BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1653.p (265 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775670.1| transmembrane protein [Herbaspirillum serope... 391 e-107 ref|ZP_02883033.1| protein of unknown function DUF1275 [Burkhold... 305 5e-81 ref|YP_001894791.1| hypothetical protein Bphyt_1151 [Burkholderi... 303 2e-80 ref|YP_004227420.1| hypothetical protein BC1001_0908 [Burkholder... 300 2e-79 ref|YP_003906248.1| hypothetical protein BC1003_0973 [Burkholder... 294 1e-77 >ref|YP_003775670.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ63762.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 250 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 228/251 (90%), Positives = 234/251 (93%), Gaps = 1/251 (0%) Query: 15 MPINYLRRLTSPARTDLSNRHLGRSLAFIAGAVNAGGFLAVGQYTSHMSGIVSSLADNLV 74 MPI+YLRRLTSPARTDLSNRHLGRSLAFIAGAVNAGGFLAVGQYTSHMSGIVSSLADNLV Sbjct: 1 MPIDYLRRLTSPARTDLSNRHLGRSLAFIAGAVNAGGFLAVGQYTSHMSGIVSSLADNLV 60 Query: 75 LGETLLLVAGASALLSFLLGAACSAVMINWARRRGLHSEYAMPLMLEAMLLLCFGILGSN 134 LGETLLLV GASALLSFL GAACS VMINWARRR LHSEYAMPLMLEAMLLLCFGILGSN Sbjct: 61 LGETLLLVGGASALLSFLAGAACSTVMINWARRRSLHSEYAMPLMLEAMLLLCFGILGSN 120 Query: 135 LENHRLLFVPVTAALLCFVMGLQNAMISKISRSEIRTTHVTGLVTDIGIEIGKMCYWTLA 194 LENHR+LFVPVT ALLCFVMGLQNAMISKISRSEIRTTHVTGLVTDIGIEIGK+CYW+ A Sbjct: 121 LENHRVLFVPVTVALLCFVMGLQNAMISKISRSEIRTTHVTGLVTDIGIEIGKICYWSAA 180 Query: 195 PRQAHEAVTEDPVPGARRKFMLLSSLLLMFFLGGVTGAFGFKALGFLATMPLAAALFLLA 254 PRQ E EDPVP ARRKFMLL SLLLMFFLGGV GA GFK +GFLATMPLAA LFLLA Sbjct: 181 PRQPGEH-GEDPVPAARRKFMLLGSLLLMFFLGGVAGALGFKLVGFLATMPLAAGLFLLA 239 Query: 255 LVPMMDDLARN 265 LVPMMDDLAR+ Sbjct: 240 LVPMMDDLARS 250 >ref|ZP_02883033.1| protein of unknown function DUF1275 [Burkholderia graminis C4D1M] gb|EDT11317.1| protein of unknown function DUF1275 [Burkholderia graminis C4D1M] Length = 248 Score = 305 bits (781), Expect = 5e-81, Method: Composition-based stats. Identities = 168/248 (67%), Positives = 196/248 (79%), Gaps = 4/248 (1%) Query: 15 MPINYLRRLTSPARTDLSNRHLGRSLAFIAGAVNAGGFLAVGQYTSHMSGIVSSLADNLV 74 MPINYLR T+P RTD +NR LGRSLAF+AGA NAGGFLAVGQYTSHMSGIVSSLADN Sbjct: 1 MPINYLRGFTAPERTDATNRRLGRSLAFVAGAANAGGFLAVGQYTSHMSGIVSSLADNAA 