDF PV Sbjct: 318 EIWYQAMLEARPEWAGTIALHHGSLDRAVREWVELGLKSGELKAVVCTSSLDLGVDFLPV 377 Query: 354 ERVLQIGSPRGVARLLQRAGRSGHSPGRSSRATLVPTNSLELVEAIAAQDAVAAGRVEQR 413 ERVLQIGSP+GVARLLQRAGRSGH+PGR SR TLVPT+S+E+VE AA+ A+A G +E R Sbjct: 378 ERVLQIGSPKGVARLLQRAGRSGHAPGRPSRITLVPTHSIEMVEGAAARTAIAEGHIEAR 437 Query: 414 PVPETPLDVLVQHLVTIALGGGFQADALLDEVRQAWSYRDLREDQWQWALDFVVRGGRSL 473 P+ PLDVLVQHLVT+ALGGGF D L DEVR +Y L + WQW LDFV +GG SL Sbjct: 438 HSPDQPLDVLVQHLVTVALGGGFVPDDLYDEVRGTAAYASLSRESWQWCLDFVSQGGPSL 497 Query: 474 TAYPEYHRVRQGEDGVYRVDVPAIARRHRMNIGTIVADASLHVQYMKGGRIGTIEEGFIA 533 AYP+Y RV +GV+RV +ARRHRMNIGTIV+DAS+ VQY+ G +IG++EEGF+A Sbjct: 498 AAYPDYKRVVPDAEGVWRVPDARLARRHRMNIGTIVSDASMAVQYLGGAKIGSVEEGFVA 557 Query: 534 RLRPGDRFLFGGRVLEFVRVHEMTAWVRRSTAGSGAVPRWQGGRMPLSSTLAHAVLDRLQ 593 R++PGD FLFGGR+LE VR+H+MTAWVRR+T AVPRW GGRMPLS+TLA AV+ +L Sbjct: 558 RMKPGDCFLFGGRLLELVRIHDMTAWVRRATGKRAAVPRWNGGRMPLSNTLADAVVQQLA 617 Query: 594 QAEQQHFDGPEMQAVQPLLALQHAWSALPTGERLVVEALKSREGHHLFFYPFAGRLVHMG 653 +A + H+D PE+Q V+PLL +Q WSALPT + L+ E LK+REG HLF YPFAGR VH+G Sbjct: 618 RAGEAHYDSPELQCVRPLLEIQQQWSALPTPQTLLAETLKTREGSHLFLYPFAGRHVHLG 677 Query: 654 LASLLAWRLASTRAATFSIAVNDYGFELLAADQVEMARLAPQEAQ------DLFSEEHLL 707 LASLLAWR+A A TFSIAVNDYGFELL+A +V+ L PQ + D + LL Sbjct: 678 LASLLAWRVAQHEARTFSIAVNDYGFELLSATEVDWPALLPQVLRLPEGDGDTDAHTALL 737 Query: 708 EDVLASLNATELSQRRFREIARIAGLVSQGYPGQHKSARQLQASSALFFEVFRKHDAGNL 767 +VLASLNA EL+QRRFREIAR++GL+ QGYPG+ +S+RQLQASS+LF+EVFRK+D N Sbjct: 738 HEVLASLNAGELAQRRFREIARVSGLIFQGYPGEKRSSRQLQASSSLFWEVFRKYDPSNK 797 Query: 768 LLTQAQREVLEQELELERLRSTLAELRARTMTLVQLERPTPFALPLMVERFREKLSTEKL 827 LL QA++E+L QELE+ RLR++L + + + L LERPTPF+ PLMVE FREKLS E + Sbjct: 798 LLLQAEKELLSQELEIGRLRASLERMATQQLVLKPLERPTPFSFPLMVELFREKLSNENV 857 Query: 828 ADRVARMLRELEGAA 842 ADR+ARM+ +LE AA Sbjct: 858 ADRIARMVEQLEKAA 872 >ref|ZP_07674333.1| helicase domain protein [Ralstonia sp. 5_7_47FAA] gb|EFP67449.1| helicase domain protein [Ralstonia sp. 5_7_47FAA] Length = 871 Score = 970 bits (2508), Expect = 0.0, Method: Composition-based stats. Identities = 533/823 (64%), Positives = 630/823 (76%), Gaps = 9/823 (1%) Query: 23 QSALTAAETWFQRRGWEVFDFQRAVWQAAQQGRSGLLHSGTGSGKTYAVWFGALLHAEPR 82 + AL +TWF RGW FQR VW A +G SGLLH+ TG+GKTYAVW GAL R Sbjct: 3 EPALPDLDTWFDARGWTPMPFQRTVWSAMARGESGLLHATTGAGKTYAVWLGAL----QR 58 Query: 83 LGQPDLPANAPGLRVLWITPMRALAADTLRALQAPLADLLPHWQAGMRTGDTASGERARQ 142 L Q + AP L VLW+TPMRALAADT RAL DL PHW G+RTGDT S ERA Q Sbjct: 59 LAQVRSRSGAPPLSVLWLTPMRALAADTTRALTEAAQDLAPHWTLGLRTGDTGSAERAAQ 118 Query: 143 MKSLPQALVTTPESLSLLLSQADARQRFARLDAVIVDEWHELMGNKRGVQVQLALARLRR 202 + LP ALVTTPESLSLLL++ADAR+ + V+VDEWHEL+GNKRGVQVQLALARLR Sbjct: 119 SRRLPTALVTTPESLSLLLARADAREALGSVRVVVVDEWHELVGNKRGVQVQLALARLRT 178 Query: 203 WRPGMVVWGLSATLGNLEQSLQALLGPAAAEQGVLVRGEQRKRIVIDTLLPPQPARFAWA 262 W P ++VWGLSATLGNL +++ AL A G LV+G KR+ IDTLLP RF WA Sbjct: 179 WSPELIVWGLSATLGNLSEAMDALGDAATPTPGTLVQGHLPKRMEIDTLLPDGVGRFPWA 238 Query: 263 GHLGMQMLPAVVQEIEASGSTLVFTNTRSQAELWYQNLLDARPDWAGIIALHHGSLDREV 322 GHLGM MLP V++E+E++ + LVF NTRSQAELWYQ +++ARP+WAG+IALHHGSLDR Sbjct: 239 GHLGMAMLPHVLEELESASTALVFLNTRSQAELWYQAVINARPEWAGLIALHHGSLDRAT 298 Query: 323 RDWVEHGLRDGRLKAVVCTSSLDLGVDFTPVERVLQIGSPRGVARLLQRAGRSGHSPGRS 382 RDWVE GL+ G+LKAV CTSSLDLGVDF PVERVLQIGSP+GVARLLQRAGRSGH+PGR Sbjct: 299 RDWVETGLKQGKLKAVFCTSSLDLGVDFLPVERVLQIGSPKGVARLLQRAGRSGHAPGRP 358 Query: 383 SRATLVPTNSLELVEAIAAQDAVAAGRVEQRPVPETPLDVLVQHLVTIALGGGFQADALL 442 SR T+VPT+SLELVE AA+ A +G+VE R P PLDVLVQHLVT+ALGGGF DALL Sbjct: 359 SRVTVVPTHSLELVEGAAARAAAMSGQVEARTSPHKPLDVLVQHLVTVALGGGFVPDALL 418 Query: 443 DEVRQAWSYRDLREDQWQWALDFVVRGGRSLTAYPEYHRVRQGEDGVYRVDVPAIARRHR 502 EVR+AW+YRDL +D+WQWALDFV +GG SLTAYP+Y RV E G++RV +ARRHR Sbjct: 419 QEVRRAWAYRDLHDDEWQWALDFVRQGGHSLTAYPDYRRVMPDEHGIWRVPDARLARRHR 478 Query: 503 MNIGTIVADASLHVQYMK---GGRIGTIEEGFIARLRPGDRFLFGGRVLEFVRVHEMTAW 559 M+IGTIV+DA++ V++ GG +G+IEEGFIARLRPGD FLF GR+LE VRV +MTA+ Sbjct: 479 MSIGTIVSDATMTVRWWHASGGGALGSIEEGFIARLRPGDNFLFAGRLLELVRVQDMTAY 538 Query: 560 VRRSTAGSGAVPRWQGGRMPLSSTLAHAVLDRLQQAEQQHFDGPEMQAVQPLLALQHAWS 619 VRR+T AVPRW GGRMPLS+ L+HAV+ +L A FD PEMQA +PLL LQ WS Sbjct: 