BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1664.p (339 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775677.1| Ku domain-containing protein [Herbaspirillum... 454 e-125 ref|YP_003052337.1| Ku protein [Methylovorus glucosetrophus SIP3... 292 5e-77 ref|YP_001898089.1| Ku protein [Ralstonia pickettii 12J] >gi|187... 272 6e-71 ref|YP_002980467.1| Ku protein [Ralstonia pickettii 12D] >gi|240... 266 4e-69 ref|ZP_07675391.1| Ku protein [Ralstonia sp. 5_7_47FAA] >gi|3089... 265 1e-68 >ref|YP_003775677.1| Ku domain-containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ63769.1| Ku domain containing protein [Herbaspirillum seropedicae SmR1] Length = 349 Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 282/349 (80%), Positives = 306/349 (87%), Gaps = 10/349 (2%) Query: 1 MRRALWKGAISFGLINIPVELYTAEKHDELDFTLLDKRDLSPVGYKRYNKKSGREVPWEN 60 MRRALWKGAISFGLINIPVELYTAEKHDELDFTLLD+RDLSPVGYKRYNKKSGREVPWEN Sbjct: 1 MRRALWKGAISFGLINIPVELYTAEKHDELDFTLLDQRDLSPVGYKRYNKKSGREVPWEN 60 Query: 61 IIKGYQYEEGKFVLMSDEDLRQANVEATQSIDIQSFVEREQVPILYYEQPYFLAPAKGGD 120 IIKGYQYEEGK+VLMSDEDLR+ANVEATQSIDIQSFVEREQVPILYYEQPYFLAPAKGGD Sbjct: 61 IIKGYQYEEGKYVLMSDEDLRRANVEATQSIDIQSFVEREQVPILYYEQPYFLAPAKGGD 120 Query: 121 KAYALLRETLLASDKMAIAQIVIRTRQHLAALIPQGDMLQLITLRYPSELRAPDDLPVPS 180 KAYALLRETLLASDKMAIAQIVIRTRQHLAALIPQGDMLQLITLRYPSELRAPDDLPVP+ Sbjct: 121 KAYALLRETLLASDKMAIAQIVIRTRQHLAALIPQGDMLQLITLRYPSELRAPDDLPVPT 180 Query: 181 RKSKKSAVTKQEVEMARALVDHMSSDWEPAQFHDTYRDDVLALIKKKIKSRQTHAVAEPD 240 RKSKK+AVT+QEVEMARALV+HMS+ WEP QFHDTYRDDVLALI+KK KSRQTH VAEPD Sbjct: 181 RKSKKAAVTRQEVEMARALVEHMSAQWEPEQFHDTYRDDVLALIQKKTKSRQTHEVAEPD 240 Query: 241 EAAAPATSGAKVVDLMALLKSSLEGRGKSKP------APKDKAEESTAKVHKMADRKPAA 294 EAAAPA+SGAKVVDLMALLKSSLEGRG+S AP++ E+ AKVHK+ RKPAA Sbjct: 241 EAAAPASSGAKVVDLMALLKSSLEGRGRSSAKAGDDKAPQEAKEKRGAKVHKLPARKPAA 300 Query: 295 KRSSAAKSESRTAAR-SKASPRSKAAASKSTARSAPAR---ANARRAQA 339 ++ + A +K +SK A++ +RSA R + ARRAQA Sbjct: 301 NTATKTAATKTAAKSVAKPRTKSKTASTSKASRSAATRRSGSTARRAQA 349 >ref|YP_003052337.1| Ku protein [Methylovorus glucosetrophus SIP3-4] gb|ACT51810.1| Ku protein [Methylovorus glucosetrophus SIP3-4] Length = 293 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 155/294 (52%), Positives = 220/294 (74%), Gaps = 5/294 (1%) Query: 1 MRRALWKGAISFGLINIPVELYTAEKHDELDFTLLDKRDLSPVGYKRYNKKSGREVPWEN 60 M