BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1656.p (207 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775671.1| CBS domain-containing protein [Herbaspirillu... 259 1e-67 ref|YP_002553278.1| cbs domain-containing protein [Acidovorax eb... 142 3e-32 ref|YP_002943913.1| signal transduction protein with CBS domains... 141 6e-32 ref|YP_986264.1| CBS domain-containing protein [Acidovorax sp. J... 140 8e-32 ref|YP_549010.1| signal transduction protein [Polaromonas sp. JS... 129 3e-28 >ref|YP_003775671.1| CBS domain-containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ63763.1| CBS domain containing protein [Herbaspirillum seropedicae SmR1] Length = 170 Score = 259 bits (663), Expect = 1e-67, Method: Composition-based stats. Identities = 139/174 (79%), Positives = 150/174 (86%), Gaps = 6/174 (3%) Query: 32 MHATRTIADVMTRGAHTLSPDDSVIRAAQAMESLDVGALPVCDAQRNLVGLVTDRDIVLR 91 MHATRTIADVMTRG HTL PDD+VIRAAQAME+LDVGALPVCD + LVGLVTDRDIVLR Sbjct: 1 MHATRTIADVMTRGVHTLKPDDTVIRAAQAMEALDVGALPVCDGDQRLVGLVTDRDIVLR 60 Query: 92 AVARNRLSESLPLTEVMSHEVLWCYEDEPVDDVLDDMVQRQIRRLPVMDRQKNLVGMVSL 151 VAR RL+E+ PLTEVMSH+VLWCYEDEPVDDVLDDMVQRQIRRLPVMDRQKNLVGMVSL Sbjct: 61 GVARKRLTETTPLTEVMSHDVLWCYEDEPVDDVLDDMVQRQIRRLPVMDRQKNLVGMVSL 120 Query: 152 GDVAAKTQNRGVGSALAEISLPAAPVRPAQEVSPSGDYELPEVRNSDMHEVNIG 205 GDVAAKTQN G+ ALAEISLPAAP+R P D+ LPEV D+ EVN+G Sbjct: 121 GDVAAKTQNSGIAGALAEISLPAAPLR------PDDDFRLPEVSQGDLAEVNLG 168 >ref|YP_002553278.1| cbs domain-containing protein [Acidovorax ebreus TPSY] gb|ACM33278.1| CBS domain containing protein [Acidovorax ebreus TPSY] Length = 157 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 79/143 (55%), Positives = 103/143 (72%), Gaps = 3/143 (2%) Query: 36 RTIADVMTRGAHTLSPDDSVIRAAQAMESLDVGALPVCDAQRNLVGLVTDRDIVLRAVAR 95 + ++DVMTRG T++PDD++ AAQAM L+VGALPVCD +R LVG+VTDRD+VLR +A Sbjct: 2 QNVSDVMTRGIRTMAPDDTLTTAAQAMRELNVGALPVCDGER-LVGMVTDRDMVLRGLAE 60 Query: 96 NRLSESLPLTEVMSHEVLWCYEDEPVDDVLDDMVQRQIRRLPVMDRQKNLVGMVSLGDVA 155 R L EVMS EV +CYED+PVD+ + M Q+RRLPV+DR + LVG+VSLGDVA Sbjct: 61 ERTHSRL--NEVMSREVYYCYEDQPVDEAIASMRDMQVRRLPVVDRDQRLVGIVSLGDVA 118 Query: 156 AKTQNRGVGSALAEISLPAAPVR 178 R G+A+ +IS P+ P R Sbjct: 119 TNVDERQSGTAIRDISSPSEPDR 141 >ref|YP_002943913.1| signal transduction protein with CBS domains [Variovorax paradoxus S110] gb|ACS18647.1| putative signal