539 VRRATGKRAAVPRWNGGRMPLSNELSHAVVAQLDAAAHARFDSPEMQAARPLLELQARWS 598 Query: 620 ALPTGERLVVEALKSREGHHLFFYPFAGRLVHMGLASLLAWRLASTRAATFSIAVNDYGF 679 ALPT LV E L SREG HLF YPFAGR H+GLASLL WR A+ ATFS+A NDYG Sbjct: 599 ALPTTATLVAETLHSREGWHLFLYPFAGRHAHLGLASLLGWRAANRTPATFSLAFNDYGL 658 Query: 680 ELLAADQVEMARLAPQEAQDLFSEEHLLEDVLASLNATELSQRRFREIARIAGLVSQGYP 739 ELL+A ++ L + +LF+ L+ DVLASLNA EL+QRRFREIAR++GLV QGYP Sbjct: 659 ELLSATPIDWPALLA--SGELFATHTLMPDVLASLNAGELAQRRFREIARVSGLVFQGYP 716 Query: 740 GQHKSARQLQASSALFFEVFRKHDAGNLLLTQAQREVLEQELELERLRSTLAELRARTMT 799 G HKSARQLQASS LF+EVFR+HD GNLLL+QA+ EVL QEL+L+R+ + L +R + Sbjct: 717 GAHKSARQLQASSGLFYEVFRRHDPGNLLLSQAETEVLRQELDLDRIEAALVRMRGLQLQ 776 Query: 800 LVQLERPTPFALPLMVERFREKLSTEKLADRVARMLRELEGAA 842 L L+RP+PF+ PLMVERFRE+LSTEKLADR+ARML E E AA Sbjct: 777 LCALKRPSPFSFPLMVERFREQLSTEKLADRIARMLAEAERAA 819 >ref|YP_004474141.1| DEAD/DEAH box helicase [Pseudomonas fulva 12-X] gb|AEF22047.1| DEAD/H associated domain protein [Pseudomonas fulva 12-X] Length = 859 Score = 961 bits (2484), Expect = 0.0, Method: Composition-based stats. Identities = 547/851 (64%), Positives = 649/851 (76%), Gaps = 20/851 (2%) Query: 26 LTAAETWFQRRGWEVFDFQRAVWQAAQQGRSGLLHSGTGSGKTYAVWFGALLHAEPRLGQ 85 ++ A TW QR GW+ FDFQ+ VWQA G+SGLLH+ TG+GKTYAVW AL + Sbjct: 1 MSLASTWLQRNGWKAFDFQKEVWQAVADGQSGLLHASTGAGKTYAVWLAALNRFAGKASP 60 Query: 86 PDLPAN-----APGLRVLWITPMRALAADTLRALQAPLADLLPHWQAGMRTGDTASGERA 140 P + A L VLWITPMRALAADT RALQAP+ L W GMRTGDT S ER Sbjct: 61 KKAPVSKRAPPAAPLTVLWITPMRALAADTQRALQAPVDGLELPWTVGMRTGDTGSAERQ 120 Query: 141 RQMKSLPQALVTTPESLSLLLSQADARQRFARLDAVIVDEWHELMGNKRGVQVQLALARL 200 RQ + LP ALVTTPESL+LLL+ ADA+ +FA + ++VDEWHEL+GNKRGVQ+QLALARL Sbjct: 121 RQARRLPTALVTTPESLTLLLTGADAKNQFAHVGMLVVDEWHELLGNKRGVQLQLALARL 180 Query: 201 RRWRPGMVVWGLSATLGNLEQSLQALLGPAAAEQGVLVRGEQRKRIVIDTLLPPQPARFA 260 R+W P +VVWGLSATLGN +L+ LL G LVRGEQ + +IDTLLPP RF Sbjct: 181 RQWNPQLVVWGLSATLGNQPHALEVLLPDG---NGRLVRGEQGGKPLIDTLLPPAVERFP 237 Query: 261 WAGHLGMQMLPAVVQEIEASGSTLVFTNTRSQAELWYQNLLDARPDWAGIIALHHGSLDR 320 WAGHLG+++LP