BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1660.p         (243 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775674.1| intracellular protease/amidase [Herbaspirill...   423   e-116
ref|YP_004752624.1| intracellular protease, PfpI family [Collimo...   247   1e-63
ref|YP_004230214.1| intracellular protease, PfpI family [Burkhol...   234   8e-60
ref|YP_003607541.1| intracellular protease PfpI family [Burkhold...   233   1e-59
ref|YP_003909020.1| intracellular protease, PfpI family [Burkhol...   232   3e-59

>ref|YP_003775674.1| intracellular protease/amidase [Herbaspirillum seropedicae SmR1]
 gb|ADJ63766.1| intracellular protease/amidase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 242

 Score =  423 bits (1087), Expect = e-116,   Method: Composition-based stats.
 Identities = 234/242 (96%), Positives = 238/242 (98%)

Query: 2   MSNRYNQLKVAVLVTDGFEQAELLEPKKALEAAGATVHILSDKSDSVQGFKHVDKGEVVS 61
           MSNRY+QLKVAVLVTDGFEQAELLEPKKALEAAGATVHILSDKSDSVQGFKHVDKGEVVS
Sbjct: 1   MSNRYHQLKVAVLVTDGFEQAELLEPKKALEAAGATVHILSDKSDSVQGFKHVDKGEVVS 60

Query: 62  VDGGLDSANPADYSAVLLPGGVVNGDAMRLLPEARNFVRAANDAEKPIASICHGGWLLIS 121
           VDG LD+A+  DYSAVLLPGGVVNGDAMRLLP+ARNFVRAANDAEKPIASICHGGWLLIS
Sbjct: 61  VDGSLDNASADDYSAVLLPGGVVNGDAMRLLPQARNFVRAANDAEKPIASICHGGWLLIS 120

Query: 122 AGIAKGRTVTSWPSLQDDFKNAGSQWVDQEVVRDENFVSSRKPTDIPAFNNEFMKLLDEQ 181
           AGIAKGRTVTSWPSLQDDFKNAGSQWVDQEVVRDENFVSSRKP DIPAFNNEFMKLLDEQ
Sbjct: 121 AGIAKGRTVTSWPSLQDDFKNAGSQWVDQEVVRDENFVSSRKPADIPAFNNEFMKLLDEQ 180

Query: 182 QRREHRQPPSSAAGDEAVTDAGGEAATAAPSLSAKGRAPAAPPSHENEAFAVAHGEAPQS 241
           QRREHRQPPSSAAGDEAVTDAGGEAATAAPSLSAKGRAPAAPPSHENEAFAVAHGEAPQS
Sbjct: 181 QRREHRQPPSSAAGDEAVTDAGGEAATAAPSLSAKGRAPAAPPSHENEAFAVAHGEAPQS 240

Query: 242 DG 243
           DG
Sbjct: 241 DG 242


>ref|YP_004752624.1| intracellular protease, PfpI family [Collimonas fungivorans Ter331]
 gb|AEK61801.1| intracellular protease, PfpI family [Collimonas fungivorans Ter331]
          Length = 309

 Score =  247 bits (631), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 128/177 (72%), Positives = 152/177 (85%)

Query: 7   NQLKVAVLVTDGFEQAELLEPKKALEAAGATVHILSDKSDSVQGFKHVDKGEVVSVDGGL 66
           + + +A+LVTDGFEQAELL+PKKALE AGATVH++SD+S+SVQGF+H +K   VSVD  L
Sbjct: 125 SHMNIAILVTDGFEQAELLDPKKALEEAGATVHVVSDQSESVQGFQHTEKALRVSVDKAL 184

Query: 67  DSANPADYSAVLLPGGVVNGDAMRLLPEARNFVRAANDAEKPIASICHGGWLLISAGIAK 126
             A P DY+AVLLPGGVVNGDA+R+ P+AR F+++ N A+KPIASICHGGWLLISAGIAK
Sbjct: 185 AKALPEDYAAVLLPGGVVNGDALRMSPQARGFIQSINKADKPIASICHGGWLLISAGIAK 244

Query: 127 GRTVTSWPSLQDDFKNAGSQWVDQEVVRDENFVSSRKPTDIPAFNNEFMKLLDEQQR 183
            RTVTSWPSLQDDF+NAGS W+D+EVVRD NFVSSRKP DIPAFN  F+ LL EQQ+
Sbjct: 245 DRTVTSWPSLQDDFRNAGSTWLDKEVVRDRNFVSSRKPDDIPAFNQAFISLLREQQQ 301


>ref|YP_004230214.1| intracellular protease, PfpI family [Burkholderia sp. CCGE1001]
 gb|ADX57154.1| intracellular protease, PfpI family [Burkholderia sp. CCGE1001]
          Length = 183

 Score =  234 bits (597), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 118/181 (65%), Positives = 144/181 (79%)

