BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1651.p (249 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775667.1| hypothetical protein Hsero_2260 [Herbaspiril... 341 5e-92 ref|YP_004682935.1| hypothetical protein CNE_BB2p02900 [Cupriavi... 196 2e-48 ref|YP_001796004.1| conserved hypothetical protein; putative DNA... 193 2e-47 ref|YP_002235443.1| hypothetical protein pBCA006 [Burkholderia c... 187 1e-45 ref|YP_001109807.1| hypothetical protein Bcep1808_7144 [Burkhold... 186 3e-45 >ref|YP_003775667.1| hypothetical protein Hsero_2260 [Herbaspirillum seropedicae SmR1] gb|ADJ63759.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1] Length = 287 Score = 341 bits (875), Expect = 5e-92, Method: Composition-based stats. Identities = 206/249 (82%), Positives = 219/249 (87%), Gaps = 1/249 (0%) Query: 1 MLTSSSPVPRPEIIHPSLWLASQLARGGARGVASGFEALDAELPERGWPPGVLIELLLPQ 60 ML+ SSP PE IHP+LWLASQLARG RGV+SGFEALDAELP RGWP GVLIELLLPQ Sbjct: 40 MLSPSSPARTPETIHPALWLASQLARGNGRGVSSGFEALDAELPGRGWPTGVLIELLLPQ 99 Query: 61 DGIGELRLLRPVLARAPATARRPPQAGRIALLQAPHQVNAPGWAHMGVDASRLLQLQADH 120 DG+GELRLLRP+LA+ P R +GRIALLQAPH +NAPGWA MGV A+RLLQLQAD Sbjct: 100 DGVGELRLLRPLLAQ-PQRLRPGAPSGRIALLQAPHAINAPGWAAMGVPATRLLQLQADT 158 Query: 121 AADACWAAEQVLRADSCQALLMWQPRLRKGDHDLLRRLHVAAQAGQTLFFMLRPLSCARE 180 DACWAAEQVLRADSCQALLMWQ RLRKGDHDLLRRLHVAAQAGQTLFFMLRPL+CARE Sbjct: 159 PVDACWAAEQVLRADSCQALLMWQARLRKGDHDLLRRLHVAAQAGQTLFFMLRPLACARE 218 Query: 181 PSPAPLRLTLKSARDGLEIGFLKRRGPLREQSLFLPLLPSPNLQRHVTPVDRRTPATAAA 240 SPAPLRLTL+ A GL+IGFLKRRGPLRE SLFLPL PSPNLQRHV+PVDRRTPATAAA Sbjct: 219 ASPAPLRLTLRPAPGGLDIGFLKRRGPLREHSLFLPLTPSPNLQRHVSPVDRRTPATAAA 278 Query: 241 GSLPSELAG 249 GSLPSELAG Sbjct: 279 GSLPSELAG 287 >ref|YP_004682935.1| hypothetical protein CNE_BB2p02900 [Cupriavidus necator N-1] gb|AEI83087.1| hypothetical protein CNE_BB2p02900 [Cupriavidus necator N-1] Length = 234 Score = 196 bits (499), Expect = 2e-48, Method: Composition-based stats. Identities = 131/238 (55%), Positives = 160/238 (67%), Gaps = 12/238 (5%) Query: 11 PEIIHPSLWLASQLARGGARGVASGFEALDAELPERGWPPGVLIELLLPQDGIGELRLLR 70 PE IHPSLWLASQLARG AR V +G+ +LD ELP GWP L ELL Q GIGELRLLR Sbjct: 6 PETIHPSLWLASQLARGNARTVPTGYPSLDKELPGGGWPISCLTELLQRQPGIGELRLLR 65 Query: 71 PVLARAPATARRPPQAGRIALLQAPHQVNAPGWAHMGVDASRLLQLQADHAADACWAAEQ 130 P L A + RP +ALL PH A A+ GV ++++L ++A H ADA WAAEQ Sbjct: 66 PALV---ARSNRP-----VALLAPPHAPQALALANWGVPSAQILWVEARHTADALWAAEQ 117 Query: 131 VLRADSCQALLMWQPRLRKGDHDLLRRLHVAAQAGQTLFFMLRPLSCAREPSPAPLRLTL 190 +LRA +C AL+ WQ LR +D LRRLH+AAQA LFF++RP +CA + SPAPLRLTL Sbjct: 118 ILRAGTCGALVFWQSHLR---NDALRRLHLAAQASDVLFFVVRPTACAHDASPAPLRLTL 174 Query: 191 KSARDGLEIGFLKRRGPLREQSLFLPLLPSPN-LQRHVTPVDRRTPATAAAGSLPSEL 247 + A DG+ + F+KRRGP +E L + L PSP L RH PVD TP A S+P+EL Sbjct: 175 EPASDGIRVQFVKRRGPQQESPLNVALQPSPILLYRHAAPVDLPTPVIPAPRSIPAEL 232 >ref|YP_001796004.1| conserved hypothetical protein; putative DNA recombinase; putative partial gene [Cupriavidus taiwanensis] emb|CAP63797.1| conserved hypothetical protein; putative DNA recombinase; putative partial gene [Cupriavidus taiwanensis LMG 19424] Length = 235 