transduction protein with CBS domains [Variovorax paradoxus S110] Length = 157 Score = 141 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 81/152 (53%), Positives = 108/152 (71%), Gaps = 4/152 (2%) Query: 38 IADVMTRGAHTLSPDDSVIRAAQAMESLDVGALPVCDAQRNLVGLVTDRDIVLRAVARNR 97 ++++MTRG TLSP D+V AAQAM+ LD+GA+PVCD QR L+G+VTDRDIVLR VA+ R Sbjct: 4 VSELMTRGVRTLSPSDTVALAAQAMDELDIGAIPVCDGQR-LLGMVTDRDIVLRVVAQTR 62 Query: 98 LSESLPLTEVMSHEVLWCYEDEPVDDVLDDMVQRQIRRLPVMDRQKNLVGMVSLGDVAAK 157 ++ L+EVMS +V WC E++ V+ V+D+M Q+RR+PV+DR + LVGM+SLGD AAK Sbjct: 63 PLDT-ALSEVMSKDVKWCSENDNVETVMDEMAGYQVRRMPVVDRGRRLVGMLSLGDTAAK 121 Query: 158 TQNRGVGSALAEISLPAAPVRPAQEVS--PSG 187 G L IS PA P R Q + P+G Sbjct: 122 GDIGKAGDTLNIISQPAEPDRSGQSAASGPTG 153 >ref|YP_986264.1| CBS domain-containing protein [Acidovorax sp. JS42] gb|ABM42188.1| CBS domain containing protein [Acidovorax sp. JS42] Length = 157 Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 77/149 (51%), Positives = 105/149 (70%), Gaps = 3/149 (2%) Query: 36 RTIADVMTRGAHTLSPDDSVIRAAQAMESLDVGALPVCDAQRNLVGLVTDRDIVLRAVAR 95 + ++DVMTRG T++PDD++ AAQAM L+VGALPVC+ +R LVG+VTDRD+VLR +A Sbjct: 2 QNVSDVMTRGIRTMAPDDTLTTAAQAMRELNVGALPVCNGER-LVGMVTDRDMVLRGLAE 60 Query: 96 NRLSESLPLTEVMSHEVLWCYEDEPVDDVLDDMVQRQIRRLPVMDRQKNLVGMVSLGDVA 155 R L EVM EV +CYED+PVD+ + M Q+RRLPV+DR + +VG+VSLGDVA Sbjct: 61 ERTHSRL--NEVMFREVYYCYEDQPVDEAIASMRAMQVRRLPVVDRDQRVVGIVSLGDVA 118 Query: 156 AKTQNRGVGSALAEISLPAAPVRPAQEVS 184 R G+A+ +IS P+ P R +Q + Sbjct: 119 TNVDERQSGTAIRDISSPSEPDRRSQSAA 147 >ref|YP_549010.1| signal transduction protein [Polaromonas sp. JS666] gb|ABE44112.1| putative signal transduction protein with CBS domains [Polaromonas sp. JS666] Length = 170 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 75/147 (51%), Positives = 107/147 (72%), Gaps = 3/147 (2%) Query: 37 TIADVMTRGAHTLSPDDSVIRAAQAMESLDVGALPVCDAQRNLVGLVTDRDIVLRAVARN 96 T++D+MTRG TL+P D+V AA+AM+ L+VG +PVCD ++ LVG+VTDRDIV+R VA+ Sbjct: 3 TVSDLMTRGVRTLTPADTVTSAARAMDELNVGVIPVCDGEK-LVGMVTDRDIVVRGVAQE 61 Query: 97 RLSESLPLTEVMSHEVLWCYEDEPVDDVLDDMVQRQIRRLPVMDRQKNLVGMVSLGDVAA 156 +++ L+++MS V E+E VD+VL +M + QIRRLPV+D Q LVG++SLGD+AA Sbjct: 62 LDAKTTDLSDLMSTNVRTARENEDVDEVLSEMAESQIRRLPVVDDQDRLVGIISLGDIAA 121 Query: 157 KTQNR--GVGSALAEISLPAAPVRPAQ 181 K ++ V ++L ISLPA P R Q Sbjct: 122 KDPDKDADVAASLGNISLPAEPDRSNQ 148