BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1649.p (296 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775665.1| DNA polymerase III subunit alpha [Herbaspiri... 481 e-134 ref|ZP_02881491.1| DNA polymerase III, alpha subunit [Burkholder... 309 3e-82 ref|YP_003907290.1| DNA polymerase III subunit alpha [Burkholder... 304 1e-80 ref|YP_004753270.1| DNA polymerase III subunit alpha [Collimonas... 300 2e-79 ref|ZP_03264505.1| DNA polymerase III, alpha subunit [Burkholder... 298 6e-79 >ref|YP_003775665.1| DNA polymerase III subunit alpha [Herbaspirillum seropedicae SmR1] gb|ADJ63757.1| DNA polymerase III, alpha subunit protein [Herbaspirillum seropedicae SmR1] Length = 942 Score = 481 bits (1238), Expect = e-134, Method: Composition-based stats. Identities = 246/282 (87%), Positives = 264/282 (93%) Query: 12 TGLPDYAELYCRTNFSFLQGASHAQELVDRAIELGYRALAITDECTMAGVVRAHAAWMEQ 71 T LP+YAELYCR+NFSFLQGASHA ELV RAI L YRALAITDECT+AGVVRA+AAW EQ Sbjct: 3 TTLPEYAELYCRSNFSFLQGASHAHELVQRAIALDYRALAITDECTLAGVVRAYAAWKEQ 62 Query: 72 VNRGKAKDFKLLIGSCFRFTALKDDPAHPLAKMTLVGLARNREGYGNLCELITLARTRAE 131 ++G+ +DFKL+IGSCFRFT L+D+PAHPLA +TLV LARNREGYGNL ELITLARTRA Sbjct: 63 FDKGRTQDFKLIIGSCFRFTGLEDEPAHPLAALTLVALARNREGYGNLSELITLARTRAA 122 Query: 132 KGSYLLSPEDLSQPPPALSHLRALPDCQLILVPDYPADEETLDAQLRWFAPLAPGRSWVG 191 KGSYLL PEDLS PPPALSHLRALPDCQLILVPDYPADEETLDAQLRWFAPLAPGRSWVG Sbjct: 123 KGSYLLHPEDLSGPPPALSHLRALPDCQLILVPDYPADEETLDAQLRWFAPLAPGRSWVG 182 Query: 192 MTRLYRPLDDLHRAAIDAAARLHGLPLAAVGDVQMHQRSRKYLQDVVTAIRVGKPVQECG 251 +TRLYRPLDDLHRAA++AA R HGLPLAAVGDVQMHQRSRKYLQDVVTAIR+G+PVQECG Sbjct: 183 ITRLYRPLDDLHRAALEAATRRHGLPLAAVGDVQMHQRSRKYLQDVVTAIRLGQPVQECG 242 Query: 252 LSLAPNAEQHLRSRVRLGMVHTPATLAQTLAIAADCRFSLAE 293 +LAPNAEQHLRSRVRLGMVHTPATLAQTLAIAADCRFSLAE Sbjct: 243 HALAPNAEQHLRSRVRLGMVHTPATLAQTLAIAADCRFSLAE 284 >ref|ZP_02881491.1| DNA polymerase III, alpha subunit [Burkholderia graminis C4D1M] gb|EDT12920.1| DNA polymerase III, alpha subunit [Burkholderia graminis C4D1M] Length = 1049 Score = 309 bits (792), Expect = 3e-82, Method: Composition-based stats. Identities = 161/282 (57%), Positives = 195/282 (69%), Gaps = 12/282 (4%) Query: 12 TGLPDYAELYCRTNFSFLQGASHAQELVDRAIELGYRALAITDECTMAGVVRAHAAWMEQ 71 T LP YAEL+C +NFSFL+GASHA+EL +RA +LGY ALAITDEC++AGVVRAH A Sbjct: 6 