BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1645.p (313 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775663.1| LysR family transcription regulator protein ... 514 e-144 ref|YP_004752184.1| LysR family transcriptional regulator [Colli... 439 e-121 ref|YP_283703.1| LysR family transcriptional regulator [Dechloro... 263 4e-68 ref|YP_260937.1| LysR family transcriptional regulator [Pseudomo... 232 7e-59 ref|YP_004156588.1| LysR family transcriptional regulator [Vario... 216 5e-54 >ref|YP_003775663.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63755.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 313 Score = 514 bits (1325), Expect = e-144, Method: Composition-based stats. Identities = 290/312 (92%), Positives = 298/312 (95%) Query: 1 MELRQLRYFVAIVDHGSLSRAARVLHIAQPALTQQIRQLEDEMAAQLLHRSAQGVIATDA 60 MELRQLRYFVAIVDHGSLSRAAR LHIAQPALTQQIRQLEDE+AAQLLHRSAQGVIATDA Sbjct: 1 MELRQLRYFVAIVDHGSLSRAARALHIAQPALTQQIRQLEDELAAQLLHRSAQGVIATDA 60 Query: 61 GKVFYEHALAILKQVQDAKQAVAQSTDKPSGTVALGIPQSVSNALALPLLNAVRSIYPEI 120 GKVFYEHALAILKQVQDAKQAV QS DKPSGTVALGIPQSVSNALALPLLNAVRS YPEI Sbjct: 61 GKVFYEHALAILKQVQDAKQAVGQSADKPSGTVALGIPQSVSNALALPLLNAVRSTYPEI 120 Query: 121 TLQLTEELTGNLITQLKSGRINLAVLFDDGQLSSFAATPMIEEEMMYITRADSQYGAGKK 180 TLQLTEELTGNLITQLKSGRINLAVLFDDGQLSSFAATPMIEEEMMYITRA SQYG + Sbjct: 121 TLQLTEELTGNLITQLKSGRINLAVLFDDGQLSSFAATPMIEEEMMYITRAKSQYGVAGR 180 Query: 181 KSVTLAQAIKAPLILPGLQHGVRPRIENIVRSQGMSLDNVIEINSVAILKSAILADIGAT 240 KSV LA+AI+APLILPGL HGVRPRIEN+VRSQGMSLDNVIEINSVAILKSAILADIGAT Sbjct: 181 KSVPLARAIQAPLILPGLAHGVRPRIENLVRSQGMSLDNVIEINSVAILKSAILADIGAT 240 Query: 241 ILPVAPLLADIERGEMVAHAIAGEQISRTLVLCASRNIPLTTAAAAVERLVLDVTDALCR 300 ILPVAPLLADIERGEMVAH IAGE+ISRTL LCASRNIPLTTAAAAVE+LVLDVTD LCR Sbjct: 241 ILPVAPLLADIERGEMVAHRIAGERISRTLALCASRNIPLTTAAAAVEQLVLDVTDELCR 300 Query: 301 SGQWGHTRLLER 312 SG+WGHT LLER Sbjct: 301 SGRWGHTELLER 312 >ref|YP_004752184.1| LysR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK61361.1| transcriptional regulator, LysR family [Collimonas fungivorans Ter331] Length = 315 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 243/315 (77%), Positives = 286/315 (90%), Gaps = 4/315 (1%) Query: 1 MELRQLRYFVAIVDHGSLSRAARVLHIAQPALTQQIRQLEDEMAAQLLHRSAQGVIATDA 60 MELRQLRYFVAIVDHGSLSRAARVLHIAQPALTQQ++QLEDE+AAQLLHRSAQGVIATDA Sbjct: 1 MELRQLRYFVAIVDHGSLSRAARVLHIAQPALTQQVKQLEDELAAQLLHRSAQGVIATDA 60 Query: 61 GKVFYEHALAILKQVQDAKQAVAQSTDKPSGTVALGIPQSVSNALALPLLNAVRSIYPEI 120 GK+FYEHA