BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1665.p (857 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775678.1| ATP-dependent DNA ligase [Herbaspirillum ser... 1338 0.0 ref|YP_003052338.1| DNA ligase D [Methylovorus glucosetrophus SI... 900 0.0 ref|ZP_08137910.1| ATP-dependent DNA ligase [Pseudomonas sp. TJI... 750 0.0 ref|YP_347829.1| ATP-dependent DNA ligase [Pseudomonas fluoresce... 725 0.0 ref|ZP_03399463.1| DNA ligase, ATP-dependent [Pseudomonas syring... 716 0.0 >ref|YP_003775678.1| ATP-dependent DNA ligase [Herbaspirillum seropedicae SmR1] gb|ADJ63770.1| ATP-dependent DNA ligase protein [Herbaspirillum seropedicae SmR1] Length = 856 Score = 1338 bits (3463), Expect = 0.0, Method: Composition-based stats. Identities = 686/856 (80%), Positives = 752/856 (87%), Gaps = 7/856 (0%) Query: 4 SSSALDRYHAKRDFSITPEPSGHAQSARRQGKQASPEGLQFFIQRHHARRLHYDFRLELD 63 S+ LDRY AKRDF+ITPEPSGHA S R G Q+ + LQFFIQRHHARRLHYDFRLELD Sbjct: 2 STGKLDRYRAKRDFTITPEPSGHA-SRSRAGAQS--QSLQFFIQRHHARRLHYDFRLELD 58 Query: 64 GVLKSWAVPKGPSLDPHDKRLAVRVEDHPFDYGTFEGDIPAHQYGAGHVVLWDRGQWQPH 123 GVLKSWAVPKGPSLDPHDKRLAVRVEDHPFDYG+FEGDIPAHQYGAGHVVLWDRGQW+PH Sbjct: 59 GVLKSWAVPKGPSLDPHDKRLAVRVEDHPFDYGSFEGDIPAHQYGAGHVVLWDRGQWRPH 118 Query: 124 GDPQAGLRKGHLSFLLTGEKLQGRWALVRMGKPAEDGKENWLLIKEEDDAARNGAAAAIT 183 GD +AGL KGHLSF L GEKL GRWALVRMGKPA DGKENWLLIK++D AA +G AAIT Sbjct: 119 GDARAGLAKGHLSFELEGEKLHGRWALVRMGKPAADGKENWLLIKDDDAAAASGEQAAIT 178 Query: 184 DLRPESVKDLGDTP--SAGKAIAPSPVQSMSDMPERMEAQLATLADTAPQGEEWLSELKF 241 +LRPESVKDLGD + +A A + S MP +M+AQLATL D AP GE+WL ELKF Sbjct: 179 ELRPESVKDLGDQAPLAKARASAKAAPDSTGPMPAQMQAQLATLVDRAPAGEQWLCELKF 238 Query: 242 DGYRGLCRIENGRAAIHTREGLDWSHRWPILVEALAKLPVDQAWIDGEVVALDADGRVSF 301 DGYRGLCRI++G+AAI+TREGLDWSHRWPILV+ALA+LPVD+AWIDGEVVALDA G++SF Sbjct: 239 DGYRGLCRIDHGQAAIYTREGLDWSHRWPILVQALARLPVDEAWIDGEVVALDAQGQISF 298 Query: 302 EALQNLVRGDRQQANGIRLALYAFDLLYLNGHDVRELPLHQRKELLREVIPGGDEQGLLL 361 EALQNL RGDRQQA+GIRLALYAFDLLYLNGHD+R++PL QRK LLRE+IPG D +GLLL Sbjct: 299 EALQNLARGDRQQADGIRLALYAFDLLYLNGHDLRDIPLRQRKALLRELIPGSDPEGLLL 358 Query: 362 YSEHIAGHADEVFRHACQHGMEGIVVKRADAPYSGRRDRNWIKVKCEHRQEFVIAGYTEP 