60 Query: 75 LGETLLLVAGASALLSFLLGAACSAVMINWARRRGLHSEYAMPLMLEAMLLLCFGILGSN 134 LG+ L VAG S+LL+FL+GAA SAV+INW RRR L S YA PL +EA+LLLCFG +GSN Sbjct: 61 LGDASLFVAGLSSLLAFLMGAATSAVLINWGRRRRLRSVYATPLAIEAVLLLCFGFVGSN 120 Query: 135 LENHRLLFVPVTAALLCFVMGLQNAMISKISRSEIRTTHVTGLVTDIGIEIGKMCYWTLA 194 LE+HR+LFVP T +LCFVMGLQNAMI+KISR+EIRTTHVTGLVTDIGIE+GKM YW A Sbjct: 121 LEHHRVLFVPATVCMLCFVMGLQNAMITKISRAEIRTTHVTGLVTDIGIELGKMIYWNAA 180 Query: 195 PRQAHEAVTEDPVPGARRKFMLLSSLLLMFFLGGVTGAFGFKALGFLATMPLAAALFLLA 254 P E V R K +L+ SLLL F GG+ GA GFK +GF++T+PLA L LA Sbjct: 181 PAAGQEPA----VQADREKLILVGSLLLSFVAGGLAGAVGFKHMGFVSTLPLAIVLLTLA 236 Query: 255 LVPMMDDL 262 +VP++DD+ Sbjct: 237 VVPLVDDV 244 >ref|YP_001894791.1| hypothetical protein Bphyt_1151 [Burkholderia phytofirmans PsJN] gb|ACD15567.1| protein of unknown function DUF1275 [Burkholderia phytofirmans PsJN] Length = 248 Score = 303 bits (776), Expect = 2e-80, Method: Composition-based stats. Identities = 171/248 (68%), Positives = 197/248 (79%), Gaps = 5/248 (2%) Query: 15 MPINYLRRLTSPARTDLSNRHLGRSLAFIAGAVNAGGFLAVGQYTSHMSGIVSSLADNLV 74 MPINYLR T+P RTD++NR LGRSLAF+AGA NAGGFLAVGQYTSHMSGIVSSLADN V Sbjct: 1 MPINYLRGFTAPERTDVTNRRLGRSLAFVAGAANAGGFLAVGQYTSHMSGIVSSLADNAV 60 Query: 75 LGETLLLVAGASALLSFLLGAACSAVMINWARRRGLHSEYAMPLMLEAMLLLCFGILGSN 134 LGE L V+G S+L SFL+GAA SA++INW RRR LHS YA PL +EA+LLLCFG+LGSN Sbjct: 61 LGEAGLFVSGLSSLFSFLVGAAASAILINWGRRRNLHSIYATPLAIEAILLLCFGLLGSN 120 Query: 135 LENHRLLFVPVTAALLCFVMGLQNAMISKISRSEIRTTHVTGLVTDIGIEIGKMCYWTLA 194 LE+HR LFVP T +LCFVMGLQNAMI+KISRSEIRTTHVTGLVTD+GIE+GKM YW Sbjct: 121 LEHHRFLFVPATVCVLCFVMGLQNAMITKISRSEIRTTHVTGLVTDVGIELGKMLYWNSP 180 Query: 195 PRQAHEAVTEDPVPGARRKFMLLSSLLLMFFLGGVTGAFGFKALGFLATMPLAAALFLLA 254 AV D ++K LL SLLL F GGV GA GFK LGF+A++PLA L LA Sbjct: 181 SIAGEGAVRAD-----KQKLALLGSLLLSFIAGGVAGAVGFKYLGFIASVPLAIVLLTLA 235 Query: 255 LVPMMDDL 262 +VP++DD+ Sbjct: 236 VVPLVDDV 243 >ref|YP_004227420.1| hypothetical protein BC1001_0908 [Burkholderia sp. CCGE1001] gb|ADX54360.1| protein of unknown function DUF1275 [Burkholderia sp. CCGE1001] Length = 248 Score = 300 bits (767), Expect = 2e-79, Method: Composition-based