VV+E++ S +LVFTNTRSQ+ELWYQ LL+ARPDWAG+IALHHGSL R Sbjct: 238 WAGHLGLRLLPQVVEELDKSSVSLVFTNTRSQSELWYQALLEARPDWAGLIALHHGSLAR 297 Query: 321 EVRDWVEHGLRDGRLKAVVCTSSLDLGVDFTPVERVLQIGSPRGVARLLQRAGRSGHSPG 380 EVRDWVE+GL+ G+LKAVVCTSSLDLGVDF PVERVLQIGS +GVARLLQRAGRSGH+PG Sbjct: 298 EVRDWVENGLKQGKLKAVVCTSSLDLGVDFLPVERVLQIGSAKGVARLLQRAGRSGHAPG 357 Query: 381 RSSRATLVPTNSLELVEAIAAQDAVAAGRVEQRPVPETPLDVLVQHLVTIALGGGFQADA 440 R+SRATLVPT+++EL+EA A QDAVAAGR+E R P PLDVLVQHLV++ALGGGF+ D Sbjct: 358 RTSRATLVPTHAVELLEAAALQDAVAAGRIEARESPHQPLDVLVQHLVSMALGGGFRPDE 417 Query: 441 LLDEVRQAWSYRDLREDQWQWALDFVVRGGRSLTAYPEYHRVRQGEDGVYRVDVPAIARR 500 LL E+R W+YRDL E QW+WAL FV +GG SL+AYP+Y RV +GV+RV P +ARR Sbjct: 418 LLHEIRSTWAYRDLDEAQWRWALAFVRQGGESLSAYPDYQRVEPDAEGVWRVPSPRLARR 477 Query: 501 HRMNIGTIVADASLHVQY----MKGGRIGTIEEGFIARLRPGDRFLFGGRVLEFVRVHEM 556 HRM++GTIV+DASL V++ GG +G++EEGFIARLRPGD FLFGGR LE VRV M Sbjct: 478 HRMSVGTIVSDASLTVKWWSKGGGGGSLGSVEEGFIARLRPGDVFLFGGRPLELVRVENM 537 Query: 557 TAWVRRSTAGSGAVPRWQGGRMPLSSTLAHAVLDRLQQAEQQHFDGPEMQAVQPLLALQH 616 TA+V+RS AG +VPRW GGRMPLS+TL+ A++ R +A Q F+GPEM+ +QPLL +Q Sbjct: 538 TAYVKRSAAGKASVPRWNGGRMPLSNTLSEALVARFGEAAQGRFEGPEMRLLQPLLEVQA 597 Query: 617 AWSALPTGERLVVEALKSREGHHLFFYPFAGRLVHMGLASLLAWRLASTRAATFSIAVND 676 WSALP+ L+ E L SREG HLF YPFAGR VH+GLASLLAWRL R +FSIAVND Sbjct: 598 NWSALPSPGTLLAETLHSREGWHLFLYPFAGRNVHLGLASLLAWRLGQRRPLSFSIAVND 657 Query: 677 YGFELLAADQVEMARLAPQEAQDLFSEEHLLEDVLASLNATELSQRRFREIARIAGLVSQ 736 YG ELL A +VE +L E LF E LL DVLASLNA EL+QRRFREIARIAGLV Sbjct: 658 YGLELLCASEVEWGQLLDGE---LFDERDLLHDVLASLNAGELAQRRFREIARIAGLVFG 714 Query: 737 GYPGQHKSARQLQASSALFFEVFRKHDAGNLLLTQAQREVLEQELELERLRSTLAELRAR 796 GYPG KS RQ+QASS LFF+VFR++D GNLLLTQA EVL QEL+++ LR TLA++RA Sbjct: 715 GYPGAGKSLRQVQASSGLFFDVFRQYDPGNLLLTQAHDEVLSQELDVQLLRHTLADMRAA 774 Query: 797 TMTLVQLERPTPFALPLMVERFREKLSTEKLADRVARMLRELEGAADKTAS-REQPL--- 852 + L L R TP A PLMVERFRE+LS+EKLADR+ARML ELE AA + PL Sbjct: 775 RLNLHALRRATPLAFPLMVERFRERLSSEKLADRIARMLGELERAAGPGPQVADAPLVEV 834 Query: 853 -PAARRKAKPR 862 PA+RR + R Sbjct: 835 EPASRRSERKR 845