BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1646.p (406 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775664.1| transmembrane protein [Herbaspirillum serope... 504 e-140 ref|YP_001352256.1| hypothetical protein mma_0566 [Janthinobacte... 252 7e-65 emb|CAL60790.2| conserved hypothetical protein; putative membran... 229 9e-58 ref|YP_001098917.1| hypothetical protein HEAR0589 [Herminiimonas... 212 8e-53 ref|YP_545307.1| diguanylate cyclase [Methylobacillus flagellatu... 209 8e-52 >ref|YP_003775664.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ63756.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 395 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 259/392 (66%), Positives = 300/392 (76%) Query: 14 MNPFTASIALAIVQFCSGVIMTGLFISTPSERFTRLWALSGVFSALGICTTVAVYGGLAG 73 MN TASIALA+VQFC G+IM GLF++ P E TRLWALSG+ A GIC + Y + Sbjct: 1 MNAATASIALALVQFCGGLIMAGLFMNMPKEHCTRLWALSGLCGAAGICLMLVGYNHMGD 60 Query: 74 NLRPLGLLLGNTLVFSSGIVAWCGLRSFYQRQSGDWPWMLVIAYAVCFTALLIGSADFTH 133 PL LL GNT +FS ++AW GLRSFYQR++G WPW+LV YA F+ LL+ FT Sbjct: 61 VWNPLALLAGNTGLFSCCLLAWAGLRSFYQRRTGWWPWLLVGFYAFLFSLLLLYQVSFTQ 120 Query: 134 RAYLAVGGLQVVFCLVLREFFKGMSGPLAARYPRWTFGRWIGIVALLILSATHVSRLLLS 193 R+YLA+ LQ+ F L L EF +GMSGP A RY RW+FGR IGIV+LLI +THV+R +LS Sbjct: 121 RSYLALVALQLTFWLALGEFARGMSGPHAQRYARWSFGRCIGIVSLLIFISTHVARFVLS 180 Query: 194 LSHPELFMPPEMSSLGVGLIYLIPISGTLLLSVSLMMIYFERLLADKQRLATEDELTGTL 253 SHPELF+PP MS++GV LIYLIP+SG+LL SVSLMMIYFERLLAD+QRLATED+LTG L Sbjct: 181 FSHPELFIPPAMSNIGVALIYLIPLSGSLLFSVSLMMIYFERLLADRQRLATEDQLTGAL 240 Query: 254 NRRELVRCGEEALARAVQGRRVLTLAFIDVDHFKDINDTHGHLVGDRVLADIGALLREHC 313 NRRELVRCGE LARAV+ + VL LAFIDVDHFK IND HGHL GDRVLA IGA L + C Sbjct: 241 NRRELVRCGELLLARAVERKSVLALAFIDVDHFKQINDRHGHLAGDRVLAGIGATLAQSC 300 Query: 314 CQGGMVGRYGGEEFCAVFPDWSEAQARQIAQHLLETVRNHDFGHGQTVTISVGLAVLSPG 373 G ++GRYGGEEFCAVFP QA QI Q LLE+VR F HG VTISVGLAVL PG Sbjct: 301 RPGDVLGRYGGEEFCAVFPGVDHDQACQIGQRLLESVRTQRFEHGHPVTISVGLAVLQPG 360 Query: 374 QSSSWDALVHEADLALYRAKSEGRNAFRMALA 405 SWD LVHEADLALYRAK+EGRNA+RMA++ Sbjct: 361 NQRSWDELVHEADLALYRAKNEGRNAYRMAMS 392 >ref|YP_001352256.1| hypothetical protein mma_0566 [Janthinobacterium sp. Marseille] gb|ABR91243.