RALWKGAISFGL++IPVELY + +D +LD+RD SPVGYKRYNK +G+E+ E+ Sbjct: 1 MPRALWKGAISFGLVHIPVELYPSHNAPGIDLDMLDRRDFSPVGYKRYNKTTGKEIHTED 60 Query: 61 IIKGYQYEEGKFVLMSDEDLRQANVEATQSIDIQSFVEREQVPILYYEQPYFLAPAKGGD 120 I+KGYQYE+G++V+++D ++RQAN EATQ+IDIQ+FV+ +++ LY+EQPY+L PAKGG+ Sbjct: 61 IVKGYQYEKGEYVVLTDAEIRQANKEATQAIDIQAFVKVDEISPLYFEQPYYLKPAKGGE 120 Query: 121 KAYALLRETLLASDKMAIAQIVIRTRQHLAALIPQGDMLQLITLRYPSELRAPDDLPVPS 180 K YALLRETL +D++ IAQIV+RT+QHLAAL+ ++ L LRY ++R P++L +P Sbjct: 121 KVYALLRETLRTTDRIGIAQIVMRTKQHLAALMVVDQVIVLNMLRYAEDIRPPEELGLPG 180 Query: 181 RKSKKSAVTKQEVEMARALVDHMSSDWEPAQFHDTYRDDVLALIKKKIKSRQTHAVAEPD 240 + K V+ +E++MA ALV+ M+ W+P QFHD +R+D++AL+KKKI+++QTHA+ EP+ Sbjct: 181 EDAPKVRVSDKEIKMAHALVEDMTEPWDPEQFHDRFREDIMALVKKKIRNKQTHALMEPE 240 Query: 241 EAAAPATSGAKVVDLMALLKSSLEGRGK----SKPAPKDKAEESTAKVHKMADR 290 + TS + +VDLMALLK S+ R K S +KAEE A+ HK R Sbjct: 241 DETPADTSTSNIVDLMALLKESIGRRMKPAKESSGNKAEKAEEPPAR-HKATRR 293 >ref|YP_001898089.1| Ku protein [Ralstonia pickettii 12J] gb|ACD25657.1| Ku protein [Ralstonia pickettii 12J] Length = 304 Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 146/312 (46%), Positives = 214/312 (68%), Gaps = 8/312 (2%) Query: 1 MRRALWKGAISFGLINIPVELYTAEKHDELDFTLLDKRDLSPVGYKRYNKKSGREVPWEN 60 M R +WKGA+SFGL++IPV LY A + D+LDF LD+R + VGYKR NK +G+EVP E Sbjct: 1 MPRVIWKGAVSFGLVHIPVALYPATRSDDLDFDWLDRRTMDRVGYKRINKTTGKEVPREQ 60 Query: 61 IIKGYQYEEGKFVLMSDEDLRQANVEATQSIDIQSFVEREQVPILYYEQPYFLAPAKGGD 120 I++GY YE+ ++V+++DED+R AN +TQ++D+ +FV+ ++P LY + PYFLAP + G+ Sbjct: 61 IVRGYAYEKDRYVILTDEDIRAANPASTQTVDLLTFVDAAEIPFLYLDTPYFLAPDRRGE 120 Query: 121 KAYALLRETLLASDKMAIAQIVIRTRQHLAALIPQGDMLQLITLRYPSELRAPDDLPVPS 180 K YALLRE L S K+ +A +V+ T+QHLAALIP G +L L TLR+ +E+R +L VP Sbjct: 121 KVYALLREALTRSQKIGVANVVLHTKQHLAALIPMGPVLVLHTLRWSNEVRDWSELDVPE 180 Query: 181 RKSKKSAVTKQEVEMARALVDHMSSDWEPAQFHDTYRDDVLALIKKKIKSRQTHAVAEPD 240 +K + +T +E++MA L+D MS W+PA++HDT+RDD+LAL+ +K++ +T +V EP Sbjct: 181 EGAKAAKLTAKEIDMAEKLIDDMSGTWDPAEYHDTFRDDILALVDRKVREGRTESV-EPM 239 Query: 241 EAAAPATSGAKVVDLMALLKSSLEGRGKSKPAPKDKAEESTAKVHKMADRKPAAKRSSAA 300 EA A V+DL LL+ SL RG+ K A DKA+E A + A R +A+ Sbjct: 240 EAETAAPRSGNVIDLTDLLRQSLAKRGEGKDASNDKAQEEPAP-------RKRAPRKAAS 292 Query: 301 KSESRTAARSKA 312 K+ +T R +A Sbjct: 293 KTARKTTTRKRA 304 >ref|YP_002980467.1| Ku protein [Ralstonia pickettii 12D] gb|ACS61795.1| Ku protein [Ralstonia