BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1666.p (371 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775679.1| nuclease subunit of the excinuclease complex... 499 e-139 ref|YP_004115499.1| excinuclease ABC subunit C domain-containing... 211 1e-52 ref|YP_003930762.1| UvrABC system protein C [Pantoea vagans C9-1... 211 2e-52 ref|YP_003741245.1| Excinuclease cho [Erwinia billingiae Eb661] ... 209 9e-52 dbj|BAI55142.1| excinuclease [Escherichia coli SE15] 206 5e-51 >ref|YP_003775679.1| nuclease subunit of the excinuclease complex protein [Herbaspirillum seropedicae SmR1] gb|ADJ63771.1| nuclease subunit of the excinuclease complex protein [Herbaspirillum seropedicae SmR1] Length = 317 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 260/314 (82%), Positives = 282/314 (89%), Gaps = 6/314 (1%) Query: 62 QEGQRGLRH------AGLPRATFNAPQPAAHRAATFSYPLHIDRASIEALPAACGVYILR 115 QEG+ GL GLP ATFNAPQPAAHRAATFSYPLHIDRASIEALP+ACGVYILR Sbjct: 2 QEGEHGLPALPSFPPRGLPLATFNAPQPAAHRAATFSYPLHIDRASIEALPSACGVYILR 61 Query: 116 GVNDQALYVGRSVNLRSRVMAHLHNHEEQFLIGQTRRIECRRTAGELGAALLESSLLRDL 175 G DQALYVGRSVNLRSRV+AHLH+ E+QFLIG+TRRIEC RTAGELGAALLE+SLLRDL Sbjct: 62 GEGDQALYVGRSVNLRSRVLAHLHHAEDQFLIGRTRRIECLRTAGELGAALLENSLLRDL 121 Query: 176 RPAHNKKQRTKRGLFTLRLNDAGQPQVAQVEEREFSRAENLFGIYTSERAAQEALQKMVE 235 RPAHNKKQR KRGLFTLRL++ GQP VAQV + EF+RA LFG+YTSERAAQEAL K+VE Sbjct: 122 RPAHNKKQRAKRGLFTLRLDEQGQPLVAQVADHEFNRAGKLFGLYTSERAAQEALHKLVE 181 Query: 236 RHGLCSIATGLEQPDGIGMACFGRQIRRCRGACTGEETHEQHQQRLMQALEDLRILPWPY 295 HGLCSIATGLEQ +G GMACFGRQIRRCRGACTGEE+HEQHQ RL+QALEDLRILPWPY Sbjct: 182 HHGLCSIATGLEQGEGPGMACFGRQIRRCRGACTGEESHEQHQSRLLQALEDLRILPWPY 241 Query: 296 AGPMALVEQGDGWQQVHVIDHWRYLGSLDRDNRQLASRPAASLKGFDLDSYKLMIQPYLL 355 AGPM +VEQGDGWQQ+HVID WRYLGSLDR R+L +RPAASLKGFDLD+YKL+IQPYLL Sbjct: 242 AGPMGIVEQGDGWQQIHVIDQWRYLGSLDRQQRRLPARPAASLKGFDLDTYKLVIQPYLL 301 Query: 356 GQLELRPLPGLPLA 369 GQLELRPLPGLPLA Sbjct: 302 GQLELRPLPGLPLA 315 >ref|YP_004115499.1| excinuclease ABC subunit C domain-containing protein [Pantoea sp. At-9b] gb|ADU68943.1| Excinuclease ABC C subunit domain protein [Pantoea sp. At-9b] Length = 286 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 122/279 (43%), Positives = 169/279 (60%), Gaps = 10/279 (3%) Query: 88 AATFSYPLHIDRASIEALPAACGVYILRGVNDQ-ALYVGRSVNLRSRVMAHLHNHEEQFL 