BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1650.p (494 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775666.1| DNA polymerase, Y family protein [Herbaspiri... 659 0.0 ref|YP_003604848.1| hypothetical protein BC1002_1253 [Burkholder... 473 e-131 ref|ZP_02881490.1| conserved hypothetical protein [Burkholderia ... 460 e-127 ref|ZP_06844008.1| conserved hypothetical protein [Burkholderia ... 454 e-125 ref|YP_001858196.1| hypothetical protein Bphy_1971 [Burkholderia... 450 e-124 >ref|YP_003775666.1| DNA polymerase, Y family protein [Herbaspirillum seropedicae SmR1] gb|ADJ63758.1| DNA polymerase, Y family protein [Herbaspirillum seropedicae SmR1] Length = 466 Score = 659 bits (1700), Expect = 0.0, Method: Composition-based stats. Identities = 370/466 (79%), Positives = 408/466 (87%) Query: 29 VVLEHARVIAASPGAREAGVRVGMTRGGVLALLPQAPLHDRAPEREAQQRFAVATALLQY 88 +V E RV A S AR GV GM RGGV L P+A L +R P RE A ALLQY Sbjct: 1 MVFERERVAALSAAARACGVHEGMRRGGVQLLAPEAQLQERDPAREQAALEQTALALLQY 60 Query: 89 TPQVTLAEEACILLEVGASLRLFGGIRALCRKIRVTIARMGLSATLSCAVTATGSWLLAR 148 TPQV+LA +AC+LLEV ASLRLFGGIRALCRK+RV+I+R+GLSATLSCAVTATG+W+LAR Sbjct: 61 TPQVSLAPQACVLLEVSASLRLFGGIRALCRKVRVSISRLGLSATLSCAVTATGAWMLAR 120 Query: 149 YGYVRTLSHRSLQRRLDRLPVVLLTAARAHLEWLHGLGCRQLGQVVILPRAGLQRRCGKD 208 YG VRT+ RSL+RRLDRLPVVLL+AA+AHLEWLHGLGCRQLGQ+ LPRAGLQRRCGK Sbjct: 121 YGDVRTVRERSLRRRLDRLPVVLLSAAQAHLEWLHGLGCRQLGQLRALPRAGLQRRCGKA 180 Query: 209 LLAMLDRAYGAAPEVHDWIVAPPTFQARVELPDRIEHTDILAAYAQGLLAQLAGWLTARQ 268 LL ML+ AYG APEVHDW+VAPP FQARVELPDRIE TDIL AYAQ LL QLAGWLTARQ Sbjct: 181 LLDMLEHAYGEAPEVHDWVVAPPVFQARVELPDRIEQTDILTAYAQALLTQLAGWLTARQ 240 Query: 269 LAIKKLRLWLEHERGRQAVAPTELQIALTVPAWQEDHLHTLVKEKLARSSLPAPAIALGL 328 LA+K+LRLWLEHERGRQAVAPT+L+IAL+ PAWQEDHL++LVKEKLARS+LPAPAIALGL Sbjct: 241 LAVKQLRLWLEHERGRQAVAPTDLRIALSAPAWQEDHLYSLVKEKLARSTLPAPAIALGL 300 Query: 329 AADELENQQAASEMLFPEPGGSAEDHQRLLELLVARLGADKVQQAAPRADHRPEVANRWC 388 AA+ELE +Q AS+MLFPEPGGSAEDHQRLLELLVARLGADKV+QAAPRAD+RPE+ANRWC Sbjct: 301 AAEELERRQPASDMLFPEPGGSAEDHQRLLELLVARLGADKVRQAAPRADYRPELANRWC 360 Query: 389 