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 421 Score = 252 bits (644), Expect = 7e-65, Method: Composition-based stats. Identities = 146/387 (37%), Positives = 219/387 (56%), Gaps = 10/387 (2%) Query: 14 MNPFTASIALAIVQFCSGVIMTGLFISTPSERFTRLWALSGVFSALGICTTVAVYGGLAG 73 M+ FTA IAL +VQFC ++M G+F +TPSE+ T+ WALSG + A G+ + V L Sbjct: 43 MDSFTAGIALILVQFCIALVMAGVFYTTPSEKCTKYWALSGAWIAFGVLIAI-VNNRLH- 100 Query: 74 NLRPLGLLLGNTLVFSSGIVAWCGLRSFYQRQSGDWPWMLVIAYAVCFTALLIGSADFTH 133 RP +L G V I W G+R+FY++Q W W + IA+ + L + A+F Sbjct: 101 --RPAFILNGTGAVIIGLIFQWHGIRAFYKKQPQKWGWFICIAFVAILSMLFMLGANFQQ 158 Query: 134 RAYLAVGGLQVVFCLVLREFFKGMSGPLAARYPRWTFGRWIGIVALLILSATHVSRLLLS 193 R+ L + ++ L ++G SG P+ TF + + + A+++L +V R++++ Sbjct: 159 RSILVSSTVFLLLGLSFHAIWQGQSGA-----PK-TFVQALVLGAIVLLMTGNVLRIIIA 212 Query: 194 LSHPELFMPPEMSSLGVGLIYLIPISGTLLLSVSLMMIYFERLLADKQRLATEDELTGTL 253 +P E SS + + ++IP GT+L S+ L+++YFER + + + LAT DEL+ L Sbjct: 213 SLQIAGSIPLERSSFEIAVAFMIPTVGTVLFSIGLLLLYFERTVEENRHLATHDELSKLL 272 Query: 254 NRRELVRCGEEALARAVQGRRVLTLAFIDVDHFKDINDTHGHLVGDRVLADIGALLREHC 313 NRR +V GE LA A + LT+AFID+D FK ND GH GD V+ ++ A+L++ C Sbjct: 273 NRRAIVSAGEYNLASATRLGHELTIAFIDIDMFKHFNDKFGHAAGDTVIQEVAAILQQTC 332 Query: 314 CQGGMVGRYGGEEFCAVFPDWSEAQARQIAQHLLETVRNHDFGHGQTVTISVGLAVLSPG 373 MVGRYGGEEF + P + A + + L++ VR + F VTIS GL L Sbjct: 333 RTIDMVGRYGGEEFLIILPGVNRDAAAIVGERLVDAVRQYRFMGIHPVTISAGLTTLPKT 392 Query: 374 QSSSWDALVHEADLALYRAKSEGRNAF 400 + +W LV AD ALY AK GRN + Sbjct: 393 EQCTWTQLVRRADAALYEAKGLGRNRY 419 >emb|CAL60790.2| conserved hypothetical protein; putative membrane protein, putative GGDEF domain [Herminiimonas arsenicoxydans] Length = 381 Score = 229 bits (583), Expect = 9e-58, Method: Composition-based stats. Identities = 140/390 (35%), Positives = 216/390 (55%), Gaps = 14/390 (3%) Query: 14 MNPFTASIALAIVQFCSGVIMTGLFISTPSERFTRLWALSGVFSALGICTTVAVYGGLAG 73 M+ TA L +VQFC ++M G+F + P+++ TR WA+SG + ALG+ + L Sbjct: 1 MDALTAGTVLILVQFCIALVMAGVFFAAPTDKCTRYWAISGSYIALGVLIAI-----LNN 55 Query: 74 