BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1661.p         (70 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004752624.1| intracellular protease, PfpI family [Collimo...    59   2e-07

>ref|YP_004752624.1| intracellular protease, PfpI family [Collimonas fungivorans Ter331]
 gb|AEK61801.1| intracellular protease, PfpI family [Collimonas fungivorans Ter331]
          Length = 309

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/64 (54%), Positives = 48/64 (75%)

Query: 2   SESKNGKDHRPNQYDTPSEVTLDEANEMSFPGSDPVSTSNITRIEKAPEMDKAKDDHQNS 61
           +  K  K+ R  ++D+P E+TLD ANEMSFP SDPV++SNITR+ +AP+M  A  DHQNS
Sbjct: 48  ANDKQQKNVRSGKHDSPDEITLDNANEMSFPASDPVASSNITRVAEAPDMAAAAADHQNS 107

Query: 62  HRVK 65
           + V+
Sbjct: 108 NAVE 111