AILKQV DA+ AVAQSTDKP+GTVALGIPQS S LALPLL A+R+ YP+I Sbjct: 61 GKIFYEHAQAILKQVTDARSAVAQSTDKPAGTVALGIPQSASGILALPLLTAMRARYPDI 120 Query: 121 TLQLTEELTGNLITQLKSGRINLAVLFDDGQLSSFAATPMIEEEMMYITRADSQYGAGKK 180 +LQLTEELTGNLI QLK+GRINLAVLF+DGQL++FA TP++EEEMM+ITR+ S+Y A + Sbjct: 121 SLQLTEELTGNLIEQLKTGRINLAVLFNDGQLTAFATTPLVEEEMMFITRSGSRY-ASAR 179 Query: 181 KSVTLAQAIKAPLILPGLQHGVRPRIENIVRSQGMSLDNVIEINSVAILKSAILADIGAT 240 +S+T A+A+KA LILPG+QHGVRPRIE++ R+ G++LDNV+EI+SV I+KSAILADIGAT Sbjct: 180 RSITFARAVKARLILPGMQHGVRPRIESVARAAGLTLDNVVEISSVTIMKSAILADIGAT 239 Query: 241 ILPVAPLLADIERGEMVAH---AIAGEQISRTLVLCASRNIPLTTAAAAVERLVLDVTDA 297 ILPVAPLL +I+RGEM A+ AI+GE++SRTL LCAS+NIPLTTAAAAVERLVL+VTD Sbjct: 240 ILPVAPLLPEIKRGEMSAYSISAISGEKLSRTLTLCASKNIPLTTAAAAVERLVLEVTDE 299 Query: 298 LCRSGQWGHTRLLER 312 LCRSGQW H ++L R Sbjct: 300 LCRSGQWLHAKILAR 314 >ref|YP_283703.1| LysR family transcriptional regulator [Dechloromonas aromatica RCB] gb|AAZ45233.1| transcriptional regulator, LysR family [Dechloromonas aromatica RCB] Length = 319 Score = 263 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 149/311 (47%), Positives = 210/311 (67%), Gaps = 3/311 (0%) Query: 1 MELRQLRYFVAIVDHGSLSRAARVLHIAQPALTQQIRQLEDEMAAQLLHRSAQGVIATDA 60 MELRQLRYF+AI +HGS S+AA +H+AQ AL+ Q+ QLEDE+ L HR +GV T A Sbjct: 1 MELRQLRYFLAIAEHGSFSKAASSVHVAQSALSHQLAQLEDELGQPLFHRLPRGVALTPA 60 Query: 61 GKVFYEHALAILKQVQDAKQAVAQSTDKPSGTVALGIPQSVSNALALPLLNAVRSIYPEI 120 G+ F+ HAL+IL+QV+DA+ +V Q+ + G V GIP SVS ALALPLL AVR+ P + Sbjct: 61 GRAFHPHALSILRQVEDARHSVTQAEGETVGKVIFGIPHSVSQALALPLLKAVRAALPRV 120 Query: 121 TLQLTEELTGNLITQLKSGRINLAVLFDDGQLSSFAATPMIEEEMMYITRADSQYGAGKK 180 L+LTEELTGNLI QL++G I+LAVLFDDGQL F P++EE ++ I+ A++ Sbjct: 121 ELELTEELTGNLIPQLRTGLIHLAVLFDDGQLDEFRCHPLLEEALLLISPAEAP--DAPS 178 Query: 181 KSVTLAQAIKAPLILPGLQHGVRPRIENIVRSQGMSLDNVI-EINSVAILKSAILADIGA 239 ++L A++ PLILP HGVRP +E R G + NV+ +I+S++IL++++LA +G Sbjct: 179 GPISLRDALRLPLILPAWPHGVRPIVEAAARQAGRAAPNVVADISSISILRTSLLAGLGH 238 Query: 240 TILPVAPLLADIERGEMVAHAIAGEQISRTLVLCASRNIPLTTAAAAVERLVLDVTDALC 299 T+LP PLL +++ G + A IA E ++R ++LCASR IP + A AV + + LC Sbjct: 239 TLLPPMPLLHELDSGALRATPIAPETLTRRIMLCASRQIPASAATLAVAHVAQTLVGQLC 298 Query: 300 RSGQWGHTRLL 310 G W +L+ Sbjct: 299 ADGSWREAQLI 309 >ref|YP_260937.