146 AA + YP H+ R +E LP GVY+ G +D LY+G+SVNLRSRVM+H +E + Sbjct: 15 AAIYQYPEHL-RQWLEGLPNQPGVYVFHGESDNLPLYIGKSVNLRSRVMSHFRTPDEASM 73 Query: 147 IGQTRRIECRRTAGELGAALLESSLLRDLRPAHNKKQRTKRGLFTLRLNDAGQPQVAQVE 206 + Q RRI TAG+LGA LLE+ +++ +P NK+ R R L +L+LND PQV Sbjct: 74 LRQARRISWIPTAGDLGAQLLEAQMIKTQQPLFNKRLRKNRQLCSLQLNDT-VPQVVYAR 132 Query: 207 EREFSRAENLFGIYTSERAAQEALQKMVERHGLCSIATGLEQPDGIGMACFGRQIRRCRG 266 + +FSR NL+G++ S AA E L+ + + LC GLE G CF ++RC G Sbjct: 133 DLDFSRTANLYGLFRSRHAALEKLKSIADEQRLCHGLLGLENLRS-GRGCFRAALKRCAG 191 Query: 267 ACTGEETHEQHQQRLMQALEDLRILPWPYAGPMALVEQGDGWQQVHVIDHWRYLGSL--D 324 AC G E E HQQRL QAL+ LR++ WP++G + +VE+G Q+HVIDHW +LGS+ + Sbjct: 192 ACCGNEPPEAHQQRLQQALDALRVVCWPWSGAVGMVERGATMTQIHVIDHWFWLGSVSSE 251 Query: 325 RDNRQLASRPAASLKGFDLDSYKLMIQPYLLGQLELRPL 363 + RQL P GFD D YK++ +P L G+ L L Sbjct: 252 AEARQLRRNP----HGFDHDGYKILCRPLLSGEFPLIAL 286 >ref|YP_003930762.1| UvrABC system protein C [Pantoea vagans C9-1] gb|ADO09313.1| UvrABC system protein C [Pantoea vagans C9-1] Length = 286 Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 121/291 (41%), Positives = 174/291 (59%), Gaps = 10/291 (3%) Query: 75 RATFNAPQPAAHRAATFSYPLHIDRASIEALPAACGVYILRGVNDQ-ALYVGRSVNLRSR 133 RA P+P A+ + YP H+ R +E LP GVY G ++ LY+G+SVNLRSR Sbjct: 4 RAAILRPEPDAN--TIYQYPEHL-REWLEGLPNHPGVYTFHGESESLPLYIGKSVNLRSR 60 Query: 134 VMAHLHNHEEQFLIGQTRRIECRRTAGELGAALLESSLLRDLRPAHNKKQRTKRGLFTLR 193 VM+H +E ++ Q+RR+ TAG+LGA LLE+ +++ +P NK+ R R L +L+ Sbjct: 61 VMSHFRTPDEAKMLRQSRRVSWIPTAGDLGALLLEAQMIKTQQPLFNKRLRKNRQLCSLQ 120 Query: 194 LNDAGQPQVAQVEEREFSRAENLFGIYTSERAAQEALQKMVERHGLCSIATGLEQPDGIG 253 + D G+P V ++ +FS++ NLFG+Y S AA E L+++ + LC GLE G Sbjct: 121 ITD-GKPNVVYAKDLDFSQSPNLFGLYRSRFAALERLKQLANEYQLCHGLLGLEALSA-G 178 Query: 254 MACFGRQIRRCRGACTGEETHEQHQQRLMQALEDLRILPWPYAGPMALVEQGDGWQQVHV 313 CF +RRC GAC G+E HQ RL++ALE++R+ WP+ G + LVE+G Q+HV Sbjct: 179 RGCFRSALRRCAGACCGKEPVSDHQDRLLEALENVRVFCWPWQGAVGLVEEGKEMTQIHV 238 Query: 314 IDHWRYLGSLDR-DNRQLASRPAASLKGFDLDSYKLMIQPYLLGQLELRPL 363 IDHW YLGS+ D + RP GFD D YK++ +P L G + PL Sbjct: 239 IDHWFYLGSVSSMDEARKLQRPKG---GFDHDGYKILCRPILSGAYPILPL 286 >ref|YP_003741245.1| Excinuclease cho [Erwinia billingiae Eb661] emb|CAX59395.1| Excinuclease cho [Erwinia billingiae Eb661] Length = 287 Score = 209 bits (531), Expect = 9e-52, Method: Composition-based stats. Identities = 121/290 (41%), Positives = 180/290 (62%), Gaps = 13/290 (4%) Query: 82 QPAAHR-----AATFSYPLHIDRASIEALPAACGVYILRGVND-QALYVGRSVNLRSRVM 135 + A+HR AA + YP H+ R +E LP+ GVY+ G ++ LY+G+SVNLRSRVM Sbjct: 4 RAASHRLEFEPAAIYQYPDHL-RPYLEGLPSLPGVYVFHGESETMPLYIGKSVNLRSRVM 62 Query: 136 AHLHNHEEQFLIGQTRRIECRRTAGELGAALLESSLLRDLRPAHNKKQRTKRGLFTLRLN 195 +H +E ++ Q +R+ TAGELGA LLE+ +++ +P NK+ R R L +L + Sbjct: 63 SHFRTADEAKMLRQAKRVTFIPTAGELGALLLEAQMIKVQQPLFNKRLRKNRQLCSLHM- 121 Query: 196 DAGQ-PQVAQVEEREFSRAENLFGIYTSERAAQEALQKMVERHGLCSIATGLEQPDGIGM 254 AG+ P V ++ +FS +LFG+Y S AA E LQK+ + LC GLE+ G Sbjct: 122 -AGEKPTVVYAKDLDFSHTPDLFGLYASRHAALEKLQKIADEQRLCLGVLGLEKLSK-GR 179 Query: 255 ACFGRQIRRCRGACTGEETHEQHQQRLMQALEDLRILPWPYAGPMALVEQGDGWQQVHVI 314 ACF + RC GAC G+E+ ++HQQRL+ ALE +R+ WP+ G + +VEQG QQ+H+I Sbjct: 180 ACFRASLGRCAGACCGKESLDEHQQRLIAALERVRVQCWPWQGAVGVVEQGINHQQIHII 239 Query: 315 DHWRYLGSLDRDNRQLASRPAASLKGFDLDSYKLMIQPYLLGQLELRPLP 364 ++W YLGS+ ++ AS + +GFD D YK++ +P L G+ + PLP Sbjct: 240 NNWFYLGSV--EDLAQASELTTTPQGFDSDGYKILCKPILSGKFPILPLP 287 >dbj|BAI55142.1| excinuclease [Escherichia coli SE15] Length = 295 Score = 206 bits (524), Expect = 5e-51, Method: Composition-based stats. Identities = 125/299 (41%), Positives = 180/299 (60%), Gaps = 17/299 (5%) Query: 68 LRHAGLPRATFNAPQPAAHRAATFSYPLHIDRASIEALPAACGVYILRGVND-QALYVGR 126 +R PR F A AA + YP H+ R+ + LP GVY+ G +D LY+G+ Sbjct: 2 VRRLTSPRLEFEA-------AAIYEYPEHL-RSFLNDLPTRPGVYLFHGESDTMPLYIGK 53 Query: 127 SVNLRSRVMAHLHNHEEQFLIGQTRRIECRRTAGELGAALLESSLLRDLRPAHNKKQRTK 186 SVN+RSRV++HL +E ++ Q+RRI TAGE+GA LLE+ L+++ +P NK+ R Sbjct: 54 SVNIRSRVLSHLRTPDEAAMLRQSRRISWICTAGEIGALLLEARLIKEQQPLFNKRLRRN 113 Query: 187 RGLFTLRLNDAGQPQVAQVEEREFSRAENLFGIYTSERAAQEALQKMVERHGLCSIATGL 246 R L L+LN+ + V +E +FSRA NLFG++ + RAA +ALQ + + LC GL Sbjct: 114 RQLCALQLNEK-RVDVVYAKEVDFSRASNLFGLFANRRAALQALQTIADEQKLCYGLLGL 172 Query: 247 EQPDGIGMACFGRQIRRCRGACTGEETHEQHQQRLMQALEDLRILPWPYAGPMALVEQGD 306 E P G ACF ++RC GAC G+E+HE+H RL QALE LR++ WP+ G +AL EQ Sbjct: 173 E-PLSRGRACFRSALKRCAGACCGKESHEEHALRLRQALERLRVVCWPWQGAVALKEQHP 231 Query: 307 GWQQVHVIDHWRYLGSLD--RDNRQLASRPAASLKGFDLDSYKLMIQPYLLGQLELRPL 363 Q H+I +W +LG+++ ++ L PA GFD D YK++ +P L G E+ L Sbjct: 232 EMTQYHIIQNWLWLGAVNSLKEATTLIRAPA----GFDHDGYKILCKPLLSGNYEITEL 286