SVMQSPASLPASLTTDAARLPPRPLWLLAEPLPLRMQQHKPFYRSALEFTSPPERIEAGW 448 SVMQ ASLPA L+TDAARLPPRPLWLL EP+PLR+ QHKPFYR+ LEFTSPPERIEAGW Sbjct: 361 SVMQPAASLPAPLSTDAARLPPRPLWLLDEPVPLRVLQHKPFYRTPLEFTSPPERIEAGW 420 Query: 449 WEGRPLTRDYFTARDASHAYYWIFRQWRGGEWSDEEPQWFLHGLFG 494 WEGRP TRDYFT RDA HAYYWIFRQW GGE +EEPQWFLHGLFG Sbjct: 421 WEGRPSTRDYFTVRDAQHAYYWIFRQWHGGECPEEEPQWFLHGLFG 466 >ref|YP_003604848.1| hypothetical protein BC1002_1253 [Burkholderia sp. CCGE1002] gb|ADG15337.1| conserved hypothetical protein [Burkholderia sp. CCGE1002] Length = 489 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 257/495 (51%), Positives = 334/495 (67%), Gaps = 12/495 (2%) Query: 4 LWIAVHLPLLPLEVFRPNWLDEAA--AVVLEHARVIAASPGAREAGVRVGMTRGGVLALL 61 +++AVHLP LPLEVFRP W E A VLE +V+ A P AR AGVR GM RGGVL L Sbjct: 3 VFLAVHLPKLPLEVFRPKWSPEPAHGCAVLEKDKVVMADPAARSAGVRAGMKRGGVLTLS 62 Query: 62 PQAPLHDRAPEREAQQRFAVATALLQYTPQVTLAEEACILLEVGASLRLFGGIRALCRKI 121 P+ +++R REA V AL++++P+V L +EA +++E+GASLRLFGG+ ALCR Sbjct: 63 PETEMYERDSGREAAAHREVGIALMRFSPEVALLDEATVVVEIGASLRLFGGLLALCRDA 122 Query: 122 RVTIARMGLSATLSCAVTATGSWLLARYGYVRTLSHRSLQRRLDRLPVVLLTAARAHLEW 181 + + +G +A +S A T G+WLLA++G R L SL++RL LP++ + R +W Sbjct: 123 KAILDALGFTARISAAPTGQGAWLLAKFGNRRVLKLASLEQRLCALPMLAVPEVRPFADW 182 Query: 182 LHGLGCRQLGQVVILPRAGLQRRCGKDLLAMLDRAYGAAPEVHDWIVAPPTFQARVELPD 241 GLGC ++ + LPRAGLQRRCG+ LL LDRA+G APE+ DW+ PPTF AR+E+PD Sbjct: 183 FTGLGCERIADLRRLPRAGLQRRCGEHLLDSLDRAFGTAPELFDWLELPPTFSARIEMPD 242 Query: 242 RIEHTDILAAYAQGLLAQLAGWLTARQLAIKKLRLWLEHERGRQAVAPTELQIALTVPAW 301 R+EH D AQ L+ QL GWL A+QLA+ +RL LEHERGR A+ PT + IAL P W Sbjct: 243 RLEHADGAVFGAQRLVVQLCGWLCAKQLAVSGIRLSLEHERGRDAIEPTTIDIALGEPTW 302 Query: 302 QEDHLHTLVKEKLARSSLPAPAIALGLAADELENQQAASEMLFPEPGGSAEDHQRLLELL 361 +E+HL L+KE+L R L AP IAL L A +E+ AS+ LFPEPGGS EDH+RLLELL Sbjct: 303 REEHLMRLLKERLHRIELAAPVIALRLDASNVESAAPASDTLFPEPGGSQEDHERLLELL 362 Query: 362 VARLGADKVQQAAPRADHRPEVANRWCSVMQ--SPASLPASLTTDAARLPPRPLWLLAEP 419 VARLG + V + AP ADHRPE+ANRW V Q P LP +L PRP W+L P Sbjct: 363 VARLGEENVLKPAPSADHRPEIANRWLPVSQPVKPEPLPQNL--------PRPTWMLDTP 414 