421 YSEHI GHA EVFRHACQHGMEGIV+KRADAPY+GRRDR W+K+KCEHRQEFVIAGYTEP Sbjct: 359 YSEHIEGHAAEVFRHACQHGMEGIVLKRADAPYTGRRDRYWLKLKCEHRQEFVIAGYTEP 418 Query: 422 AGQRSGFGAILVGVHDEQGQLQYAGRVGTGFDERLLGSMLKQFRQREQEQPAFVNPPTGQ 481 AGQRSGFGAILVGV+DE QL+YAGRVGTGFD++LL ++LKQF EQ+QPAF NPPTGQ Sbjct: 419 AGQRSGFGAILVGVYDEHEQLRYAGRVGTGFDDKLLETLLKQFGPLEQDQPAFANPPTGQ 478 Query: 482 QRRGVHWLKPELVAEVKFAQWTKSGILRHGSFVALREDKAPEEIVRETPGSASDEVHPEN 541 QRRGVHWL+P LVAEV+FAQWT +GILRHGSFVALREDK P +I RE P ++ Sbjct: 479 QRRGVHWLRPALVAEVRFAQWTSAGILRHGSFVALREDKDPHQIRREGPQPLAEAKADAK 538 Query: 542 AEAKPKAPARRSAQDLSRPVTVEGVKLTHPGKILFPDTGLTKLELARYYQSVAPWILPEL 601 A A A +R A DLS PVTV GVKLTHPGKILFPDTGLTKLELARYYQSVAPWILPEL Sbjct: 539 APAAAPARSRGKASDLSAPVTVAGVKLTHPGKILFPDTGLTKLELARYYQSVAPWILPEL 598 Query: 602 KQRPLSLVRCPDGHAGKCFFQKHTGQGMPDAIETIEVPEGEGKARYMMVNDVAGLVATVQ 661 +QRPLSLVRCPDGHAGK FFQKHTGQGMP+AI+TIEVPEGEG A+YMMVNDVAGLVATVQ Sbjct: 599 RQRPLSLVRCPDGHAGKRFFQKHTGQGMPEAIDTIEVPEGEGHAQYMMVNDVAGLVATVQ 658 Query: 662 MGVLELHAWGATGRALDKPDRVVFDLDPAPDVPWDTVVEGAQLVRGLLEELGLSCLLKTS 721 MGVLELHAWGATG AL+ PDRVVFDLDPA DVPW TVVEGAQLVRGLL+E+GL C LKTS Sbjct: 659 MGVLELHAWGATGAALNHPDRVVFDLDPADDVPWATVVEGAQLVRGLLKEIGLDCFLKTS 718 Query: 722 GGKGLHVMVPIRPEHDWDVIKDWAHRLAAHLARLLPDRFIARMSKSARTGKIFIDYLRNA 781 GGKGLHVMVPIRPEHDW V+KDWAHR AAHLAR LPDRFIA+MSK+AR GKIFIDYLRNA Sbjct: 719 GGKGLHVMVPIRPEHDWAVVKDWAHRFAAHLARHLPDRFIAKMSKAARNGKIFIDYLRNA 778 Query: 782 PGATTVVAYSVRARDGAPVSVPITWEELEQ--GVQADHFRVSTMRKRLESLSHSDPWADF 839 PGATTVVAYSVRARDGAPVSVPITWEELEQ G++ADHFRVSTM R+ SL DPWA F Sbjct: 779 PGATTVVAYSVRARDGAPVSVPITWEELEQGKGIKADHFRVSTMPARIRSLEQHDPWAHF 838 Query: 840 NKSPQRLTRAMLDAFD 855 ++PQRLT+AML AFD Sbjct: 839 GQAPQRLTKAMLAAFD 854 >ref|YP_003052338.1| DNA ligase D [Methylovorus glucosetrophus SIP3-4] gb|ACT51811.1| DNA ligase D [Methylovorus glucosetrophus SIP3-4] Length = 870 Score = 900 bits (2327), Expect = 0.0, Method: Composition-based stats. Identities = 465/883 (52%), Positives = 594/883 (67%), Gaps = 50/883 (5%) Query: 7 ALDRYHAKRDFSITPEPSGHAQSARRQGKQASPEGLQFFIQRHHARRLHYDFRLELDGVL 66 L+ Y KR+F+ITPEPSG A + L F+IQRHHARRLHYDFRLELDGVL Sbjct: 2 