BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1652.p         (195 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_364487.1| hypothetical protein XCV2756 [Xanthomonas campe...    70   2e-10
ref|NP_642872.1| hypothetical protein XAC2557 [Xanthomonas axono...    62   3e-08
ref|YP_003773981.1| general stress protein [Herbaspirillum serop...    60   1e-07
ref|YP_001973814.1| hypothetical protein Smlt4140 [Stenotrophomo...    56   3e-06
ref|YP_412183.1| hypothetical protein Nmul_A1488 [Nitrosospira m...    56   3e-06

>ref|YP_364487.1| hypothetical protein XCV2756 [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 emb|CAJ24435.1| conserved hypothetical protein [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 142

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/69 (65%), Positives = 51/69 (73%), Gaps = 2/69 (2%)

Query: 80  KESHMANSQNP--GNSNRGFAAMDREKQRQIASMGGKAAHAKGAAHEFTSAEAREAGRKG 137
           +ES MAN  +   G SNRGFA+MD +KQR+IAS GGKAAH  G AHEFTS EAREAG+KG
Sbjct: 73  RESAMANQNDNKGGTSNRGFASMDEDKQREIASKGGKAAHESGNAHEFTSEEAREAGKKG 132

Query: 138 GLNSHGRKN 146
           G  S G  N
Sbjct: 133 GQASGGGNN 141


>ref|NP_642872.1| hypothetical protein XAC2557 [Xanthomonas axonopodis pv. citri str.
           306]
 gb|AAM37408.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 87

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 45/72 (62%), Positives = 52/72 (72%), Gaps = 2/72 (2%)

Query: 77  IQDKESHMANSQNP--GNSNRGFAAMDREKQRQIASMGGKAAHAKGAAHEFTSAEAREAG 134
           +  +ES MAN  +   G SNRGFA+MD +KQR+IAS GGKAAH  G AHEFTS EAREAG
Sbjct: 15  LTKRESAMANQNDNKGGTSNRGFASMDEDKQREIASKGGKAAHESGNAHEFTSQEAREAG 74

Query: 135 RKGGLNSHGRKN 146
           +KGG  S G  N
Sbjct: 75  KKGGQASGGGNN 86


>ref|YP_003773981.1| general stress protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ62073.1| general stress protein [Herbaspirillum seropedicae SmR1]
          Length = 69

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/59 (74%), Positives = 46/59 (77%)

Query: 84  MANSQNPGNSNRGFAAMDREKQRQIASMGGKAAHAKGAAHEFTSAEAREAGRKGGLNSH 142
           MAN      SNRGFA+MD  KQR+IAS GGKAAH KG AHEFTS EAREAGRKGG NSH
Sbjct: 1   MANQNQGSTSNRGFASMDENKQREIASQGGKAAHEKGTAHEFTSEEAREAGRKGGQNSH 59


>ref|YP_001973814.1| hypothetical protein Smlt4140 [Stenotrophomonas maltophilia K279a]
 emb|CAQ47531.1| conserved hypothetical protein [Stenotrophomonas maltophilia K279a]
          Length = 101

 Score = 56.2 bits (134), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/51 (72%), Positives = 44/51 (86%)

Query: 88  QNPGNSNRGFAAMDREKQRQIASMGGKAAHAKGAAHEFTSAEAREAGRKGG 138
           QNP +SNRGFA+MD++KQR IA+ GG+AAHA G AHEF+ AEAR AGRKGG
Sbjct: 4   QNPRSSNRGFASMDQDKQRAIAAKGGRAAHASGNAHEFSPAEARAAGRKGG 54


>ref|YP_412183.1| hypothetical protein Nmul_A1488 [Nitrosospira multiformis ATCC
           25196]
 gb|ABB74791.1| conserved hypothetical protein [Nitrosospira multiformis ATCC
           25196]
          Length = 77

 Score = 55.8 bits (133), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/58 (70%), Positives = 47/58 (81%)

Query: 85  ANSQNPGNSNRGFAAMDREKQRQIASMGGKAAHAKGAAHEFTSAEAREAGRKGGLNSH 142
           + S +   S RGFA+MD+EKQR+IAS GGKAAHAKG AHEF+S EAREAGRKGG  SH
Sbjct: 4   SKSGSGNTSKRGFASMDQEKQREIASKGGKAAHAKGTAHEFSSEEAREAGRKGGEASH 61