BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.1647.p         (100 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_03264505.1| DNA polymerase III, alpha subunit [Burkholder...   153   7e-36
ref|YP_003604847.1| DNA polymerase III, alpha subunit [Burkholde...   149   1e-34
ref|YP_001858195.1| DNA polymerase III subunit alpha [Burkholder...   149   1e-34
ref|YP_003907290.1| DNA polymerase III subunit alpha [Burkholder...   147   5e-34
ref|ZP_02881491.1| DNA polymerase III, alpha subunit [Burkholder...   145   2e-33

>ref|ZP_03264505.1| DNA polymerase III, alpha subunit [Burkholderia sp. H160]
 gb|EEA03869.1| DNA polymerase III, alpha subunit [Burkholderia sp. H160]
          Length = 1049

 Score =  153 bits (387), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 68/99 (68%), Positives = 82/99 (82%)

Query: 1    MASFQDGQFACCCGIVTVRQRPGTAKGVIFMTLEDETGSANVIVWPSVLERQRSEVLNAR 60
            + +++DG+ A  CG+VTVRQRPGTAKGV+F+TLEDETG+ NVI+WP +LE+QR E L A 
Sbjct: 950  LRTYRDGRLARACGLVTVRQRPGTAKGVVFVTLEDETGNVNVIIWPGLLEKQRKEALGAA 1009

Query: 61   LLGVYGSWQCHGEVRHLVAGRLEDWTHLLGELQPRSRDF 99
            LL VYG+WQC GEVRHLVA RL D +HLLGELQ  SRDF
Sbjct: 1010 LLAVYGTWQCQGEVRHLVAQRLVDMSHLLGELQTTSRDF 1048


>ref|YP_003604847.1| DNA polymerase III, alpha subunit [Burkholderia sp. CCGE1002]
 gb|ADG15336.1| DNA polymerase III, alpha subunit [Burkholderia sp. CCGE1002]
          Length = 1049

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 67/99 (67%), Positives = 82/99 (82%)

Query: 1    MASFQDGQFACCCGIVTVRQRPGTAKGVIFMTLEDETGSANVIVWPSVLERQRSEVLNAR 60
            + +++ G+ A  CG+VTVRQRPGTAKGV+F+TLEDETG+ NVI+WPS+LE+QR E L A 
Sbjct: 950  LRTYRHGRLARGCGLVTVRQRPGTAKGVVFVTLEDETGNVNVIIWPSLLEKQRKEALGAT 1009

Query: 61   LLGVYGSWQCHGEVRHLVAGRLEDWTHLLGELQPRSRDF 99
            LL VYG+WQC GEVRHLVA RL D +HLLGELQ  SR+F
Sbjct: 1010 LLAVYGTWQCQGEVRHLVAQRLVDMSHLLGELQTTSRNF 1048


>ref|YP_001858195.1| DNA polymerase III subunit alpha [Burkholderia phymatum STM815]
 gb|ACC71149.1| DNA polymerase III, alpha subunit [Burkholderia phymatum STM815]
          Length = 1049

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 68/99 (68%), Positives = 81/99 (81%)

Query: 1    MASFQDGQFACCCGIVTVRQRPGTAKGVIFMTLEDETGSANVIVWPSVLERQRSEVLNAR 60
            +  +++G+ A  CGIVTVRQRPGTAKGV+F+T+EDETG+ NVI+WPS+LERQR E L A 
Sbjct: 950  LRDYRNGRLARGCGIVTVRQRPGTAKGVLFVTIEDETGNVNVIIWPSLLERQRREALGAS 1009

Query: 61   LLGVYGSWQCHGEVRHLVAGRLEDWTHLLGELQPRSRDF 99
            LL VYG+WQC GEVRHLVA RL D +HLLG LQ  SRDF
Sbjct: 1010 LLAVYGTWQCEGEVRHLVAQRLVDMSHLLGGLQSTSRDF 1048


>ref|YP_003907290.1| DNA polymerase III subunit alpha [Burkholderia sp. CCGE1003]
 gb|ADN57999.1| DNA polymerase III, alpha subunit [Burkholderia sp. CCGE1003]
          Length = 1049

 Score =  147 bits (371), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 67/99 (67%), Positives = 82/99 (82%)

Query: 1    MASFQDGQFACCCGIVTVRQRPGTAKGVIFMTLEDETGSANVIVWPSVLERQRSEVLNAR 60
            + +++DG+ A  CG+VTVRQRPGTAKGVIF+T+EDETG+ NVI+WPS+LE+QR E L+A 
Sbjct: 950  LRTYRDGRLARGCGLVTVRQRPGTAKGVIFVTIEDETGNVNVIIWPSLLEKQRKEALSAS 1009

Query: 61   LLGVYGSWQCHGEVRHLVAGRLEDWTHLLGELQPRSRDF 99
            LL VYG WQC GEVRHLVA RL D +HLLG LQ  SR+F
Sbjct: 1010 LLAVYGVWQCQGEVRHLVAQRLVDMSHLLGGLQAVSRNF 1048


>ref|ZP_02881491.1| DNA polymerase III, alpha subunit [Burkholderia graminis C4D1M]
 gb|EDT12920.1| DNA polymerase III, alpha subunit [Burkholderia graminis C4D1M]
          Length = 1049

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 65/99 (65%), Positives = 81/99 (81%)

Query: 1    MASFQDGQFACCCGIVTVRQRPGTAKGVIFMTLEDETGSANVIVWPSVLERQRSEVLNAR 60
            + +++DG+ A  CG+VTVRQRPGTAKGV+F+TLEDETG+ NVI+WP++LE+QR E L+A 
Sbjct: 950  LRTYRDGRLARGCGLVTVRQRPGTAKGVVFVTLEDETGNVNVIIWPTLLEKQRKEALSAS 1009

Query: 61   LLGVYGSWQCHGEVRHLVAGRLEDWTHLLGELQPRSRDF 99
            LL VYG WQC GEVRHLVA RL D +HLLG L   SR+F
Sbjct: 1010 LLAVYGVWQCQGEVRHLVAQRLVDMSHLLGGLHSVSRNF 1048