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 127/238 (53%), Positives = 154/238 (64%), Gaps = 12/238 (5%) Query: 11 PEIIHPSLWLASQLARGGARGVASGFEALDAELPERGWPPGVLIELLLPQDGIGELRLLR 70 PE IHPSLW+ASQLAR AR ++G+ ALD ELP GWP G +ELLL Q GIGELRLLR Sbjct: 6 PETIHPSLWVASQLARDNARTASTGYTALDKELPGGGWPIGSQVELLLQQPGIGELRLLR 65 Query: 71 PVLARAPATARRPPQAGRIALLQAPHQVNAPGWAHMGVDASRLLQLQADHAADACWAAEQ 130 P L A + RP I LL PH A G+ RLL + A AD WAAEQ Sbjct: 66 PTLV---ARSGRP-----IVLLAPPHAPQALSLVSWGISPERLLWIDAQRTADVLWAAEQ 117 Query: 131 VLRADSCQALLMWQPRLRKGDHDLLRRLHVAAQAGQTLFFMLRPLSCAREPSPAPLRLTL 190 LRA +C AL++WQ LR +D LRRLH+AAQ TLFF++RP +CAR+ SP+PLRL L Sbjct: 118 TLRAGTCGALILWQSHLR---NDALRRLHLAAQTSDTLFFVVRPAACARDASPSPLRLAL 174 Query: 191 KSARDGLEIGFLKRRGPLREQSLFLPLLPSPN-LQRHVTPVDRRTPATAAAGSLPSEL 247 + A G+ + F+KRRGP +E L + L PSP L RH PVD TPA A + SLP++L Sbjct: 175 EPAVGGVTVNFVKRRGPQQETPLLVALEPSPILLYRHAAPVDLPTPAVAPSRSLPADL 232 >ref|YP_002235443.1| hypothetical protein pBCA006 [Burkholderia cenocepacia J2315] emb|CAR57713.1| hypothetical protein pBCA006 [Burkholderia cenocepacia J2315] Length = 238 Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 127/239 (53%), Positives = 157/239 (65%), Gaps = 11/239 (4%) Query: 11 PEIIHPSLWLASQLARGGARGVASGFEALDAELPERGWPPGVLIELLLPQDGIGELRLLR 70 PE IHP+LW ASQLAR RGV +G L AELP GWP G LIELL PQ GIGELRLL Sbjct: 8 PEAIHPALWRASQLARPSVRGVDTGHLELTAELPGGGWPAGALIELLAPQPGIGELRLLA 67 Query: 71 PVLARAPATARRPPQAGRIALLQAPHQVNAPGWAHMGVDASRLLQLQADHAADACWAAEQ 130 PVLAR TA +P + L+Q PH + A+ G+D S + L A ADA WAAEQ Sbjct: 68 PVLAR---TAGKP-----VMLIQPPHALQPLALAYWGIDPSGFVTLPAPRTADALWAAEQ 119 Query: 131 VLRADSCQALLMWQPRLRKGDHDLLRRLHVAAQAGQTLFFMLRPLSCAREPSPAPLRLTL 190 LRA +C A+L+WQ +R D LRRL++AAQ+GQ LF++ RP++ AR+ SPAPLRL L Sbjct: 120 ALRAGTCAAVLLWQSHVRA---DALRRLNLAAQSGQALFYLFRPVAAARDASPAPLRLAL 176 Query: 191 KSARDGLEIGFLKRRGPLREQSLFLPLLPSPNLQRHVTPVDRRTPATAAAGSLPSELAG 249 RDG+++ FLKRRGP R+ LF+PL PSP L +DRR A S+P+ +AG Sbjct: 177 APKRDGIDVTFLKRRGPARDTPLFVPLSPSPILLNRHASLDRRASAAPQPRSVPATIAG 235 >ref|YP_001109807.1| hypothetical protein Bcep1808_7144 [Burkholderia vietnamiensis G4] gb|ABO60026.1| conserved hypothetical protein [Burkholderia vietnamiensis G4] Length = 238 Score = 186 bits (471), Expect = 3e-45, Method: Composition-based stats. Identities = 127/239 (53%), Positives = 155/239 (64%), Gaps = 11/239 (4%) Query: 11 PEIIHPSLWLASQLARGGARGVASGFEALDAELPERGWPPGVLIELLLPQDGIGELRLLR 70 PE IHPSLW ASQLAR ARG+ +G L AELP GWP LIELL PQ GIGELRLL Sbjct: 8 PEQIHPSLWRASQLARPSARGIDTGHAVLSAELPGGGWPASALIELLAPQPGIGELRLLA 67 Query: 71 PVLARAPATARRPPQAGRIALLQAPHQVNAPGWAHMGVDASRLLQLQADHAADACWAAEQ 130 PVLARA A RP + L+Q PH + A+ G+D S + L A ADA WAA+Q Sbjct: 68 PVLARA---ASRP-----VMLIQPPHALQPLALAYWGIDPSGFVTLAAPRTADALWAADQ 119 Query: 131 VLRADSCQALLMWQPRLRKGDHDLLRRLHVAAQAGQTLFFMLRPLSCAREPSPAPLRLTL 190 LRA +C A+L+WQ +R D LRRL++AAQ G LFF+ RP + AR+PSPAPLRL L Sbjct: 120 ALRAGTCAAVLLWQQHVRA---DALRRLNLAAQNGSALFFLFRPAAAARDPSPAPLRLAL 176 Query: 191 KSARDGLEIGFLKRRGPLREQSLFLPLLPSPNLQRHVTPVDRRTPATAAAGSLPSELAG 249 RDG+++ FLKRRG +R+ LF+PL PSP L +DRR A S+P+ +AG Sbjct: 177 APKRDGVDVTFLKRRGLVRDTPLFVPLSPSPILLNRHASLDRRASAAPQPRSVPAAIAG 235