GLNHYWQKRNFNITPEPSGQVAEA--------GDTLAFYIQRHHARRLHYDFRLELDGVL 53 Query: 67 KSWAVPKGPSLDPHDKRLAVRVEDHPFDYGTFEGDIPAHQYGAGHVVLWDRGQWQPHGDP 126 KSWA+PKGP+LDP +KRLAV VEDHP +YG FEG IP HQYGAG V+LWD G W+P DP Sbjct: 54 KSWAIPKGPTLDPKEKRLAVHVEDHPLEYGHFEGQIPEHQYGAGKVILWDCGTWEPLEDP 113 Query: 127 QAGLRKGHLSFLLTGEKLQGRWALVRMGKPAEDG---KENWLLIKEEDDAARNGAAAAIT 183 G +KG L F+L GEKL G+WALVRMGK +G KENWLLIKE+DD A++G A IT Sbjct: 114 HVGYQKGALKFMLHGEKLSGKWALVRMGKTPAEGSSEKENWLLIKEKDDVAQSGEQANIT 173 Query: 184 DLRPESVKDL--GDT----PSAGKAIAPSPVQSMSD----------------------MP 215 + RPES++ L GDT S+ KA S ++S MP Sbjct: 174 ENRPESIRRLFSGDTHRPLKSSDKARRVSVASTLSSRQSAGAHHASPDLDGEVGKTQPMP 233 Query: 216 ERMEAQLATLADTAPQGEEWLSELKFDGYRGLCRIENGRAAIHTREGLDWSHRWPILVEA 275 M+ QLA LA AP GE WL+E+KFDGYR L R E+G +++R G DW+ +W + +A Sbjct: 234 TTMQPQLALLAKKAPVGEHWLTEVKFDGYRMLARCEDGEVKLYSRNGHDWTAKWKGIADA 293 Query: 276 LAKLPVDQAWIDGEVVALDADGRVSFEALQNLVRGDRQQANGIRLALYAFDLLYLNGHDV 335 L +LP+DQAW+DGE+VAL +G++SF+ALQ+ + Q N LA + FDL+YLNGHD+ Sbjct: 294 LKQLPIDQAWLDGELVALQPNGKISFQALQDAM----QANNAATLAYFVFDLMYLNGHDL 349 Query: 336 RELPLHQRKELLREVI--PGGDEQGL--LLYSEHIAGHADEVFRHACQHGMEGIVVKRAD 391 R PL +RK LL+ V+ D Q L +S+HI G+A EVF HAC H +EGI+ KRA+ Sbjct: 350 RSQPLIKRKALLKTVLQRAADDSQAPSPLHFSDHIVGNAPEVFDHACLHDLEGIIAKRAE 409 Query: 392 APYSGRRDRNWIKVKCEHRQEFVIAGYTEPAGQRSGFGAILVGVHDEQGQLQYAGRVGTG 451 +PY RR +W+K+KC RQEFVI GYT+PAG R GFGA+L+GV+D +G L YAGRVGTG Sbjct: 410 SPYQPRRTEDWLKIKCGLRQEFVIGGYTDPAGSRQGFGALLLGVYDAEGALHYAGRVGTG 469 Query: 452 FDERLLGSMLKQFRQREQEQPAFVNPPTGQQRRGVHWLKPELVAEVKFAQWTKSGILRHG 511 F E L + KQF + ++ F TG Q RGVHWL P+LVAEV+FAQWT S I+RH Sbjct: 470 FTETTLAQVSKQFSRLQRASSPFTGKLTGLQMRGVHWLTPKLVAEVRFAQWTDSQIVRHA 529 Query: 512 SFVALREDKAPEEIVRETPGSASDEVHPENAEAKPKAPARRSAQDLSRPVTVEGVKLTHP 571 +FV LR+DK EIV ETP + E+A + P+ ++ Q + GV+LTHP Sbjct: 530 AFVGLRQDKPAREIVHETPANPPPPT--EDAASSPEQSGQQRPQRSGSVREIAGVRLTHP 587 Query: 572 GKILFPDTGLTKLELARYYQSVAPWILPELKQRPLSLVRCPDGHAGKCFFQKHTGQGMPD 631 GKILF GLTK +LA YY+ +APWILP+L+ RPLSLVRCP G +CFFQKH +PD Sbjct: 588 GKILFAQAGLTKQDLAHYYEEIAPWILPQLQGRPLSLVRCPTGAGQQCFFQKHAAMTIPD 647 Query: 632 AIETIEVPEGEGKARYMMVNDVAGLVATVQMGVLELHAWGATGRALDKPDRVVFDLDPAP 