BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1644.p (258 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775662.1| GntR family transcription regulator protein ... 439 e-121 ref|ZP_06687284.1| GntR family transcriptional regulator [Achrom... 314 1e-83 ref|YP_003978645.1| GntR family transcriptional regulator [Achro... 310 2e-82 gb|EFV85338.1| GntR family Transcriptional regulator [Achromobac... 293 2e-77 ref|YP_524819.1| GntR-like protein [Rhodoferax ferrireducens T11... 283 2e-74 >ref|YP_003775662.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ63754.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 258 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 231/258 (89%), Positives = 241/258 (93%) Query: 1 MPSSSKSPRPGASGDILSLAAAGLGPVRPERFAERVYETLFHAIVEGRIAVGSKLPSEND 60 MP++SK R GAS DIL+LAAAGLGPVRPERFAERVYETLFHAIVEGRI VGSKLPSEND Sbjct: 1 MPNTSKPARAGASSDILNLAAAGLGPVRPERFAERVYETLFHAIVEGRITVGSKLPSEND 60 Query: 61 LATLFEVSRPVVRQALDRLREDQLVESQRGSGTYVKEKAGLAPARPDGEPETRIGHIMNG 120 LATLFEVSRPVVRQALDRLREDQLVES RGSGTYVKEK GLAPA+P EPETRIGHIMNG Sbjct: 61 LATLFEVSRPVVRQALDRLREDQLVESLRGSGTYVKEKPGLAPAQPGAEPETRIGHIMNG 120 Query: 121 LELRLVLEPECAYMAALRRNKQDLEKMDALLLGFEEANRVGGIAHHYDFGFHEAIAQATG 180 LELRLV+EPECA MAALRRN+QDL++M+ LL GFE ANRVGGIAHHYDFGFHEAIA ATG Sbjct: 121 LELRLVIEPECAAMAALRRNRQDLDRMERLLEGFEAANRVGGIAHHYDFGFHEAIATATG 180 Query: 181 NQRFVQVMKTLEYDVSHAVNMLRHLMQIPPWKRSQDAMDEHRQIFELIRLQDAEGARRAM 240 N RFVQVMKTLEYDVSHAVNMLRHLM I PWKRSQDAMDEHRQIFELIR+QDAEGARRAM Sbjct: 181 NLRFVQVMKTLEYDVSHAVNMLRHLMHIAPWKRSQDAMDEHRQIFELIRVQDAEGARRAM 240 Query: 241 RGHIENARTRMFNSRPGL 258 RGHIENARTRMFNSRPGL Sbjct: 241 RGHIENARTRMFNSRPGL 258 >ref|ZP_06687284.1| GntR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gb|EFF75799.1| GntR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 267 Score = 314 bits (804), Expect = 1e-83, Method: Composition-based stats. Identities = 163/251 (64%), Positives = 199/251 (79%), Gaps = 2/251 (0%) Query: 4 SSKSPRPGASGDILSLAAAGLGPVRPERFAERVYETLFHAIVEGRIAVGSKLPSENDLAT 63 S+ PRP D+L+ A+GLG VR ERFAERVYE+LF+AI G+IA G+KLP+E +LA Sbjct: 15 SASRPRPEL--DVLADVASGLGYVRAERFAERVYESLFYAIATGKIAPGNKLPTELELAA 72 Query: 64 LFEVSRPVVRQALDRLREDQLVESQRGSGTYVKEKAGLAPARPDGEPETRIGHIMNGLEL 123 LFEVSRPVVRQALDRLREDQLV+S RGSGTYV+ K L P +P R+GHI+ GLEL Sbjct: 73 LFEVSRPVVRQALDRLREDQLVDSIRGSGTYVRAKPDLMGGMPAVDPARRVGHILEGLEL 132 Query: 124 RLVLEPECAYMAALRRNKQDLEKMDALLLGFEEANRVGGIAHHYDFGFHEAIAQATGNQR 183 R+V+EPECAY+AALRR+ DL MD +L G+EEA+ G IAHHYD+GFH AIA AT NQR Sbjct: 133 RMVIEPECAYLAALRRSNDDLRDMDRMLTGYEEADASGAIAHHYDYGFHRAIAAATSNQR 192 Query: 184 FVQVMKTLEYDVSHAVNMLRHLMQIPPWKRSQDAMDEHRQIFELIRLQDAEGARRAMRGH 243 FVQV+K+LEYDVSHAVN++RHL+ PWKR++ A+DEHR I+ LI+ QDA+GAR MR H Sbjct: 193 FVQVLKSLEYDVSHAVNVMRHLVHSEPWKRTRAAIDEHRHIYRLIQEQDADGARNVMRAH 252 Query: 244 IENARTRMFNS 254 IE A++RM NS Sbjct: 253 IEKAKSRMLNS 263 >ref|YP_003978645.1| GntR family transcriptional regulator [Achromobacter xylosoxidans A8] gb|ADP15930.1| bacterial regulatory protein, GntR family protein 27 [Achromobacter xylosoxidans A8] Length = 267 Score = 310 bits (793), Expect = 2e-82, Method: Composition-based stats. Identities = 161/246 (65%), Positives = 196/246 (79%) Query: 