BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1669.p         (161 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774162.1| transmembrane protein [Herbaspirillum serope...   196   1e-48
ref|YP_285393.1| putative transmembrane protein [Dechloromonas a...   129   2e-28
ref|NP_522297.1| putative transmembrane protein [Ralstonia solan...   105   2e-21
ref|YP_002007670.1| hypothetical protein RALTA_B1002 [Cupriavidu...    91   7e-17
ref|YP_003748000.1| hypothetical protein RCFBP_mp20175 [Ralstoni...    77   9e-13

>ref|YP_003774162.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ62254.1| transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 144

 Score =  196 bits (497), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 94/136 (69%), Positives = 108/136 (79%)

Query: 22  ILSFLGGATAASLLFCGYLVWKPATVKIHRLAAPLQLGTKEASNGLLPVGTTLYYDTSFP 81
           IL FL G   ASL F GYLVWK    KIHRL  PLQL T++ASNG+LPVGT+LYYDTSFP
Sbjct: 5   ILFFLAGTVTASLFFYGYLVWKSNITKIHRLTTPLQLSTEQASNGMLPVGTSLYYDTSFP 64

Query: 82  EGFSRYKIYVNIDRMPLPLENLPDPTMIAPLEAAPFRHEALLKLLRNHPLTRKDLDTILS 141
           EGFSRYKIYVNIDRMPL LE L DPTMI P+EA  F  +A++  LRNHP T+ +L  I++
Sbjct: 65  EGFSRYKIYVNIDRMPLELETLQDPTMIDPVEATAFSQDAVVNRLRNHPFTKDELRAIIN 124

Query: 142 TGYLSKDEIKEVLSEF 157
           +GYLSKD+IKEVLSEF
Sbjct: 125 SGYLSKDDIKEVLSEF 140


>ref|YP_285393.1| putative transmembrane protein [Dechloromonas aromatica RCB]
 gb|AAZ46923.1| putative transmembrane protein [Dechloromonas aromatica RCB]
          Length = 146

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 67/137 (48%), Positives = 94/137 (68%), Gaps = 6/137 (4%)

Query: 28  GATAASLLFC----GYLVWKPATVKIHRLAAPLQLGTKEASNG--LLPVGTTLYYDTSFP 81
           GA+A + + C     +        KIH+L  PL L ++ AS    +LP GT LY+D S+P
Sbjct: 9   GASAITFILCLSVNHFAPEHKTMTKIHKLEYPLILSSESASKNTHMLPKGTVLYFDKSYP 68

Query: 82  EGFSRYKIYVNIDRMPLPLENLPDPTMIAPLEAAPFRHEALLKLLRNHPLTRKDLDTILS 141
           EGF+RYKIY+NIDRMPL L++L DPT I P++A     E LLKLLR++PLT+ DL++IL+
Sbjct: 69  EGFTRYKIYINIDRMPLKLDDLSDPTEIDPIDAVAPSKEDLLKLLRDYPLTKSDLESILN 128

Query: 142 TGYLSKDEIKEVLSEFV 158
           +  +SKDEI+E+L  F+
Sbjct: 129 SKRISKDEIREILDNFI 145


>ref|NP_522297.1| putative transmembrane protein [Ralstonia solanacearum GMI1000]
 emb|CAD17887.1| putative transmembrane protein [Ralstonia solanacearum GMI1000]
          Length = 144

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 57/142 (40%), Positives = 88/142 (61%), Gaps = 5/142 (3%)

Query: 18  IPGTILSFLGGATAASLLFCGYLVWKPATVKIHRLAAPLQL--GTKEASNGLLPVGTTLY 75
           +P    + +G A   S     Y++ K    ++H+L  PL L  GT  +   +LP GT+LY
Sbjct: 4   LPTVACALIGIAIGGS---GSYVLEKMKMPRVHKLQFPLALSGGTSNSPTSILPKGTSLY 60

Query: 76  YDTSFPEGFSRYKIYVNIDRMPLPLENLPDPTMIAPLEAAPFRHEALLKLLRNHPLTRKD 135
           YD +FPEGF RYKIYVN++ + L  + + +   I PL A PF  ++L KL+ ++PLT+ D
Sbjct: 61  YDQAFPEGFVRYKIYVNVEGVKLESQEVTEKFWIDPLTAFPFDKDSLQKLILDYPLTKDD 120

Query: 136 LDTILSTGYLSKDEIKEVLSEF 157
           L  IL +G +SK +I+++L+EF
Sbjct: 121 LAAILRSGTISKQDIRDLLTEF 142


>ref|YP_002007670.1| hypothetical protein RALTA_B1002 [Cupriavidus taiwanensis LMG
           19424]
 emb|CAQ71613.1| conserved hypothetical protein; PUTATIVE MEMBRANE anchored protein
           [Cupriavidus taiwanensis LMG 19424]
          Length = 145

 Score = 90.9 bits (224), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 49/138 (35%), Positives = 83/138 (60%), Gaps = 4/138 (2%)

Query: 22  ILSFLGGATAASLLFCGYLVWKPATVKIHRLAAPLQL--GTKEASNGLLPVGTTLYYDTS 79
           I+S L GA   +++   + + +  T K+H+L  PL L  G  ++   +LP GT+LY D +
Sbjct: 8   IVSALLGAIVGAIVV--HQLAREETPKVHKLQYPLMLTGGNSDSPAAILPPGTSLYLDRT 65

Query: 80  FPEGFSRYKIYVNIDRMPLPLENLPDPTMIAPLEAAPFRHEALLKLLRNHPLTRKDLDTI 139
           FPEGF RYK+Y+N++   L   ++ +   + PL A PF  ++L  LL+  PL + D   +
Sbjct: 66  FPEGFVRYKVYINVEGTKLEPRDVTEEFWLDPLTATPFDKDSLHALLKRFPLGKDDFSAV 125

Query: 140 LSTGYLSKDEIKEVLSEF 157
           L +G L+K+EI+++L  +
Sbjct: 126 LGSGQLTKEEIRDLLRAY 143


>ref|YP_003748000.1| hypothetical protein RCFBP_mp20175 [Ralstonia solanacearum
           CFBP2957]
 emb|CBJ53602.1| protein of unknown function [Ralstonia solanacearum CFBP2957]
          Length = 119

 Score = 77.0 bits (188), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 40/98 (40%), Positives = 57/98 (58%), Gaps = 6/98 (6%)

Query: 39  YLVWKPATVKIHRLAAPLQL--GTKEASNGLLPVGTTLYYDTSFPEGFSRYKIYVNIDRM 96
           Y+V +  T + H+L  PL L  GT +   G+LP GT+LYYD +FPEGF RY++YVN++ +
Sbjct: 22  YVVQQAKTPRAHKLQFPLALSGGTVDRPAGILPKGTSLYYDQAFPEGFVRYRVYVNVEGV 81

Query: 97  PLPLENLPDPTMIAPLEAAPFR----HEALLKLLRNHP 130
            L  + + DP  I PL A P      H+     +  HP
Sbjct: 82  KLEAQEVTDPVWIDPLAAFPLERGELHQPARATIEAHP 119