stats. Identities = 168/248 (67%), Positives = 196/248 (79%), Gaps = 5/248 (2%) Query: 15 MPINYLRRLTSPARTDLSNRHLGRSLAFIAGAVNAGGFLAVGQYTSHMSGIVSSLADNLV 74 MPINYLR T+P RTD +NR LGRSLAF+AGA NAGGFLAVGQYTSHMSGIVSSLADN V Sbjct: 1 MPINYLRGFTAPERTDATNRRLGRSLAFVAGAANAGGFLAVGQYTSHMSGIVSSLADNAV 60 Query: 75 LGETLLLVAGASALLSFLLGAACSAVMINWARRRGLHSEYAMPLMLEAMLLLCFGILGSN 134 LG+ L AG S+LLSF++GAA SA++INW RRR L S YA PL +EA+LLLCFG++G+N Sbjct: 61 LGDVSLFFAGLSSLLSFVMGAAASAILINWGRRRELRSVYATPLAIEAVLLLCFGLVGAN 120 Query: 135 LENHRLLFVPVTAALLCFVMGLQNAMISKISRSEIRTTHVTGLVTDIGIEIGKMCYWTLA 194 LE HR+LFVPVT +LCFVMGLQNAMI+KISR+EIRTTHVTGLVTD+GIE+GKM YW Sbjct: 121 LEQHRVLFVPVTVCILCFVMGLQNAMITKISRAEIRTTHVTGLVTDVGIELGKMVYWNAR 180 Query: 195 PRQAHEAVTEDPVPGARRKFMLLSSLLLMFFLGGVTGAFGFKALGFLATMPLAAALFLLA 254 P E V D R K +LL SLLL F GG+ GA GFK LGF++T+PLA L LA Sbjct: 181 PAAGQELVQAD-----REKLVLLGSLLLSFVAGGLAGAVGFKHLGFVSTVPLAIVLLTLA 235 Query: 255 LVPMMDDL 262 VP++DD+ Sbjct: 236 AVPLVDDM 243 >ref|YP_003906248.1| hypothetical protein BC1003_0973 [Burkholderia sp. CCGE1003] gb|ADN56957.1| protein of unknown function DUF1275 [Burkholderia sp. CCGE1003] Length = 248 Score = 294 bits (752), Expect = 1e-77, Method: Composition-based stats. Identities = 164/248 (66%), Positives = 191/248 (77%), Gaps = 5/248 (2%) Query: 15 MPINYLRRLTSPARTDLSNRHLGRSLAFIAGAVNAGGFLAVGQYTSHMSGIVSSLADNLV 74 MPINYLR T+P RTD +NR LGRSLAF+AGA NAGGFLAVGQYTSHMSGIVSSLADN V Sbjct: 1 MPINYLRGFTAPERTDATNRRLGRSLAFVAGAANAGGFLAVGQYTSHMSGIVSSLADNAV 60 Query: 75 LGETLLLVAGASALLSFLLGAACSAVMINWARRRGLHSEYAMPLMLEAMLLLCFGILGSN 134 LG+ L +AG +LLSF++GAA SA++INW RRR L S YA PL +EA LLL FG++G+N Sbjct: 61 LGDASLFIAGLGSLLSFVMGAAASAILINWGRRRRLRSVYATPLAIEAALLLGFGLVGAN 120 Query: 135 LENHRLLFVPVTAALLCFVMGLQNAMISKISRSEIRTTHVTGLVTDIGIEIGKMCYWTLA 194 LE HR+LFVPVT +LCFVMGLQNAMI+KISR+EIRTTHVTGLVTD+GIE+GKM YW Sbjct: 121 LEQHRVLFVPVTVCMLCFVMGLQNAMITKISRAEIRTTHVTGLVTDVGIELGKMVYWNAR 180 Query: 195 PRQAHEAVTEDPVPGARRKFMLLSSLLLMFFLGGVTGAFGFKALGFLATMPLAAALFLLA 254 P V D R K +LL SLL F GG+ GA GFK LGF++T+PLA L LA Sbjct: 181 PVAGEGLVQAD-----REKLILLVSLLFSFVAGGLAGALGFKHLGFVSTVPLAIVLLTLA 235 Query: 255 LVPMMDDL 262 VP+ DD+ Sbjct: 236 AVPLFDDM 243