691 + I+VP YM+V+D+ L+ VQMGVLE+H WG+ L++PDR++FDLDP Sbjct: 648 NVRRIQVPVSGFSDDYMVVDDLPALICLVQMGVLEIHTWGSREENLEQPDRIIFDLDPDE 707 Query: 692 DVPWDTVVEGAQLVRGLLEELGLSCLLKTSGGKGLHVMVPIRPEHDWDVIKDWAHRLAAH 751 +PW TVVE AQLV LL+ LGL +KT+GGKG+HV++PI PEH W IK ++ A + Sbjct: 708 ALPWTTVVESAQLVHALLQALGLESFVKTTGGKGVHVVIPIVPEHSWQTIKAFSKSAAQY 767 Query: 752 LARLLPDRFIARMSKSARTGKIFIDYLRNAPGATTVVAYSVRARDGAPVSVPITWEELEQ 811 L + LPDRF + MSK RTGK+FIDYLRNAPGAT + AYS RA+ A VSVPI+WEEL Sbjct: 768 LEKQLPDRFTSNMSKEKRTGKVFIDYLRNAPGATAIAAYSSRAKPSATVSVPISWEELNM 827 Query: 812 GVQADHFRVSTMRKRLESLSHSDPWADFNKSPQRLTRAMLDAF 854 GV++D F ++ + +RL + DPW D+ + Q +T AML+ F Sbjct: 828 GVRSDSFTIANLPERL-ARQKQDPWQDYERLRQHITTAMLEMF 869 >ref|ZP_08137910.1| ATP-dependent DNA ligase [Pseudomonas sp. TJI-51] gb|EGC00823.1| ATP-dependent DNA ligase [Pseudomonas sp. TJI-51] Length = 928 Score = 750 bits (1936), Expect = 0.0, Method: Composition-based stats. Identities = 390/865 (45%), Positives = 540/865 (62%), Gaps = 40/865 (4%) Query: 2 SRSSSALDRYHAKRDFSITPEPSGHAQSARRQGKQASPEGLQFFIQRHHARRLHYDFRLE 61 S L++Y+ RDF+ +PEPSG ++ ARR GK+ P+ LQF +Q+H A RLHYDFRLE Sbjct: 78 SDKVQGLEKYNQMRDFAASPEPSGSSKPARR-GKRTEPQALQFCVQKHDATRLHYDFRLE 136 Query: 62 LDGVLKSWAVPKGPSLDPHDKRLAVRVEDHPFDYGTFEGDIPAHQYGAGHVVLWDRGQWQ 121 L+G LKSWA+PKGP DP KRL+V VEDHP DY +FEG IP YGAG V++WDRG W Sbjct: 137 LNGTLKSWAIPKGPCFDPKVKRLSVHVEDHPLDYASFEGTIPKGHYGAGEVIVWDRGIWI 196 Query: 122 PHGDPQAGLRKGHLSFLLTGEKLQGRWALVRMGKPAEDGKENWLLIKEEDDAARNGAAAA 181 P GDP RKG L F L GEKL G W LVR E +E W LIK +D++AR A Sbjct: 197 PQGDPDEAYRKGRLKFELQGEKLSGLWNLVRTN--IEGKQEQWFLIKHQDESARPIADYD 254 Query: 182 ITDLRPESV--------KDLGDTPSAGKAIAPSPVQSM-------SDMPERMEAQLATLA 226 + +P SV K G S+ + +P + + +D+PE++ QLATL Sbjct: 255 VVSEQPNSVLSDRTVIPKKRGKPKSSTPSESPDKAEPLRTAHAVPADLPEKLAPQLATLV 314 Query: 227 DTAPQGEEWLSELKFDGYRGLCRIENGRAAIHTREGLDWSHRWPILVEALAKLPVDQAWI 286 +++PQG EW E+KFDGYR LCR+E + TR G DW+ + A+ +L ++ AW+ Sbjct: 315 ESSPQGNEWRFEIKFDGYRMLCRVEGDEVRLFTRNGHDWTDKLSKQAAAIKELGLESAWL 374 Query: 287 DGEVVALDADGRVSFEALQNLVRGDRQQANGIRLALYAFDLLYLNGHDVRELPLHQRKEL 346 DGE+V +A+G F+ LQN + Q + Y FDL YLNG D+R +P+ QR+ Sbjct: 375 DGEIVVPNAEGVPDFQLLQNAFDAGKSQG----IIYYLFDLPYLNGADLRLVPVEQRRAA 430 Query: 347 LREVIPGGDEQGLLLYSEHIAGHADEVFRHACQHGMEGIVVKRADAPYSGRRDRNWIKVK 406 L++V+ +E LL +S+ D + ACQ MEG++ KR+ +PY RR +WIK+K Sbjct: 431 LKQVMES-NEHPLLRFSDDFTEDVDALMNSACQMKMEGLIGKRSGSPYVSRRSDSWIKLK 489 Query: 407 CEHRQEFVIAGYTEPAGQRSGFGAILVGV-HDEQGQLQYAGRVGTGFDERLLGSMLKQFR 465 C+HRQEFVI G+T+P G RSGFGA+++ + + + G+L+YAG+VGTGF E L ++LK+ Sbjct: 490 CKHRQEFVIVGFTDPKGARSGFGALVLALTNKDSGELRYAGKVGTGFTESTLATILKKLL 549 Query: 466 QREQEQPAFVNPPTGQQRRGVHWLKPELVAEVKFAQWTKSGILRHGSFVALREDKAPEEI 525 EQ++ +PP G +G+HWLKPEL+AEV FA+ T G++RH F +R DK ++I Sbjct: 550 PLEQKKVPVAHPPKGVDAKGIHWLKPELLAEVMFAEITSDGVVRHAVFHGIRTDKPAKDI 609 Query: 526 VRETPGSASDEVHPENAEAKPKAPARRSAQDLSRPVTVEGVKLTHPGKILFPDTGLTKLE 585 E P A + AEA ++P T VK+THP +++ P +GLTK E Sbjct: 610 TEEKPAPAPKKATSAKAEA-------------TKP-TSSKVKITHPERVIDPSSGLTKRE 655 Query: 586 LARYYQSVAPWILPELKQRPLSLVRCPDGHAGKCFFQKHTGQGMPDAIETIEVPEGEGKA 645 LA YY V+PW+LP LK RP++LVR P+G G+ FFQK+ + I T VP+ E Sbjct: 656 LAEYYAQVSPWLLPHLKDRPIALVRAPEGITGELFFQKNADRLAIPNITT--VPKAEAGK 713 Query: 646 RYMMVNDVAGLVATVQMGVLELHAWGATGRALDKPDRVVFDLDPAPDVPWDTVVEGAQLV 705 M++N V LV VQM +ELH+W T +D+PDR V DLDP P +PW +VE QL Sbjct: 714 AGMVINSVEALVGAVQMSTIELHSWNGTTARIDQPDRFVLDLDPDPALPWRAMVEATQLT 773 Query: 706 RGLLEELGLSCLLKTSGGKGLHVMVPIRPEHDWDVIKDWAHRLAAHLARLLPDRFIARMS 765 +L+ELGL LKTSGGKG+H+MVP+ P+ W+ +K ++ + ++A+L+PDRF A + Sbjct: 774 LVVLDELGLQSFLKTSGGKGIHIMVPLTPKASWEEVKSFSQAVVKYIAKLIPDRFSAVLG 833 Query: 766 KSARTGKIFIDYLRNAPGATTVVAYSVRARDGAPVSVPITWEELEQGVQADHFRVSTMRK 825 R GKIFIDYLRNA GATTV Y+ RAR+G PVSVPI EE+ + A + ++ +++ Sbjct: 834 PKNRIGKIFIDYLRNAKGATTVNVYAARAREGLPVSVPIYREEVAELKSAARWNITNLQE 893 Query: 826 RLESLSHSDPWADFNKSPQRLTRAM 850 RL+ L DPWA+ + Q +T M Sbjct: 894 RLDELGGDDPWAELASTKQLITSEM 918 >ref|YP_347829.1| ATP-dependent DNA ligase [Pseudomonas fluorescens Pf0-1] gb|ABA73840.1| ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module [Pseudomonas fluorescens Pf0-1] Length = 848 Score = 725 bits (1871), Expect = 0.0, Method: Composition-based stats. Identities = 404/868 (46%), Positives = 536/868 (61%), Gaps = 