TMLPAYAELFCLSNFSFLRGASHAEELAERAAQLGYSALAITDECSLAGVVRAHVA---- 61 Query: 72 VNRGKAKDFKLLIGSCFRFTALKDDPAHPLAKMTLVGLARNREGYGNLCELITLARTRAE 131 K ++GS FR PA L+ LARNREGYGNL ELITLARTRA Sbjct: 62 ---AKEAKLPFIVGSYFRLVNADGSPA-----FGLILLARNREGYGNLSELITLARTRAP 113 Query: 132 KGSYLLSPEDLSQPPPALSHLRALPDCQLILVPDYPADEETLDAQLRWFAPLAPGRSWVG 191 KG Y L+P+DLS+P HL +PDC ILVP +PA E+ LDAQ+ W PGR+WVG Sbjct: 114 KGEYRLTPQDLSRPDKEYRHLLGVPDCLAILVPSFPAKEDVLDAQVEWLDETFPGRAWVG 173 Query: 192 MTRLYRPLDDLHRAAIDAAARLHGLPLAAVGDVQMHQRSRKYLQDVVTAIRVGKPVQECG 251 + R +DD+HR A++ AR +P+ A+G+V MH RSRK LQD +TAIRVGKPV ECG Sbjct: 174 LVLHQRAMDDIHRGAVEFVARNRDVPVVALGEVLMHVRSRKPLQDTITAIRVGKPVHECG 233 Query: 252 LSLAPNAEQHLRSRVRLGMVHTPATLAQTLAIAADCRFSLAE 293 LAPNAEQHLRSR+RL +++P LA T+ IAA C FSL E Sbjct: 234 YDLAPNAEQHLRSRLRLANLYSPDALAATVDIAARCTFSLDE 275 >ref|YP_003907290.1| DNA polymerase III subunit alpha [Burkholderia sp. CCGE1003] gb|ADN57999.1| DNA polymerase III, alpha subunit [Burkholderia sp. CCGE1003] Length = 1049 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 160/280 (57%), Positives = 193/280 (68%), Gaps = 12/280 (4%) Query: 14 LPDYAELYCRTNFSFLQGASHAQELVDRAIELGYRALAITDECTMAGVVRAHAAWMEQVN 73 LP YAEL+C +NFSFL+GASHA+EL RA +LGY ALAITDEC++AGVVRAH A Sbjct: 8 LPAYAELFCLSNFSFLRGASHAEELAGRAAQLGYSALAITDECSLAGVVRAHVA------ 61 Query: 74 RGKAKDFKLLIGSCFRFTALKDDPAHPLAKMTLVGLARNREGYGNLCELITLARTRAEKG 133 K ++GS FR PA L+ LA+NR GYGNL ELITLARTRA KG Sbjct: 62 -AKEAKLPFIVGSYFRLVNADGSPA-----FGLILLAKNRNGYGNLSELITLARTRAPKG 115 Query: 134 SYLLSPEDLSQPPPALSHLRALPDCQLILVPDYPADEETLDAQLRWFAPLAPGRSWVGMT 193 Y L+P+DLS+P HL +PDC ILVP++PA EE LDAQL W PGR+WVG+ Sbjct: 116 EYRLTPQDLSRPDRDYRHLLGVPDCLAILVPNFPAKEEVLDAQLEWLDETFPGRAWVGLV 175 Query: 194 RLYRPLDDLHRAAIDAAARLHGLPLAAVGDVQMHQRSRKYLQDVVTAIRVGKPVQECGLS 253 R +DD+HR A++ AR +P+ A+G+V MH RSRK LQD +TAIRVGKPV ECG Sbjct: 176 LHQRAMDDIHRGAVEFIARNRDVPVVALGEVLMHVRSRKPLQDTLTAIRVGKPVHECGYD 235 Query: 254 LAPNAEQHLRSRVRLGMVHTPATLAQTLAIAADCRFSLAE 293 LAPNAEQHLRSR+RL +++P LA T+ IAA C FSL E Sbjct: 236 LAPNAEQHLRSRLRLANLYSPEALAATVDIAARCTFSLDE 275 >ref|YP_004753270.1| DNA polymerase III subunit alpha [Collimonas fungivorans Ter331] gb|AEK62447.1| DNA polymerase III alpha subunit [Collimonas fungivorans Ter331] Length = 1057 Score = 300 bits (767), Expect = 2e-79, Method: Composition-based stats. Identities = 161/293 (54%), Positives = 199/293 (67%), Gaps = 12/293 (4%) Query: 1 MQASLPLGVPQTGLPDYAELYCRTNFSFLQGASHAQELVDRAIELGYRALAITDECTMAG 60 M + L P LP+YAEL C +NFSFL+GASH +ELV+RA++LGY ALAITDEC++AG Sbjct: 3 MDKNPSLASPSIVLPEYAELQCVSNFSFLRGASHPEELVERAVQLGYAALAITDECSLAG 62 Query: 61 VVRAHAAWMEQVNRGKAKDFKLLIGSCFRFTALKDDPAHPLAKMTLVGLARNREGYGNLC 120 VVRAH K LLIGS F+ PA +L+ LA+NREGYGNL Sbjct: 63 VVRAHV-------EAKQHKLPLLIGSQFQLHEADGSPA-----FSLIALAQNREGYGNLS 110 Query: 121 ELITLARTRAEKGSYLLSPEDLSQPPPALSHLRALPDCQLILVPDYPADEETLDAQLRWF 180 ELITLAR+RA+KG YLL P+DL P A +HLR LPDC LIL+P + D ETL Q W Sbjct: 111 ELITLARSRADKGHYLLRPQDLDAPDGANAHLRQLPDCLLILLPVHGVDTETLARQATWL 170 Query: 181 APLAPGRSWVGMTRLYRPLDDLHRAAIDAAARLHGLPLAAVGDVQMHQRSRKYLQDVVTA 240 PGR+W+GMT L++ D+ RA I+ A+ GLP+ A GDV MH+RSRK LQD +TA Sbjct: 171 NNTFPGRAWIGMTMLHQVGDERQRAVIEQVAQQLGLPVVATGDVCMHRRSRKPLQDTLTA 230 Query: 241 IRVGKPVQECGLSLAPNAEQHLRSRVRLGMVHTPATLAQTLAIAADCRFSLAE 293 IR+GKPV CG +LAPNAEQHLR+R+RL ++ A LA+T+ IA C FSL E Sbjct: 231 IRLGKPVAACGYALAPNAEQHLRARLRLANLYPAAALAETVRIAGKCSFSLDE 283 >ref|ZP_03264505.1| DNA polymerase III, alpha subunit [Burkholderia sp. H160] gb|EEA03869.1| DNA polymerase III, alpha subunit [Burkholderia sp. H160] Length = 1049 Score = 298 bits (764), Expect = 6e-79, Method: Composition-based stats. Identities = 158/287 (55%), Positives = 192/287 (66%), Gaps = 12/287 (4%) Query: 7 LGVPQTGLPDYAELYCRTNFSFLQGASHAQELVDRAIELGYRALAITDECTMAGVVRAHA 66 + P T LP YAEL+C +NF+FL+GASHA+EL RA +LGY ALAITDEC++AGVVRAH Sbjct: 1 MDTPFTMLPAYAELFCFSNFTFLRGASHAEELAGRAAQLGYSALAITDECSLAGVVRAHV 60 Query: 67 AWMEQVNRGKAKDFKLLIGSCFRFTALKDDPAHPLAKMTLVGLARNREGYGNLCELITLA 126 A K ++GS FR PA L+ LARNR GYGNL ELITLA Sbjct: 61 A-------AKEAKLPFIVGSYFRLVNADGSPA-----FGLILLARNRNGYGNLSELITLA 108 Query: 127 RTRAEKGSYLLSPEDLSQPPPALSHLRALPDCQLILVPDYPADEETLDAQLRWFAPLAPG 186 R RA KG Y L+P+DLS+P A HL +PDC ILVPD+PA E+ LDAQ+ W G Sbjct: 109 RMRAPKGEYRLTPQDLSRPEKAYRHLLGMPDCLAILVPDFPASEDALDAQVEWLDATFTG 168 Query: 187 RSWVGMTRLYRPLDDLHRAAIDAAARLHGLPLAAVGDVQMHQRSRKYLQDVVTAIRVGKP 246 R+WVG+ R +DD+HR A++ AR +P+ A+G+V MH RSRK LQD +TAIRVGKP Sbjct: 169 RAWVGLVLHQRAMDDMHRGAVEFVARSRDVPVVALGEVVMHVRSRKPLQDTMTAIRVGKP 228 Query: 247 VQECGLSLAPNAEQHLRSRVRLGMVHTPATLAQTLAIAADCRFSLAE 293 V ECG LAPNAEQHLRSR+RL ++ LA TL I + C FSL E Sbjct: 229 VHECGYDLAPNAEQHLRSRLRLANLYPQDALAATLDITSRCTFSLDE 275