BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1657.p         (157 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775672.1| hypothetical protein Hsero_2265 [Herbaspiril...   164   6e-39
ref|YP_002363834.1| small membrane protein [Methylocella silvest...    99   2e-19
ref|YP_003269413.1| hypothetical protein Hoch_5032 [Haliangium o...    94   9e-18
ref|YP_004663735.1| hypothetical protein LILAB_03660 [Myxococcus...    92   2e-17
ref|YP_629268.1| hypothetical protein MXAN_1007 [Myxococcus xant...    91   7e-17

>ref|YP_003775672.1| hypothetical protein Hsero_2265 [Herbaspirillum seropedicae SmR1]
 gb|ADJ63764.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 106

 Score =  164 bits (414), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 84/89 (94%), Positives = 86/89 (96%)

Query: 68  MSDHITDLIGWGATLILLLTISSQVYEQWRSRSTQGVSHWLFAGQLAASTGFVAYSVLQG 127
           MS+HITDLIGWGATLILLLTISSQVYEQWRSRSTQGVSHWLFAG LAAS GFV YS+LQG
Sbjct: 17  MSEHITDLIGWGATLILLLTISSQVYEQWRSRSTQGVSHWLFAGPLAASAGFVTYSLLQG 76

Query: 128 DWVFVVSNVFLLFTALLGQVLYLRNRRRQ 156
           DWVFVVSNVFLLFTALLGQVLYLRNRRRQ
Sbjct: 77  DWVFVVSNVFLLFTALLGQVLYLRNRRRQ 105


>ref|YP_002363834.1| small membrane protein [Methylocella silvestris BL2]
 gb|ACK52472.1| small membrane protein [Methylocella silvestris BL2]
          Length = 86

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/83 (60%), Positives = 61/83 (73%)

Query: 72  ITDLIGWGATLILLLTISSQVYEQWRSRSTQGVSHWLFAGQLAASTGFVAYSVLQGDWVF 131
           +T+L+GW A  ILLLTI  QVY QWR RS++GVS WLF GQ+ AS GFV YS L G WVF
Sbjct: 1   MTELVGWSAAAILLLTICRQVYTQWRDRSSEGVSRWLFIGQITASIGFVIYSWLLGSWVF 60

Query: 132 VVSNVFLLFTALLGQVLYLRNRR 154
           V +N  +L TA+ GQ ++ RNRR
Sbjct: 61  VATNAAMLLTAVAGQAIHSRNRR 83


>ref|YP_003269413.1| hypothetical protein Hoch_5032 [Haliangium ochraceum DSM 14365]
 gb|ACY17520.1| hypothetical protein Hoch_5032 [Haliangium ochraceum DSM 14365]
          Length = 120

 Score = 93.6 bits (231), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 45/85 (52%), Positives = 61/85 (71%), Gaps = 1/85 (1%)

Query: 73  TDLIGWGATLILLLTISSQVYEQWRSRSTQGVSHWLFAGQLAASTGFVAYSVLQGDWVFV 132
           T++ GW +++IL LTISSQVY+QWR+   QGVSHWLF GQL AS GF  YS L G+WVF+
Sbjct: 3   TEIFGWCSSVILFLTISSQVYKQWRTGMGQGVSHWLFIGQLTASAGFTVYSALLGNWVFI 62

Query: 133 VSNVFLLFTALLG-QVLYLRNRRRQ 156
           V+N  +  +A++G  +L  R  R +
Sbjct: 63  VTNALMSVSAMVGLYILVFRCERDE 87


>ref|YP_004663735.1| hypothetical protein LILAB_03660 [Myxococcus fulvus HW-1]
 gb|AEI62657.1| hypothetical protein LILAB_03660 [Myxococcus fulvus HW-1]
          Length = 103

 Score = 92.4 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/81 (53%), Positives = 63/81 (77%)

Query: 74  DLIGWGATLILLLTISSQVYEQWRSRSTQGVSHWLFAGQLAASTGFVAYSVLQGDWVFVV 133
           + +GW ++ +LLLTI++QVY+QW+S S++GVS WLF GQ+ AS GF  YS   G+WVFVV
Sbjct: 4   EALGWFSSFVLLLTIATQVYKQWKSGSSEGVSKWLFVGQMTASVGFTLYSWQVGNWVFVV 63

Query: 134 SNVFLLFTALLGQVLYLRNRR 154
           +N  +L +A+LG V+ L++RR
Sbjct: 64  TNALMLLSAVLGAVIVLKHRR 84


>ref|YP_629268.1| hypothetical protein MXAN_1007 [Myxococcus xanthus DK 1622]
 gb|ABF87077.1| conserved hypothetical protein [Myxococcus xanthus DK 1622]
          Length = 103

 Score = 90.5 bits (223), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 42/81 (51%), Positives = 62/81 (76%)

Query: 74  DLIGWGATLILLLTISSQVYEQWRSRSTQGVSHWLFAGQLAASTGFVAYSVLQGDWVFVV 133
           + +GW ++ +LLLTI+ QV++QW+S S++GVS WLF GQ+ AS GF  YS   G+WVFVV
Sbjct: 4   EALGWFSSFVLLLTIAVQVHKQWKSGSSEGVSKWLFVGQMTASVGFTLYSWKVGNWVFVV 63

Query: 134 SNVFLLFTALLGQVLYLRNRR 154
           +N  +L +A+LG V+ L++RR
Sbjct: 64  TNALMLLSAVLGAVIVLKHRR 84