51/868 (5%) Query: 5 SSALDRYHAKRDFSITPEPS-GHAQSARRQGKQASPEGLQFFIQRHHARRLHYDFRLELD 63 S LD Y+ RDFS T EP+ GH RR K A LQF IQ+H A LHYDFRLELD Sbjct: 2 SRNLDDYNRMRDFSATSEPAAGH----RRGKKPAGDHALQFCIQKHDASHLHYDFRLELD 57 Query: 64 GVLKSWAVPKGPSLDPHDKRLAVRVEDHPFDYGTFEGDIPAHQYGAGHVVLWDRGQWQPH 123 G LKSWAVPKGPSLDP KRLAV VEDHP DY TFEG IP YGAG V++WDRG W P Sbjct: 58 GALKSWAVPKGPSLDPKVKRLAVHVEDHPLDYATFEGSIPEGHYGAGDVIVWDRGVWIPL 117 Query: 124 GDPQAGLRKGHLSFLLTGEKLQGRWALVRMGKPAEDGKENWLLIKEEDDAARNGAAAAIT 183 DP+ KG L F L GEKL G W LVR P + KE W LIK +D AAR + + Sbjct: 118 EDPEKAYAKGKLKFELQGEKLAGVWNLVRTHMPGK--KEQWFLIKHQDGAARPQSDYDVL 175 Query: 184 DLRPESV---KDLGDTPS-AGKAIAP------SPVQSMS---------DMPERMEAQLAT 224 P+SV + + D P + K + P +P +S S +P +++ QLAT Sbjct: 176 VAEPDSVLSERTIVDKPRLSAKQVKPLQGPAKAPRKSASGKLTGAHKAKIPAQLKPQLAT 235 Query: 225 LADTAPQGEEWLSELKFDGYRGLCRIENGRAAIHTREGLDWSHRWPILVEALAKLPVDQA 284 L ++AP+G+ W E+KFDGYR + RI+ + TR G DW+H+ P +ALA L ++ A Sbjct: 236 LVESAPEGD-WQYEIKFDGYRIMARIDQDEVQLFTRNGHDWTHKLPKQAQALAALGLESA 294 Query: 285 WIDGEVVALDADGRVSFEALQNLVRGDRQQANGIRLALYAFDLLYLNGHDVRELPLHQRK 344 W+DGE+V DADG F+ALQN R + + Y FDL YLNG D+RE+ + +R+ Sbjct: 295 WLDGEMVVADADGVPDFQALQNAFDSGRSE----NIVYYLFDLPYLNGVDLREVAVEERR 350 Query: 345 ELLREVIPGGDEQGLLLYSEHIAGHADEVFRHACQHGMEGIVVKRADAPYSGRRDRNWIK 404 L V+ + LL +SE + ACQ MEG++ KR +PY RR +WIK Sbjct: 351 AALATVLKT-HQDPLLRFSEAFDETPQALLNSACQMRMEGLIGKRLGSPYVSRRSSDWIK 409 Query: 405 VKCEHRQEFVIAGYTEPAGQRSGFGAILVGVHD-EQGQLQYAGRVGTGFDERLLGSMLKQ 463 +KC+HRQEFVI GYT+P G RS FGA+L+G+HD + G+L+YAG+VGTGF+E L S+L Q Sbjct: 410 LKCKHRQEFVIVGYTDPKGARSSFGALLLGLHDRDSGELRYAGKVGTGFNETTLKSILAQ 469 Query: 464 FRQREQEQPAFVNPPTGQQRRGVHWLKPELVAEVKFAQWTKSGILRHGSFVALREDKAPE 523 + ++PA NPPTG + +GVHWLKP L+AEV FA+ T+ G +RH F LREDK + Sbjct: 470 LKPLRVKKPAVANPPTGFEAKGVHWLKPSLLAEVAFAEMTQDGSVRHAVFHGLREDKPAK 529 Query: 524 EIVRETPGSASDEVHPENAEAKPKAPARRSAQDLSRPVTVEG-VKLTHPGKILFPDTGLT 582 +I E AKP ++ + S+ +G V++THP +++ +G T Sbjct: 530 DITEE--------------RAKPMNTSKTESTAPSQSGLADGKVRITHPDRVIDASSGTT 575 Query: 583 KLELARYYQSVAPWILPELKQRPLSLVRCPDGHAGKCFFQKHTGQGMPDAIETIEVPEGE 642 K++LA YY SVA WILP+LK RP++LVR PDG AG FFQK+ I