pickettii 12D] Length = 304 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 136/282 (48%), Positives = 197/282 (69%), Gaps = 1/282 (0%) Query: 1 MRRALWKGAISFGLINIPVELYTAEKHDELDFTLLDKRDLSPVGYKRYNKKSGREVPWEN 60 M R +WKGA+SFGL++IPV LY A + D+LDF LD+R + VGYKR NK +G+EVP E Sbjct: 1 MPRVIWKGAVSFGLVHIPVALYPATRSDDLDFDWLDRRTMDRVGYKRINKTTGKEVPREQ 60 Query: 61 IIKGYQYEEGKFVLMSDEDLRQANVEATQSIDIQSFVEREQVPILYYEQPYFLAPAKGGD 120 I++GY YE+ ++V+++DED+R AN +TQ++D+ +FV+ ++P LY + PYFLAP + G+ Sbjct: 61 IVRGYAYEKDRYVILTDEDIRAANPVSTQTVDLLTFVDAAEIPFLYLDTPYFLAPDRRGE 120 Query: 121 KAYALLRETLLASDKMAIAQIVIRTRQHLAALIPQGDMLQLITLRYPSELRAPDDLPVPS 180 K YALLRE L S K+ +A +V+ T+QHLAALIP G +L L TLR+ +E+R +L VP Sbjct: 121 KVYALLREALTRSQKIGVANVVLHTKQHLAALIPMGPVLVLHTLRWSNEVRDWSELDVPE 180 Query: 181 RKSKKSAVTKQEVEMARALVDHMSSDWEPAQFHDTYRDDVLALIKKKIKSRQTHAVAEPD 240 +K + +T +E++MA L+D MS W+PA++HDT+RDD+L L+ +K++ +T +V EP Sbjct: 181 EGAKAAKLTAKEIDMAEKLIDDMSGKWDPAEYHDTFRDDILGLVDRKVREGRTESV-EPM 239 Query: 241 EAAAPATSGAKVVDLMALLKSSLEGRGKSKPAPKDKAEESTA 282 E A V+DL LL+ SL RGK K +AEE A Sbjct: 240 ETETAAPRSGNVIDLTDLLRQSLAKRGKGKGESAQEAEEEPA 281 >ref|ZP_07675391.1| Ku protein [Ralstonia sp. 5_7_47FAA] gb|EFP66227.1| Ku protein [Ralstonia sp. 5_7_47FAA] Length = 304 Score = 265 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 135/282 (47%), Positives = 197/282 (69%), Gaps = 1/282 (0%) Query: 1 MRRALWKGAISFGLINIPVELYTAEKHDELDFTLLDKRDLSPVGYKRYNKKSGREVPWEN 60 M R +WKGA+SFGL++IPV LY A + D+LDF LD+R + VGYKR NK +G+EVP E Sbjct: 1 MPRVIWKGAVSFGLVHIPVALYPATRSDDLDFDWLDRRTMDRVGYKRINKTTGKEVPREQ 60 Query: 61 IIKGYQYEEGKFVLMSDEDLRQANVEATQSIDIQSFVEREQVPILYYEQPYFLAPAKGGD 120 I++GY YE+ ++V+++DED+R AN +TQ++D+ +FV+ ++P LY + PYFLAP + G+ Sbjct: 61 IVRGYAYEKDRYVILTDEDIRAANPASTQTVDLLTFVDAAEIPFLYLDTPYFLAPDRRGE 120 Query: 121 KAYALLRETLLASDKMAIAQIVIRTRQHLAALIPQGDMLQLITLRYPSELRAPDDLPVPS 180 K YALLRE L S K+ +A +V+ T+QHLAALIP G +L L TLR+ +E+R +L +P Sbjct: 121 KVYALLREALTRSQKIGVANVVLHTKQHLAALIPMGPVLVLHTLRWSNEVRDWSELDLPE 180 Query: 181 RKSKKSAVTKQEVEMARALVDHMSSDWEPAQFHDTYRDDVLALIKKKIKSRQTHAVAEPD 240 +K + +T +E++MA L+D MS W+PA++HDT+RDD+L L+ +K++ +T +V EP Sbjct: 181 EGAKAAKLTAKEIDMAEKLIDDMSGKWDPAEYHDTFRDDILGLVDRKVREGRTESV-EPM 239 Query: 241 EAAAPATSGAKVVDLMALLKSSLEGRGKSKPAPKDKAEESTA 282 E A V+DL LL+ SL RGK K +AEE A Sbjct: 240 ETETAAPRSGNVIDLTDLLRQSLAKRGKGKGESAKEAEEEPA 281