BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1662.p         (85 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775675.1| hypothetical protein Hsero_2268 [Herbaspiril...    96   2e-18
ref|YP_004752625.1| hypothetical protein CFU_1971 [Collimonas fu...    59   2e-07

>ref|YP_003775675.1| hypothetical protein Hsero_2268 [Herbaspirillum seropedicae SmR1]
 gb|ADJ63767.1| hypothetical protein Hsero_2268 [Herbaspirillum seropedicae SmR1]
          Length = 112

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/84 (63%), Positives = 66/84 (78%)

Query: 2   DAIEQQREEYARQLRLRFEEYKRWAIEHWPVAEQPLDDSAFIAAERELGLLTGTMLHPGR 61
           + + +QR++YAR+LR RFE+YK WAI HWPV EQPL++SAF+AAEREL L+TG MLHPG 
Sbjct: 29  EPLARQRQDYARELRARFEQYKSWAITHWPVREQPLEESAFVAAERELELITGAMLHPGG 88

Query: 62  KPDGIPASGAQQAQFEDVTPAPWP 85
               IPA G +  QF+ VTPAPWP
Sbjct: 89  PSQAIPADGDEPGQFQQVTPAPWP 112


>ref|YP_004752625.1| hypothetical protein CFU_1971 [Collimonas fungivorans Ter331]
 gb|AEK61802.1| hypothetical protein CFU_1971 [Collimonas fungivorans Ter331]
          Length = 84

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/83 (40%), Positives = 52/83 (62%), Gaps = 9/83 (10%)

Query: 6  QQREEYARQLRLRFEEYKRWAIEHWPVAEQPLDDSAFIAAERELGLLTGTMLH---PGRK 62
          Q R+ Y+++L  RF++ +RWA+++WP+ +QPL  + F AAE E+ LL G  LH   P  +
Sbjct: 8  QIRDNYSKELNSRFKQLRRWAMDNWPLPDQPLTTADFSAAEHEIQLLLGAKLHSQLPASR 67

Query: 63 PDGIPASGAQQAQFEDVTPAPWP 85
          P+        + Q+  VTPAPWP
Sbjct: 68 PEDF------EPQYLPVTPAPWP 84