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf-5] gb|AAY93101.1| transcriptional regulator, LysR family [Pseudomonas fluorescens Pf-5] Length = 315 Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats. Identities = 132/313 (42%), Positives = 196/313 (62%), Gaps = 4/313 (1%) Query: 1 MELRQLRYFVAIVDHGSLSRAARVLHIAQPALTQQIRQLEDEMAAQLLHRSAQGVIATDA 60 ME+RQL+YFVA+VD GSLSRAAR +H+AQ AL++Q+ LE ++ AQL HRS G+ DA Sbjct: 1 MEIRQLKYFVAVVDAGSLSRAAREVHVAQSALSKQMSALEADLGAQLFHRSNSGIRVNDA 60 Query: 61 GKVFYEHALAILKQVQDAKQAVAQSTDKPSGTVALGIPQSVSNALALPLLNAVRSIYPEI 120 GK+FYE+A +LK +QDA+ A++ SG++ + +PQSV++ +ALPL+ AV YP++ Sbjct: 61 GKLFYEYAQGLLKHLQDARAAISSEPGALSGSIVVALPQSVASTVALPLIQAVARTYPKV 120 Query: 121 TLQLTEELTGNLITQLKSGRINLAVLFDDGQLSSFAATPMIEEEMMYITRADSQYGAGKK 180 L L EELTGNL+ QL GR+++A+ G + +P++EE+ I RAD ++ A Sbjct: 121 ELHLNEELTGNLVDQLVRGRVDIALFTPIGLPPQVSFSPLLEEDFYLIHRADDRH-APPP 179 Query: 181 KSVTLAQAIKAPLILPGLQHGVRPRI---ENIVRSQGMSLDNVIEINSVAILKSAILADI 237 VTLA+A+ PL+ P H R + + R +E+NSV ILKSA+ A I Sbjct: 180 GCVTLAEAVARPLVFPSRAHSHSTRACVDQALERLHLPPAQVAMEVNSVHILKSAVEAGI 239 Query: 238 GATILPVAPLLADIERGEMVAHAIAGEQISRTLVLCASRNIPLTTAAAAVERLVLDVTDA 297 G +I+P+ L ++ G +VAH I ++ RTL +C +P + +A+ L+ V Sbjct: 240 GPSIMPLNLALREVAEGRLVAHTIQPREVFRTLGICVCEALPGSNLRSAIANLIAQVVRD 299 Query: 298 LCRSGQWGHTRLL 310 + RSG+W TRLL Sbjct: 300 MSRSGEWPATRLL 312 >ref|YP_004156588.1| LysR family transcriptional regulator [Variovorax paradoxus EPS] gb|ADU38477.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS] Length = 337 Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 134/312 (42%), Positives = 184/312 (58%), Gaps = 4/312 (1%) Query: 1 MELRQLRYFVAIVDHGSLSRAARVLHIAQPALTQQIRQLEDEMAAQLLHRSAQGVIATDA 60 MELRQ +YFVAIVD GSLSRAA+ L +AQ AL++Q+ +LE E+ LL RS GV T+A Sbjct: 1 MELRQFKYFVAIVDCGSLSRAAQQLFVAQSALSKQMAELEGELGTPLLLRSRNGVTVTEA 60 Query: 61 GKVFYEHALAILKQVQDAKQAVAQSTDKPSGTVALGIPQSVSNALALPLLNAVRSIYPEI 120 GKVFYE+A I KQV DAK AV + D G+V +PQSVS +ALPL+ A YP++ Sbjct: 61 GKVFYEYAQGITKQVGDAKAAVHVAADSVVGSVVAALPQSVSPMIALPLMRAAARRYPDV 120 Query: 121 TLQLTEELTGNLITQLKSGRINLAVLFDDGQLSSFAATPMIEEEMMYITRADSQYGAGKK 180 L EELTGN+ QL GR+++A+ A TP++EE+ +++ A Sbjct: 121 VFHLNEELTGNMADQLLRGRVDVAIFSPTMPAEDIAFTPLVEEDFVFLESPQDPR-ALPP 179 Query: 181 KSVTLAQAIKAPLILPGLQHG--VRPRIENIVRSQGMSLDNV-IEINSVAILKSAILADI 237 V++ +A PL+ P HG R ++ ++ + G V EINSV LK+A+ A + Sbjct: 180 GDVSIEEATARPLVWPANAHGHCTRWLVDAVLEAAGQPPARVAAEINSVYTLKAAVEAGL 239 Query: 238 GATILPVAPLLADIERGEMVAHAIAGEQISRTLVLCASRNIPLTTAAAAVERLVLDVTDA 297 GATI+P+ ++ + AH I + RTL LC S ++P T A A+ L+ DV Sbjct: 240 GATIMPLGLAQREVREDRLRAHRIDSPAMFRTLGLCVSVHLPTTNAKRAICNLIGDVIRD 299 Query: 298 LCRSGQWGHTRL 309 LC SGQW TRL Sbjct: 300 LCTSGQWEGTRL 311