Query: 420 LPLRMQQHKPFYRSALEFTSPPERIEAGWWEGRPLTRDYFTARDASHAYYWIFRQWRGGE 479 + L M+QH+PFY S L SP ERIE+GW++G +TRDYF A+ + YWI+R+ Sbjct: 415 VRLLMRQHRPFYGSPLRMVSPGERIESGWFDGELVTRDYFVAQADDQSCYWIYRERVSSR 474 Query: 480 WSDEEPQWFLHGLFG 494 ++EE +WFLHGLFG Sbjct: 475 DAEEEQRWFLHGLFG 489 >ref|ZP_02881490.1| conserved hypothetical protein [Burkholderia graminis C4D1M] gb|EDT12919.1| conserved hypothetical protein [Burkholderia graminis C4D1M] Length = 482 Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats. Identities = 255/490 (52%), Positives = 327/490 (66%), Gaps = 16/490 (3%) Query: 13 LPLEVFRPNWLDEA--AAVVLEHARVIAASPGAREAGVRVGMTRGGVLALLPQAPLHDRA 70 +PLEVFRP W E +VVLE +V+ A AR AGVR+GM RGGVL L P +H+R Sbjct: 1 MPLEVFRPRWSPEPLHGSVVLEKDKVVIADSVARAAGVRLGMKRGGVLTLSPDTEMHERD 60 Query: 71 PEREAQQRFAVATALLQYTPQVTLAEEACILLEVGASLRLFGGIRALCRKIRVTIARMGL 130 RE + V AL++++P+VTL +EA +++EVGASLRLFGG+ ALCR+ + +A +GL Sbjct: 61 FARERAVQRDVGIALMRFSPEVTLLDEATMVVEVGASLRLFGGLLALCREAKALLATLGL 120 Query: 131 SATLSCAVTATGSWLLARY----GYVRTLSHRSLQRRLDRLPVVLLTAARAHLEWLHGLG 186 +A +S A T G+WLLARY G R L +L++RL LP+V + R +W GLG Sbjct: 121 TARISAAPTGQGAWLLARYAKGHGARRVLKLSTLEQRLASLPMVAVPEVRQFADWFSGLG 180 Query: 187 CRQLGQVVILPRAGLQRRCGKDLLAMLDRAYGAAPEVHDWIVAPPTFQARVELPDRIEHT 246 C + + LPRAGLQRRCG+ LL LDRA+G APE+ DW+ PPTF AR+E+PDR+EH Sbjct: 181 CETIADIRRLPRAGLQRRCGEHLLDSLDRAFGTAPELFDWLELPPTFSARIEMPDRLEHA 240 Query: 247 DILAAYAQGLLAQLAGWLTARQLAIKKLRLWLEHERGRQAVAPTELQIALTVPAWQEDHL 306 D A L+ QL GWL A+QLA+ +RL LEHERGR A+ PT + IAL P W+E+HL Sbjct: 241 DGAVFGAHRLIVQLCGWLCAKQLAVSAVRLSLEHERGRDAIEPTSIDIALGEPTWREEHL 300 Query: 307 HTLVKEKLARSSLPAPAIALGLAADELENQQAASEMLFPEPGGSAEDHQRLLELLVARLG 366 L+KE+L R L AP IAL L A ++E+ AS+ LFPEPGGS EDH RLLELLVARLG Sbjct: 301 LRLLKERLHRIELTAPVIALRLDASKVESAAPASDTLFPEPGGSKEDHARLLELLVARLG 360 Query: 367 ADKVQQAAPRADHRPEVANRWCSVMQS--PASLPASLTTDAARLPPRPLWLLAEPLPLRM 424 D V + AP ADHRPEVAN W V Q+ P +P L PRP W+L P+ L M Sbjct: 361 EDNVLRPAPSADHRPEVANSWVPVTQTAKPVVIPEGL--------PRPTWMLDTPVRLLM 412 Query: 425 QQHKPFYRSALEFTSPPERIEAGWWEGRPLTRDYFTARDASHAYYWIFRQWRGGEWSDEE 484 +QH+PFY S L SP ERIEAGW++G +TRDYF A+ + YWI+R+ ++E+ Sbjct: 413 RQHRPFYGSPLRMVSPGERIEAGWFDGELVTRDYFVAQADDQSCYWIYRERVSSRDAEED 472 Query: 485 PQWFLHGLFG 494 +WFLHGLFG Sbjct: 473 QRWFLHGLFG 482 >ref|ZP_06844008.1| conserved hypothetical protein [Burkholderia sp. Ch1-1] gb|EFG68349.1| conserved hypothetical protein [Burkholderia sp. Ch1-1] Length = 489 Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 250/495 (50%), Positives = 337/495 (68%), Gaps = 12/495 (2%) Query: 4 LWIAVHLPLLPLEVFRPNWLDEAA--AVVLEHARVIAASPGAREAGVRVGMTRGGVLALL 61 +++AVHLP L LEVFRP WL E A VVL+ +V+ A AR AGVRVGM RGGVL L Sbjct: 3 VFLAVHLPRLQLEVFRPKWLPEPAHGCVVLDRDKVLIADGVARSAGVRVGMKRGGVLTLA 62 Query: 62 PQAPLHDRAPEREAQQRFAVATALLQYTPQVTLAEEACILLEVGASLRLFGGIRALCRKI 121 P+ +++R P RE + VA AL++++P V + +EA +++++GASLRLFGG+ A+CR+ Sbjct: 63 PEVEMYERDPRREYGAQREVAIALMKFSPDVAMLDEAVVVVDIGASLRLFGGLLAVCRQA 122 Query: 122 RVTIARMGLSATLSCAVTATGSWLLARYGYVRTLSHRSLQRRLDRLPVVLLTAARAHLEW 181 + + +GL+A +S A T G+WLLA++ +R L SL+R+L LP++ + R +W Sbjct: 123 KAILEAIGLTARISAAPTGQGAWLLAKHRNLRVLKVDSLERQLSALPLLSVPEVRPFADW 182 Query: 182 LHGLGCRQLGQVVILPRAGLQRRCGKDLLAMLDRAYGAAPEVHDWIVAPPTFQARVELPD 241 GLGC + V LPRAGLQRRCG+ LL LDRA+G APE+ DW+ PPTF AR+E+PD Sbjct: 183 FMGLGCETIADVRRLPRAGLQRRCGEHLLDSLDRAFGTAPELFDWLELPPTFSARIEMPD 242 Query: 242 RIEHTDILAAYAQGLLAQLAGWLTARQLAIKKLRLWLEHERGRQAVAPTELQIALTVPAW 301 RIEH + A L+ QL GWL A+QLA+ L LEHERGRQA+ PT ++IAL P W Sbjct: 243 RIEHAEAALFGAHRLVVQLCGWLCAKQLALTGATLLLEHERGRQAIEPTAIEIALGEPTW 302 Query: 302 QEDHLHTLVKEKLARSSLPAPAIALGLAADELENQQAASEMLFPEPGGSAEDHQRLLELL 361 +E+HL L++E+L RS L AP IAL L A ++ AS+ LFPEPGG+AEDH RL+ELL Sbjct: 303 REEHLVRLIRERLGRSELTAPVIALRLDASSVQPAVPASDTLFPEPGGTAEDHTRLVELL 362 Query: 362 VARLGADKVQQAAPRADHRPEVANRWCSVMQSPAS--LPASLTTDAARLPPRPLWLLAEP 419 VARLG + V + AP AD+RPE+ANRW V + S LP L PRP WLLA+P Sbjct: 363 VARLGEENVLRPAPTADYRPEIANRWVPVASASKSTVLPEGL--------PRPTWLLAKP 414 Query: 420 LPLRMQQHKPFYRSALEFTSPPERIEAGWWEGRPLTRDYFTARDASHAYYWIFRQWRGGE 479 + L M++H+PFY S L SP ERIEAGW++G +TRDYF A+ + +WI+R+ Sbjct: 415 VRLLMRKHRPFYGSPLRMVSPGERIEAGWFDGELVTRDYFVAQGEDQSCFWIYRERVSSR 