T++ E Sbjct: 576 KMQLAEYYASVAEWILPQLKDRPVALVRAPDGIAGDLFFQKNAEHLAIPGIRTLD-KELT 634 Query: 643 GKARYMMVNDVAGLVATVQMGVLELHAWGATGRALDKPDRVVFDLDPAPDVPWDTVVEGA 702 G+ M++N+ L+ VQM +ELH W AT LDKPDR V DLDP P +PW +++E Sbjct: 635 GQP-VMLINNAEALIGAVQMSTVELHTWNATTTDLDKPDRFVLDLDPDPALPWKSMIEAT 693 Query: 703 QLVRGLLEELGLSCLLKTSGGKGLHVMVPIRPEHDWDVIKDWAHRLAAHLARLLPDRFIA 762 L +L+ELGL LKTSGGKG+H++VP+ +H WD +KD++H + H+A+LLP+RF A Sbjct: 694 ALTLTVLDELGLKAFLKTSGGKGIHLVVPLTRKHGWDEVKDFSHAIVTHMAKLLPERFSA 753 Query: 763 RMSKSARTGKIFIDYLRNAPGATTVVAYSVRARDGAPVSVPITWEELEQGVQADHFRVST 822 R G+IFIDYLRN GATT+ AY+ R R+G PVSVP+ EE+ + AD + V Sbjct: 754 VSGPKNRVGRIFIDYLRNGLGATTICAYAARTREGLPVSVPLFREEVGEIKGADQWNVHN 813 Query: 823 MRKRLESLSHSDPWADFNKSPQRLTRAM 850 + +RL + +PWAD K+ Q +T M Sbjct: 814 VHERLAEVG-DEPWADIKKTRQSITAEM 840 >ref|ZP_03399463.1| DNA ligase, ATP-dependent [Pseudomonas syringae pv. tomato T1] ref|ZP_07229656.1| ATP-dependent DNA ligase [Pseudomonas syringae pv. tomato Max13] ref|ZP_07253327.1| ATP-dependent DNA ligase [Pseudomonas syringae pv. tomato K40] ref|ZP_07257830.1| ATP-dependent DNA ligase [Pseudomonas syringae pv. tomato NCPPB 1108] gb|EEB57466.1| DNA ligase, ATP-dependent [Pseudomonas syringae pv. tomato T1] Length = 851 Score = 716 bits (1847), Expect = 0.0, Method: Composition-based stats. Identities = 393/856 (45%), Positives = 524/856 (61%), Gaps = 37/856 (4%) Query: 11 YHAKRDFSITPEPSGHAQSARRQGKQASPEGLQFFIQRHHARRLHYDFRLELDGVLKSWA 70 Y KR+F +T EP+ ++R+GK A L F IQ+H AR LHYDFRLELDG LKSWA Sbjct: 8 YTRKRNFDVTSEPA----ESKRKGK-ARSGALSFVIQKHDARNLHYDFRLELDGTLKSWA 62 Query: 71 VPKGPSLDPHDKRLAVRVEDHPFDYGTFEGDIPAHQYGAGHVVLWDRGQWQPHGDPQAGL 130 VPKGPSLDP KRLAV VEDHP DY FEG IP QYG G V++WDRG WQPHGDP+ Sbjct: 63 VPKGPSLDPKQKRLAVHVEDHPLDYAAFEGSIPKGQYGGGDVIVWDRGIWQPHGDPRKTY 122 Query: 131 RKGHLSFLLTGEKLQGRWALVRMGKPAEDGKENWLLIKEEDDAARNGAAAAITDLRPESV 190 +G L F L GEKL G WALVR KE WLLIKE+DD AR A IT+ +P+SV Sbjct: 123 EEGKLKFTLIGEKLSGEWALVRTRLKGSGSKEQWLLIKEKDDIARPAAEYDITEAQPQSV 182 Query: 191 KDLG------DTPSAGKAIA--------PSPVQSMSDMPERMEAQLATLADTAPQGEEWL 236 P+ KA A P+P ++ + P+ QLATL D P G+ WL Sbjct: 183 