Query: 2   MSNRYNQLKVAVLVTDGFEQAELLEPKKALEAAGATVHILSDKSDSVQGFKHVDKGEVVS 61
           M+N  + LKVAVL  DGFEQAEL+EPK+AL  AGATVH++S+K   +QGFKHVDKG+ V 
Sbjct: 1   MANSLDGLKVAVLAVDGFEQAELVEPKRALAEAGATVHVISEKPGKIQGFKHVDKGDTVD 60

Query: 62  VDGGLDSANPADYSAVLLPGGVVNGDAMRLLPEARNFVRAANDAEKPIASICHGGWLLIS 121
           VD   D A   DY AV+LPGGVVNGDA+RLLP+A+ FV+AA++A+KPIA ICHGGWL +S
Sbjct: 61  VDATFDKATADDYDAVVLPGGVVNGDAIRLLPQAQAFVKAADNAKKPIAVICHGGWLPVS 120

Query: 122 AGIAKGRTVTSWPSLQDDFKNAGSQWVDQEVVRDENFVSSRKPTDIPAFNNEFMKLLDEQ 181
           AGI KGRT+TSWPSLQDD +NAG  WVD+EVV D N +SSRKP DIPAFN   +  L ++
Sbjct: 121 AGIIKGRTLTSWPSLQDDIRNAGGTWVDREVVEDNNLISSRKPDDIPAFNKALIGQLSKR 180

Query: 182 Q 182
           +
Sbjct: 181 K 181


>ref|YP_003607541.1| intracellular protease PfpI family [Burkholderia sp. CCGE1002]
 gb|ADG18030.1| intracellular protease, PfpI family [Burkholderia sp. CCGE1002]
          Length = 183

 Score =  233 bits (595), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 116/181 (64%), Positives = 141/181 (77%)

Query: 2   MSNRYNQLKVAVLVTDGFEQAELLEPKKALEAAGATVHILSDKSDSVQGFKHVDKGEVVS 61
           M++  N  KVAVL  DGFEQAEL+EPK+AL  AGATVH++S K   +QGFKHVDKG+ V 
Sbjct: 1   MTDALNGYKVAVLAVDGFEQAELVEPKRALTEAGATVHVISAKPGKIQGFKHVDKGDTVD 60

Query: 62  VDGGLDSANPADYSAVLLPGGVVNGDAMRLLPEARNFVRAANDAEKPIASICHGGWLLIS 121
           VD   D A P DY A++LPGGVVNGDA+RLLP+A+ FV+A ++A+KPIA ICHG WL +S
Sbjct: 61  VDATFDKARPEDYDALVLPGGVVNGDALRLLPQAQAFVKAVDNAKKPIAVICHGTWLPVS 120

Query: 122 AGIAKGRTVTSWPSLQDDFKNAGSQWVDQEVVRDENFVSSRKPTDIPAFNNEFMKLLDEQ 181
           AGI KGRTVTSWPSLQDD +NAG  WVDQEVV D N +SSRKP D+PAFN   +  L ++
Sbjct: 121 AGIIKGRTVTSWPSLQDDIRNAGGTWVDQEVVEDGNLISSRKPADLPAFNKTLIGQLTKR 180

Query: 182 Q 182
           +
Sbjct: 181 K 181


>ref|YP_003909020.1| intracellular protease, PfpI family [Burkholderia sp. CCGE1003]
 gb|ADN59729.1| intracellular protease, PfpI family [Burkholderia sp. CCGE1003]
          Length = 183

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 118/181 (65%), Positives = 142/181 (78%)

Query: 2   MSNRYNQLKVAVLVTDGFEQAELLEPKKALEAAGATVHILSDKSDSVQGFKHVDKGEVVS 61
           M+N  + +KVAVL  DGFEQAEL+EPK+AL  AGATVH++S+K   +QGFKHVDKG+ + 
Sbjct: 1   MANSLDGVKVAVLAVDGFEQAELVEPKRALAEAGATVHVISEKPGKIQGFKHVDKGDAIE 60

Query: 62  VDGGLDSANPADYSAVLLPGGVVNGDAMRLLPEARNFVRAANDAEKPIASICHGGWLLIS 121
           VD   D A  ADY AV+LPGGVVNGDA+RLLP+A+ FV+AA+ A KPIA ICHG WL +S
Sbjct: 61  VDTTFDKATAADYDAVVLPGGVVNGDAIRLLPQAQAFVKAADSAHKPIAVICHGTWLPVS 120

Query: 122 AGIAKGRTVTSWPSLQDDFKNAGSQWVDQEVVRDENFVSSRKPTDIPAFNNEFMKLLDEQ 181
           AGI KGRTVTSWPSLQDD +NAG  WVDQEVV D N +SSRKP DIPAFN   +  L ++
Sbjct: 121 AGIIKGRTVTSWPSLQDDIRNAGGTWVDQEVVEDNNLISSRKPDDIPAFNKALIGQLSKR 180

Query: 182 Q 182
           +
Sbjct: 181 K 181