NL-RPLGLLLGNTLVFSSGIVAWCGLRSFYQRQSGDWPWMLVIAYAVCFTALLIGSADFT 132 L R LL G L+ + I W G+ FY++Q W W + A+ + LL A Sbjct: 56 RLPRAFVLLSGTGLIIAGLIYQWHGILVFYKKQPKKWGWGIFTAFLLTLAVLLYVDATAA 115 Query: 133 HRAYLAVGGLQVVFCLVLREFFKGMSGPLAARYPRWTFGRWIGIVALLILSATHVSRLLL 192 R+ L + L + ++G G PR TF + + A+++L ++V ++ + Sbjct: 116 QRSILYSVTTLALLGLSFQAIWQGQGGS-----PR-TFVQRLVQGAIVLLMVSYVLKIGI 169 Query: 193 SLSH-PELFMPPEMSSLG-VGLIYLIPISGTLLLSVSLMMIYFERLLADKQRLATEDELT 250 ++++ E M +S+ V + YLIP GT+L S+ L+++YFER + + + LAT DEL+ Sbjct: 170 AVTYISEGRMTTILSTTPEVIVTYLIPTVGTVLFSIGLLLLYFERTVEENRHLATHDELS 229 Query: 251 GTLNRRELVRCGEEALARAVQGRRVLTLAFIDVDHFKDINDTHGHLVGDRVLADIGALLR 310 NRR +V GE L +++ +R L +AFID+D FK ND GH GD V+A++ A+L+ Sbjct: 230 KLFNRRAIVAAGERELYLSIRLQRDLAIAFIDIDLFKRFNDEFGHAAGDTVIAEVAAVLQ 289 Query: 311 EHCCQGGMVGRYGGEEFCAVFPDWSEAQARQIAQHLLETVRNHDFGHGQTVTISVGLAVL 370 + C MVGRYGGEEF + P A QI Q L+E +R + F VTIS+G+A+L Sbjct: 290 QTCRSIDMVGRYGGEEFLVILPGVDSQSAVQIGQRLVEAMREYRFLGIHPVTISIGMAIL 349 Query: 371 SPGQSSSWDALVHEADLALYRAKSEGRNAF 400 SW L+ AD ALY AK+ GR+ + Sbjct: 350 PRNAECSWAQLLRRADAALYEAKNMGRDRY 379 >ref|YP_001098917.1| hypothetical protein HEAR0589 [Herminiimonas arsenicoxydans] Length = 361 Score = 212 bits (540), Expect = 8e-53, Method: Composition-based stats. Identities = 132/370 (35%), Positives = 204/370 (55%), Gaps = 14/370 (3%) Query: 34 MTGLFISTPSERFTRLWALSGVFSALGICTTVAVYGGLAGNL-RPLGLLLGNTLVFSSGI 92 M G+F + P+++ TR WA+SG + ALG+ + L L R LL G L+ + I Sbjct: 1 MAGVFFAAPTDKCTRYWAISGSYIALGVLIAI-----LNNRLPRAFVLLSGTGLIIAGLI 55 Query: 93 VAWCGLRSFYQRQSGDWPWMLVIAYAVCFTALLIGSADFTHRAYLAVGGLQVVFCLVLRE 152 W G+ FY++Q W W + A+ + LL A R+ L + L + Sbjct: 56 YQWHGILVFYKKQPKKWGWGIFTAFLLTLAVLLYVDATAAQRSILYSVTTLALLGLSFQA 115 Query: 153 FFKGMSGPLAARYPRWTFGRWIGIVALLILSATHVSRLLLSLSH-PELFMPPEMSSLG-V 210 ++G G PR TF + + A+++L ++V ++ +++++ E M +S+ V Sbjct: 116 IWQGQGGS-----PR-TFVQRLVQGAIVLLMVSYVLKIGIAVTYISEGRMTTILSTTPEV 169 Query: 211 GLIYLIPISGTLLLSVSLMMIYFERLLADKQRLATEDELTGTLNRRELVRCGEEALARAV 270 + YLIP GT+L S+ L+++YFER + + + LAT DEL+ NRR +V GE L ++ Sbjct: 170 IVTYLIPTVGTVLFSIGLLLLYFERTVEENRHLATHDELSKLFNRRAIVAAGERELYLSI 