BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1673.p (267 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775682.1| amino acid ABC transporter/signal transducti... 428 e-118 ref|YP_003774978.1| amino acid ABC transporter periplasmic prote... 370 e-100 ref|YP_004750929.1| ABC transporter substrate binding protein am... 355 4e-96 gb|ADU90705.1| putative amino acid transporter periplasmic ligan... 342 3e-92 ref|YP_001351726.1| ABC transporter substrate binding protein [J... 291 6e-77 >ref|YP_003775682.1| amino acid ABC transporter/signal transduction system periplasmic protein/domain-containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ63774.1| ABC-type amino acid transport/signal transduction systems, periplasmic component/domain protein [Herbaspirillum seropedicae SmR1] Length = 267 Score = 428 bits (1100), Expect = e-118, Method: Composition-based stats. Identities = 237/267 (88%), Positives = 245/267 (91%) Query: 1 MTSKHRLLALSIALGLGVLANAPAQADALADIQKAGVVRIGVPQDFAPFGSVNTDLQLQG 60 M R L++ LGL + A+ADALADIQK GVVRIGVPQDFAPFGSVNTDLQLQG Sbjct: 1 MQMSPRKTMLAVVLGLAAMQGGLARADALADIQKNGVVRIGVPQDFAPFGSVNTDLQLQG 60 Query: 61 LDIDVAKLIAQKMGVKVQLVPVASANRIAYLQTHKADLVISTLGKNAEREKVIDFSQPYA 120 LDIDVA+LIAQKMGVK+QLVPVASANRIAYLQTHKADLVISTLG+NAEREKVIDFSQPYA Sbjct: 61 LDIDVARLIAQKMGVKLQLVPVASANRIAYLQTHKADLVISTLGRNAEREKVIDFSQPYA 120 Query: 121 PYNNSVFGVASVAVSGPADLAGKTVGVARGTFQDLQLTDTAPKSATIKRYEDNNAMISAY 180 PYNNSVFGVASV VSGPADLA KTVGVARGTFQDLQLTDTAPKSATIKRYEDNNAMISAY Sbjct: 121 PYNNSVFGVASVKVSGPADLADKTVGVARGTFQDLQLTDTAPKSATIKRYEDNNAMISAY 180 Query: 181 VSGQVQLVGTGDFVAYALAEKAPNNKPVLKYIIQESACNVGLNKGETALLGKVNEVLTAA 240 VSGQVQLVGTGDFVAYALAEKAPNNKPVLKYIIQESACNVGLNKGE ALL KVNE LTAA Sbjct: 181 VSGQVQLVGTGDFVAYALAEKAPNNKPVLKYIIQESACNVGLNKGEPALLAKVNEALTAA 240 Query: 241 KKSGELNAIVQKWLNVPLPAKMASTFQ 267 KKSGELN IVQKWLNVPLPAKMA+T Q Sbjct: 241 KKSGELNGIVQKWLNVPLPAKMAATLQ 267 >ref|YP_003774978.1| amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ63070.1| ABC-type amino acid transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 265 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 194/259 (74%), Positives = 226/259 (87%) Query: 9 ALSIALGLGVLANAPAQADALADIQKAGVVRIGVPQDFAPFGSVNTDLQLQGLDIDVAKL 68 A++ +LGL +A PA