ISGAHVGAGRSAPAEPKAKAVEAKPARKPAPKKAKAVFPDTFAPQLATLVDAPPAGD-WL 241 Query: 237 SELKFDGYRGLCRIENGRAAIHTREGLDWSHRWPILVEALAKLPVDQAWIDGEVVALDAD 296 E+KFDGYR L RI+N + TR G DW+ + P L +AL L + +W DGEVV LD Sbjct: 242 YEIKFDGYRMLTRIQNDEVRLFTRNGNDWTDQLPELTKALKGLKLQDSWFDGEVVVLDEQ 301 Query: 297 GRVSFEALQNLVRGDRQQANGIRLALYAFDLLYLNGHDVRELPLHQRKELLREVIPGGDE 356 G F+ LQN + + + Y FD+ +L+G D+RE+PL QR++ L++V+ G Sbjct: 302 GLPDFQGLQNAF----DEGHSKNIFYYLFDMPFLSGEDLREVPLEQRRDALKQVL-GSQR 356 Query: 357 QGLLLYSEHI-AGHADEVFRHACQHGMEGIVVKRADAPYSGRRDRNWIKVKCEHRQEFVI 415 LL YS+ AGH D + A G+EG++ KRA + Y G+R+ +WIK+KC RQEFVI Sbjct: 357 SRLLRYSDAFQAGHQD-IVASAAAMGLEGVIGKRAGSAYVGKRNADWIKLKCRLRQEFVI 415 Query: 416 AGYTEPAGQRSGFGAILVGVHDEQGQLQYAGRVGTGFDERLLGSMLKQFRQREQEQPAFV 475 GYT P G RS FGA+L+ V+D+ L YAGRVGTGF E L + KQ + +E+ Sbjct: 416 VGYTAPQGSRSAFGALLLAVNDDAQGLVYAGRVGTGFTEATLKHVHKQLKPLHREESPLA 475 Query: 476 NPPTGQQRRGVHWLKPELVAEVKFAQWTKSGILRHGSFVALREDKAPEEIVRETPGSASD 535 T Q RGV W++P LV E +FAQWT+ GI+R +F LR DK ++VRE Sbjct: 476 KKLTSAQARGVQWVEPTLVCEAEFAQWTREGIVRQAAFFGLRGDKPAGDVVRE------- 528 Query: 536 EVHPENAEAKPKAPARRSAQDLSR-PVTVEGVKLTHPGKILFPDTGLTKLELARYYQSVA 594 + P A + P+R+ + +R V V G ++HP +++ TG K+ELA++Y+S+A Sbjct: 529 DAQPAEAASVTPEPSRQPGKKTARGKVDVAGTGISHPQRVIDSTTGTKKIELAQFYESIA 588 Query: 595 PWILPELKQRPLSLVRCPDGHAGKCFFQKHTGQGMPDAIETIEVPEGEGKARYMMVNDVA 654 WILP L +RP++L+RCP+G G+ FFQKH I ++ G A M ++ V Sbjct: 589 DWILPYLNKRPVALLRCPEGIDGEQFFQKHAEHLAIPHIRQLDRALDPGHAALMEIDSVQ 648 Query: 655 GLVATVQMGVLELHAWGATGRALDKPDRVVFDLDPAPDVPWDTVVEGAQLVRGLLEELGL 714 LV QMG +ELH WGAT ++ PD V DLDP P +PW +++E Q+V +LEELGL Sbjct: 649 ALVGAAQMGAIELHTWGATRDRIETPDHFVLDLDPDPALPWRSMIEATQMVLAVLEELGL 708 Query: 715 SCLLKTSGGKGLHVMVPIRPEHDWDVIKDWAHRLAAHLARLLPDRFIARMSKSARTGKIF 774 LKTSGGKG+H++VP+ + +WD +K +A +A ++R LP+RF A M R GKIF Sbjct: 709 EAFLKTSGGKGMHIIVPLARQAEWDTVKAFAKAIAEFISRQLPERFTATMGPKNRVGKIF 768 Query: 775 IDYLRNAPGATTVVAYSVRARDGAPVSVPITWEELEQGVQADHFRVSTMRKRLESLSHSD 834 IDYLRN+ G +TV AYSVRAR G PVSVPI EL + + ++ + +RL L SD Sbjct: 769 IDYLRNSRGGSTVTAYSVRARPGLPVSVPIALHELTGLTSSAQWDITNLEQRLSQLK-SD 827 Query: 835 PWADFNKSPQRLTRAM 850 PWA ++ +++T+ M Sbjct: 828 PWAGYSNR-RKITQKM 842