9 RPGASGDILSLAAAGLGPVRPERFAERVYETLFHAIVEGRIAVGSKLPSENDLATLFEVS 68 RP D+L+ A+GLG VR ERFAERVYE+LF+AI G+IA GSKLP+E +LA LFEVS Sbjct: 18 RPRPELDVLAEVASGLGYVRAERFAERVYESLFYAIATGKIAPGSKLPTELELAALFEVS 77 Query: 69 RPVVRQALDRLREDQLVESQRGSGTYVKEKAGLAPARPDGEPETRIGHIMNGLELRLVLE 128 RPVVRQALDRLREDQLV+S RGSG+YV+ K L P +P R+GHI+ GLELR+V+E Sbjct: 78 RPVVRQALDRLREDQLVDSIRGSGSYVRAKPDLMGGMPAVDPARRVGHILEGLELRMVIE 137 Query: 129 PECAYMAALRRNKQDLEKMDALLLGFEEANRVGGIAHHYDFGFHEAIAQATGNQRFVQVM 188 PECAY+AALRR +DL MD +L G+EEA+ G IAHH+D+GFH AIA AT NQRFVQV+ Sbjct: 138 PECAYLAALRRTDEDLRDMDRMLTGYEEADASGAIAHHHDYGFHRAIAAATSNQRFVQVL 197 Query: 189 KTLEYDVSHAVNMLRHLMQIPPWKRSQDAMDEHRQIFELIRLQDAEGARRAMRGHIENAR 248 K+LEYDVSHAVN++RHL+ PWKR++ A++EHR I+ LI+ QDAEGAR MR HIE AR Sbjct: 198 KSLEYDVSHAVNVMRHLVHSQPWKRTRAAIEEHRHIYRLIQEQDAEGARNVMRAHIEKAR 257 Query: 249 TRMFNS 254 +RM NS Sbjct: 258 SRMLNS 263 >gb|EFV85338.1| GntR family Transcriptional regulator [Achromobacter xylosoxidans C54] Length = 267 Score = 293 bits (749), Expect = 2e-77, Method: Composition-based stats. Identities = 163/250 (65%), Positives = 198/250 (79%) Query: 5 SKSPRPGASGDILSLAAAGLGPVRPERFAERVYETLFHAIVEGRIAVGSKLPSENDLATL 64 + + RP D+L+ A+GLG VR ERFAERVYE+LF+AI G+IA G+KLP+E +LA L Sbjct: 14 TAASRPRPELDVLAEVASGLGYVRAERFAERVYESLFYAIATGKIAPGAKLPTELELAAL 73 Query: 65 FEVSRPVVRQALDRLREDQLVESQRGSGTYVKEKAGLAPARPDGEPETRIGHIMNGLELR 124 FEVSRPVVRQALDRLREDQLVES RGSG+YV+ K L +P R+GHI+ GLELR Sbjct: 74 FEVSRPVVRQALDRLREDQLVESMRGSGSYVRAKPDLMGGMSAVDPARRVGHILEGLELR 133 Query: 125 LVLEPECAYMAALRRNKQDLEKMDALLLGFEEANRVGGIAHHYDFGFHEAIAQATGNQRF 184 +V+EPECAY+AALRR DL +MD +L G+E A+ G IAHH+D+GFH AIA ATGNQRF Sbjct: 134 MVIEPECAYLAALRRTDDDLAEMDRMLAGYEAADAAGAIAHHHDYGFHRAIAAATGNQRF 193 Query: 185 VQVMKTLEYDVSHAVNMLRHLMQIPPWKRSQDAMDEHRQIFELIRLQDAEGARRAMRGHI 244 VQV+K+LEYDVSHAVN++RHL+ PWKR++ A+DEHRQI+ LIR QDAEGAR MR HI Sbjct: 194 VQVLKSLEYDVSHAVNVMRHLVHSEPWKRTRAAIDEHRQIYRLIREQDAEGARNIMRAHI 253 Query: 245 ENARTRMFNS 254 E AR+RM NS Sbjct: 254 EKARSRMLNS 263 >ref|YP_524819.1| GntR-like protein [Rhodoferax ferrireducens T118] gb|ABD71288.1| transcriptional regulator, GntR family [Rhodoferax ferrireducens T118] Length = 275 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 150/261 (57%), Positives = 193/261 (73%), Gaps = 7/261 (2%) Query: 1 MPSSSK------SPRPGASGDILSLAAAGLGPVRPERFAERVYETLFHAIVEGRIAVGSK 54 MP SK S P + + ++ GL PVR ERFAERVY++LFH+I+ G++A ++ Sbjct: 11 MPKQSKADAAAGSSGPSQAKNASAMPGLGLEPVRHERFAERVYDSLFHSIMTGKLAPDTR 70 Query: 55 LPSENDLATLFEVSRPVVRQALDRLREDQLVESQRGSGTYVKEKAGLA-PARPDGEPETR 113 LP E LA F+VSRPVVRQALDRLR+D+LVE RGSGTYV+ L PA P T Sbjct: 71 LPPEVQLAHFFQVSRPVVRQALDRLRQDRLVEPIRGSGTYVRACGTLPDPAIPASRYATD 130 Query: 114 IGHIMNGLELRLVLEPECAYMAALRRNKQDLEKMDALLLGFEEANRVGGIAHHYDFGFHE 173 + HI++GLELRLV+EPECA++AALRR DL +M+ +L GFE+A G +AHH+D+GFHE Sbjct: 131 MSHIIHGLELRLVIEPECAHLAALRRKPADLARMEEMLEGFEKATARGDVAHHFDYGFHE 190 Query: 174 AIAQATGNQRFVQVMKTLEYDVSHAVNMLRHLMQIPPWKRSQDAMDEHRQIFELIRLQDA 233 IAQAT N R V+V+K+LEYDVSHAVN+ RH+ Q+ PW+R+QDA+DEHR IFELI+ DA Sbjct: 191 TIAQATANPRLVKVLKSLEYDVSHAVNLWRHMAQMKPWQRTQDALDEHRAIFELIKRHDA 250 Query: 234 EGARRAMRGHIENARTRMFNS 254 +GARRAMR H+E AR RM ++ Sbjct: 251 DGARRAMRSHVEKARVRMLDA 271