AD LADIQKAGVV+IGVPQDFAP+GSV +DLQLQGLDIDVA+L Sbjct: 7 AIAASLGLMAVAVHPAMADTLADIQKAGVVKIGVPQDFAPYGSVTSDLQLQGLDIDVARL 66 Query: 69 IAQKMGVKVQLVPVASANRIAYLQTHKADLVISTLGKNAEREKVIDFSQPYAPYNNSVFG 128 +A+ MGVK +LVPV ++R+A+LQTHK DL+ISTLGKNAEREKVIDFSQ YAPYNNSVFG Sbjct: 67 VAKGMGVKAELVPVPISSRMAFLQTHKIDLIISTLGKNAEREKVIDFSQGYAPYNNSVFG 126 Query: 129 VASVAVSGPADLAGKTVGVARGTFQDLQLTDTAPKSATIKRYEDNNAMISAYVSGQVQLV 188 VA++ V+GPADLA +TVGVAR TF+DL LTD+ PKS IKRYEDNN +I+AYVSGQVQLV Sbjct: 127 VAAIKVAGPADLANQTVGVARSTFEDLMLTDSVPKSTVIKRYEDNNGLIAAYVSGQVQLV 186 Query: 189 GTGDFVAYALAEKAPNNKPVLKYIIQESACNVGLNKGETALLGKVNEVLTAAKKSGELNA 248 GTGDFVAYALAEK P NKP+LKYII S C VG+NKGE AL+ KVNE LTA+KKSGELN Sbjct: 187 GTGDFVAYALAEKTPANKPLLKYIINVSTCYVGMNKGEPALMAKVNEALTASKKSGELNG 246 Query: 249 IVQKWLNVPLPAKMASTFQ 267 IV+KWLNVPLP K+A+T+Q Sbjct: 247 IVKKWLNVPLPEKIATTYQ 265 >ref|YP_004750929.1| ABC transporter substrate binding protein amino acid [Collimonas fungivorans Ter331] gb|AEK60106.1| ABC transporter, substrate binding protein amino acid [Collimonas fungivorans Ter331] Length = 276 Score = 355 bits (911), Expect = 4e-96, Method: Composition-based stats. Identities = 194/249 (77%), Positives = 215/249 (86%) Query: 19 LANAPAQADALADIQKAGVVRIGVPQDFAPFGSVNTDLQLQGLDIDVAKLIAQKMGVKVQ 78 +A AQADALADIQK GV+RI VPQDFAPFGSV +D++LQGLDIDVA LIA+ MG+K++ Sbjct: 28 MAVQNAQADALADIQKRGVLRIAVPQDFAPFGSVTSDMKLQGLDIDVATLIAKNMGLKLE 87 Query: 79 LVPVASANRIAYLQTHKADLVISTLGKNAEREKVIDFSQPYAPYNNSVFGVASVAVSGPA 138 LVPV SANRIAYLQT KADL ISTLGKNAEREKVI FSQPY+PYNNSVFG AS+ VSGPA Sbjct: 88 LVPVTSANRIAYLQTRKADLAISTLGKNAEREKVIAFSQPYSPYNNSVFGPASLKVSGPA 147 Query: 139 DLAGKTVGVARGTFQDLQLTDTAPKSATIKRYEDNNAMISAYVSGQVQLVGTGDFVAYAL 198 DLAGKT+GVARGTFQD QLT+TAP SA IKRYEDNN MI+AY++GQVQLVGTGDFVA AL Sbjct: 148 DLAGKTIGVARGTFQDSQLTETAPPSAVIKRYEDNNGMIAAYLAGQVQLVGTGDFVAVAL 207 Query: 199 AEKAPNNKPVLKYIIQESACNVGLNKGETALLGKVNEVLTAAKKSGELNAIVQKWLNVPL 258 A KA +NKP +KYIIQESAC VGL K E AL+ KVN L+ AKKS ELNAIVQKWLNVPL Sbjct: 208 AGKAASNKPQMKYIIQESACYVGLLKEEPALMAKVNAALSQAKKSNELNAIVQKWLNVPL 267 Query: 259 PAKMASTFQ 267 P KMA F+ Sbjct: 268 PGKMAVQFE 276 >gb|ADU90705.1| putative amino acid transporter periplasmic ligand binding protein [Collimonas sp. MPS11E8] Length = 268 Score = 342 bits (878), Expect = 3e-92, Method: Composition-based stats. Identities = 186/248 (75%), Positives = 207/248 (83%) Query: 19 LANAPAQADALADIQKAGVVRIGVPQDFAPFGSVNTDLQLQGLDIDVAKLIAQKMGVKVQ 78 +A A AD+L+DIQK GV+RI VPQDFAPFGSV +L+LQGLDIDVA L+A+ MG+K+Q Sbjct: 20 IAAPAAHADSLSDIQKRGVLRIAVPQDFAPFGSVTAELKLQGLDIDVAGLVAKNMGLKLQ 79 Query: 79 LVPVASANRIAYLQTHKADLVISTLGKNAEREKVIDFSQPYAPYNNSVFGVASVAVSGPA 138 LVPV SANRIAYLQT KADLVISTLGKNAEREKVI FSQPY+PYNNSVFG ++ VSGPA Sbjct: 80 LVPVTSANRIAYLQTAKADLVISTLGKNAEREKVIAFSQPYSPYNNSVFGPTAIKVSGPA 139 Query: 139 DLAGKTVGVARGTFQDLQLTDTAPKSATIKRYEDNNAMISAYVSGQVQLVGTGDFVAYAL 198 DLAGKT+GVARGTFQD QL++TAP SATIKRYEDNN MISAY++GQVQLVGTGDFVA AL Sbjct: 140 DLAGKTIGVARGTFQDSQLSETAPPSATIKRYEDNNGMISAYLAGQVQLVGTGDFVAVAL 199 Query: 199 AEKAPNNKPVLKYIIQESACNVGLNKGETALLGKVNEVLTAAKKSGELNAIVQKWLNVPL 258 A K NKP +KYIIQESAC VGL K E AL+ VN LT AKK ELN IV KWLNVPL Sbjct: 200 AAKTTGNKPQMKYIIQESACYVGLLKEEPALMAAVNAALTKAKKDHELNTIVMKWLNVPL 259 Query: 259 PAKMASTF 266 P K+A F Sbjct: 260 PDKLARQF 267 >ref|YP_001351726.1| ABC transporter substrate binding protein [Janthinobacterium sp. Marseille] gb|ABR90168.1| ABC transporter substrate binding protein [Janthinobacterium sp. Marseille] Length = 259 Score = 291 bits (745), Expect = 6e-77, Method: Composition-based stats. Identities = 155/255 (60%), Positives = 193/255 (75%), Gaps = 3/255 (1%) Query: 11 SIALGL---GVLANAPAQADALADIQKAGVVRIGVPQDFAPFGSVNTDLQLQGLDIDVAK 67 +I +GL +L A+ADAL DIQK GV+R+ VPQDF PFGSV TD+ QGLDIDVA Sbjct: 5 TILIGLMAGALLLTNVARADALDDIQKKGVLRVAVPQDFPPFGSVTTDMTPQGLDIDVAT 64 Query: 68 LIAQKMGVKVQLVPVASANRIAYLQTHKADLVISTLGKNAEREKVIDFSQPYAPYNNSVF 127 LIA+K+GVKV+L+PV SANRI YLQT K DLVIS++GKN EREKVIDFS YAP+ N VF Sbjct: 65 LIAKKLGVKVELIPVTSANRIPYLQTKKVDLVISSMGKNPEREKVIDFSAAYAPFFNGVF 124 Query: 128 GVASVAVSGPADLAGKTVGVARGTFQDLQLTDTAPKSATIKRYEDNNAMISAYVSGQVQL 187 G A V+ PADLAGKT+GV RG+ +DL+L+ AP+SATIKRYEDNN IS+++S QVQL Sbjct: 125 GPADQKVAAPADLAGKTIGVTRGSVEDLELSKIAPESATIKRYEDNNGTISSFLSNQVQL 184 Query: 188 VGTGDFVAYALAEKAPNNKPVLKYIIQESACNVGLNKGETALLGKVNEVLTAAKKSGELN 247 V TG+ +A A+ K P KP K++I+ S C++GLNKGE LL KVN ++ AKK G LN Sbjct: 185 VATGNVIAAAIIAKNPPKKPETKFLIKNSPCSIGLNKGEEKLLEKVNAIIAQAKKDGSLN 244 Query: 248 AIVQKWLNVPLPAKM 262 + +KWL +PLPA + Sbjct: 245 TLTEKWLGLPLPASL 259