229 Query: 271 QGRRVLTLAFIDVDHFKDINDTHGHLVGDRVLADIGALLREHCCQGGMVGRYGGEEFCAV 330 + +R L +AFID+D FK ND GH GD V+A++ A+L++ C MVGRYGGEEF + Sbjct: 230 RLQRDLAIAFIDIDLFKRFNDEFGHAAGDTVIAEVAAVLQQTCRSIDMVGRYGGEEFLVI 289 Query: 331 FPDWSEAQARQIAQHLLETVRNHDFGHGQTVTISVGLAVLSPGQSSSWDALVHEADLALY 390 P A QI Q L+E +R + F VTIS+G+A+L SW L+ AD ALY Sbjct: 290 LPGVDSQSAVQIGQRLVEAMREYRFLGIHPVTISIGMAILPRNAECSWAQLLRRADAALY 349 Query: 391 RAKSEGRNAF 400 AK+ GR+ + Sbjct: 350 EAKNMGRDRY 359 >ref|YP_545307.1| diguanylate cyclase [Methylobacillus flagellatus KT] gb|ABE49466.1| diguanylate cyclase (GGDEF domain) [Methylobacillus flagellatus KT] Length = 394 Score = 209 bits (531), Expect = 8e-52, Method: Composition-based stats. Identities = 132/388 (34%), Positives = 216/388 (55%), Gaps = 15/388 (3%) Query: 15 NPFTASIALAIVQFCSGVIMTGLFISTPSERFTRLWALSGVFSALGICTTVAVYGGLAGN 74 N +TA+IA +I Q C +IM G++ P+ER TR WALSG+ S G TT+ + Sbjct: 6 NSYTANIAYSISQLCIAIIMGGVYFLAPTERSTRYWALSGLISVFG--TTLTAFS--ISK 61 Query: 75 LRPLGLLLGNTLVFSSGIVAWCGLRSFYQRQSGDWPWMLVIAYAVCFTALLIGSADFTHR 134 L L++G+TL+ ++ W G ++F+ ++ W LV+ + + ++ +++ R Sbjct: 62 FGHLPLIIGSTLMIAAMTAKWWGTQAFFGKRPAHVGWYLVLGFFIAYSLVVLLQLAVAIR 121 Query: 135 AYLAVGGLQVVFCLVLREFFKGMSGPLAARYPRWTFGRWIGIVALLILSATHVSRLLLSL 194 A L L ++ L + E + AR + +F + I+A + + + R +L++ Sbjct: 122 ALLFSLMLALMMLLTVYEVIR-------ARGIKLSFANSLVIIAYTLAAVDFILRGILAI 174 Query: 195 SHPELFMPPEMSSLGVGLIYLIPISGTLLLSVSLMMIYFERLLADKQRLATEDELTGTLN 254 S P + + V +YL+P+ LL S+ L+++YFE ++ +K+ LAT DELT N Sbjct: 175 SGGIDLTPQSHNPVNVFGLYLVPMWCNLLGSLGLLLMYFESIIHEKEHLATHDELTKIYN 234 Query: 255 RRELVRCGEEALARAVQGRRVLTLAFIDVDHFKDINDTHGHLVGDRVLADIGALLREHCC 314 RR LV G + A + +R +++ ID+DHFK INDT+GH GD+VL + L C Sbjct: 235 RRALVNLGRREIDLAHRYKRPISIFMIDLDHFKLINDTYGHDAGDKVLRSVALTLSNTCR 294 Query: 315 QGGMVGRYGGEEFCAVFPDWSEAQARQIAQHLLETVRN--HDFGHGQTVTISVGLAVLSP 372 ++GRYGGEE C V P ++ +A + + LLE +RN H + VT S+GL +P Sbjct: 295 NTDIIGRYGGEELCIVCPHTTKEEATALGERLLEALRNLRHPACDNRHVTCSIGLYTWNP 354 Query: 373 --GQSSSWDALVHEADLALYRAKSEGRN 398 +++W+A++H AD ALY AK+ GRN Sbjct: 355 HIDLAANWEAMLHRADTALYAAKAAGRN 382