474 Query: 480 WSDEEPQWFLHGLFG 494 ++++ +WFLHGLFG Sbjct: 475 DAEDDQRWFLHGLFG 489 >ref|YP_001858196.1| hypothetical protein Bphy_1971 [Burkholderia phymatum STM815] gb|ACC71150.1| conserved hypothetical protein [Burkholderia phymatum STM815] Length = 489 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 247/495 (49%), Positives = 332/495 (67%), Gaps = 12/495 (2%) Query: 4 LWIAVHLPLLPLEVFRPNWLDEA--AAVVLEHARVIAASPGAREAGVRVGMTRGGVLALL 61 +++AVHLP LPLEVFRP WL E VLE +V A AR AGVR+GM RGGVL L Sbjct: 3 VFLAVHLPKLPLEVFRPRWLPEPVHGCAVLEKDKVAIADGAARAAGVRLGMKRGGVLTLS 62 Query: 62 PQAPLHDRAPEREAQQRFAVATALLQYTPQVTLAEEACILLEVGASLRLFGGIRALCRKI 121 P+ +++R RE + V AL++++P V L +EA +L+EVG S+RLFGG+ +LCR+ Sbjct: 63 PETAMYERDIARENATQREVGIALMKFSPDVALHDEATVLVEVGGSVRLFGGLLSLCRQA 122 Query: 122 RVTIARMGLSATLSCAVTATGSWLLARYGYVRTLSHRSLQRRLDRLPVVLLTAARAHLEW 181 + + +GL+A +S A T G+WLLA++G R L SL+R L+ LP++ + R ++W Sbjct: 123 KAILDALGLTARISAAPTGQGAWLLAKHGNRRVLQLASLERVLEPLPMLAVPEIRPFVDW 182 Query: 182 LHGLGCRQLGQVVILPRAGLQRRCGKDLLAMLDRAYGAAPEVHDWIVAPPTFQARVELPD 241 GLGC + V LPRAGLQRRCG+ LL LDRA+G APE+ DW+ PPTF AR+ELPD Sbjct: 183 FGGLGCESIADVRRLPRAGLQRRCGEHLLDSLDRAFGTAPELFDWLQLPPTFSARLELPD 242 Query: 242 RIEHTDILAAYAQGLLAQLAGWLTARQLAIKKLRLWLEHERGRQAVAPTELQIALTVPAW 301 R+EH D A L+ QL GWL A+QLA+ + L EHERGR+A+APT + IAL AW Sbjct: 243 RLEHADGAVFAAHRLIVQLCGWLCAKQLAVTAITLSFEHERGREAIAPTSIDIALGEAAW 302 Query: 302 QEDHLHTLVKEKLARSSLPAPAIALGLAADELENQQAASEMLFPEPGGSAEDHQRLLELL 361 +EDHL LVKE+L R +L APAIAL L A +++ + A++ LFP+PGGS DH RL+ELL Sbjct: 303 REDHLLRLVKERLHRLTLDAPAIALRLDASKVDTAEPATDQLFPQPGGSPADHARLIELL 362 Query: 362 VARLGADKVQQAAPRADHRPEVANRWCSV--MQSPASLPASLTTDAARLPPRPLWLLAEP 419 +AR G + V + AP AD+RPE+ANRW + + LP L PRP W+LA P Sbjct: 363 IARNGEENVLRPAPTADYRPEIANRWVPMNHAEKKMHLPKGL--------PRPTWMLATP 414 Query: 420 LPLRMQQHKPFYRSALEFTSPPERIEAGWWEGRPLTRDYFTARDASHAYYWIFRQWRGGE 479 + L M++H+PFY S L+ SP ERIEAGW++G +TRDYF + + YW++R+ Sbjct: 415 VRLLMREHRPFYGSPLKIASPGERIEAGWFDGVLVTRDYFVMQGEDRSCYWVYRERVSSR 474 Query: 480 WSDEEPQWFLHGLFG 494 ++EEP+WFLHGLFG Sbjct: 475 DAEEEPRWFLHGLFG 489