BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1636.p (407 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775656.1| branched-chain amino acid ABC transporter pe... 553 e-155 ref|YP_001353241.1| ABC-type branched-chain amino acid transport... 370 e-100 ref|ZP_08274986.1| inner-membrane translocator [Oxalobacteraceae... 361 1e-97 ref|YP_549390.1| inner-membrane translocator [Polaromonas sp. JS... 349 5e-94 ref|YP_726022.1| ABC-type transporter, permease component [Ralst... 340 2e-91 >ref|YP_003775656.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ63748.1| ABC-type branched-chain amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 404 Score = 553 bits (1426), Expect = e-155, Method: Composition-based stats. Identities = 336/404 (83%), Positives = 358/404 (88%), Gaps = 5/404 (1%) Query: 1 MRRIVLPWLLFALMLLAAPLVFPQSAALSLLSQMGTMVLLCLSYNMLLGEGGMLSFGHAV 60 M+R++LPWL FAL+LLAAPLVFPQSAALSLLSQMGTMVLLCLSYNMLLGEGGMLSFGHAV Sbjct: 3 MKRLLLPWLGFALVLLAAPLVFPQSAALSLLSQMGTMVLLCLSYNMLLGEGGMLSFGHAV 62 Query: 61 YSGLGAFGAIHLMNRMADGVLAFPVTLVPLVGGLTGALCAVVLGYLTTRRAGTTFAMITL 120 YSGLGAFGAIHLMNRMA+G LAFP+TLVPL GGLTGALC V+LGYLTTRRAGTTFAMITL Sbjct: 63 YSGLGAFGAIHLMNRMAEGALAFPMTLVPLAGGLTGALCGVLLGYLTTRRAGTTFAMITL 122 Query: 121 GLVELVSACVLMFPEVFGGEGGISGNRVIGEPVLGISYGPQIQVYYLIAGWLLVCAIAIH 180 GLVELVSACVLMFPEVFGGEGGISGNRVIGEPVLGISYGPQIQVYYLIAGWLLVCAIAI Sbjct: 123 GLVELVSACVLMFPEVFGGEGGISGNRVIGEPVLGISYGPQIQVYYLIAGWLLVCAIAIW 182 Query: 181 ALRHTPLGRILNAVRDNPERAAFLGYDPQRVRYLALILSAFFAGVSGGLSAINFEIVSAE 240 ALR TPLGRILNAVRDNPERAAF+GYDPQRVRYLALILSAFFAGVSGGLSAINFEIVSAE Sbjct: 183 ALRATPLGRILNAVRDNPERAAFIGYDPQRVRYLALILSAFFAGVSGGLSAINFEIVSAE 242 Query: 241 YVGALRSGTILLFTFIGGTAYFYGPVIGGVVGVLFSSWLSAYTQAWQFYLGALFILIVMT 300 YVGALRSG ILLFTFIGG+AYFYGP++GGVVGVLFSSWLSAYTQAWQFYLGA FILIVMT Sbjct: 243 YVGALRSGAILLFTFIGGSAYFYGPIVGGVVGVLFSSWLSAYTQAWQFYLGAFFILIVMT 302 Query: 301 TPGGLASLIDRSWHLLQGGQVNARLAGRLAWWLAAAFCTLTGVILATEMAYQASLGSLAD 360 PGGLASLID+ W +L+ G + R+A R WLAAA L G++LATEMAYQASLGSLA+ Sbjct: 303 APGGLASLIDQGWRILRSGAFDTRMAVRATAWLAAALPVLAGLVLATEMAYQASLGSLAE 362 Query: 361 TGEGAASLMLWGWRIDVHAAAPWGLAALCVVVGAGALVAWQSSG 404 A L WGW +DVHA PW A L + G AL W+ G Sbjct: 363 -----APLRWWGWTVDVHAPLPWMTALLLMSGGVAALCCWRRQG 401 >ref|YP_001353241.1| ABC-type branched-chain amino acid transport system permease component [Janthinobacterium sp. Marseille] gb|ABR88583.1| ABC-type branched-chain amino acid transport system permease component [Janthinobacterium sp. Marseille] Length = 424 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 240/400 (60%), Positives = 290/400 (72%), Gaps = 8/400 (2%) Query: 6 LPWLLFALMLLAAPLVFPQSAALSLLSQMGTMVLLCLSYNMLLGEGGMLSFGHAVYSGLG 65 L W F +L+ APL+F QSA+LSLL QMGT ++ LSYNMLLG+GGMLSFGHAVYSGLG Sbjct: 13 LIWGGFTALLVVAPLIFTQSASLSLLCQMGTFIIFALSYNMLLGQGGMLSFGHAVYSGLG 72 Query: 66 AFGAIHLMNRMADGVLAFPVTLVPLVGGLTGALCAVVLGYLTTRRAGTTFAMITLGLVEL 125 AF AIH +N +A G L P+TL+PLVGG+ G + GY+TTR++GTTFAMITLG+VEL Sbjct: 73 AFCAIHAINLVAAGNLHIPITLIPLVGGVAGLFFGALFGYVTTRKSGTTFAMITLGIVEL 132 Query: 126 VSACVLMFPEVFGGEGGISGNRVIGEPVLGISYGPQIQVYYLIAGWLLVCAIAIHALRHT 185 V AC LMFP FGGEGGI +RV+GE GI+YGPQIQVYYLIAGWLL+ +A++A T Sbjct: 133 VFACSLMFPGFFGGEGGIFTDRVVGEAFFGITYGPQIQVYYLIAGWLLLSTVAMYAFTQT 192 Query: 186 PLGRILNAVRDNPERAAFLGYDPQRVRYLALILSAFFAGVSGGLSAINFEIVSAEYVGAL 245 PLGRI+NAVRDNPERA F+GYDPQ VRYL L+LSAFFAG+SG L+AINFEIVSAE V AL Sbjct: 193 PLGRIINAVRDNPERAEFVGYDPQWVRYLTLMLSAFFAGISGALTAINFEIVSAENVSAL 252 Query: 246 RSGTILLFTFIGGTAYFYGPVIGGVVGVLFSSWLSAYTQAWQFYLGALFILIVMTTPGGL 305 RSG ILLFTFIGGTA+F+GP++G +VGV + LS YT AWQ YLG F+LIVM PGG+ Sbjct: 253 RSGMILLFTFIGGTAFFFGPILGAIVGVFLTVVLSNYTNAWQLYLGVFFVLIVMLAPGGI 312 Query: 306 ASLIDRSWHLLQGGQVNARLAGRLAWWLAAAFCTLTGVILATEMAYQASLGSLADTGEGA 365 A L+ + LLQ G++ A LAA L G I+ EM Y SL + Sbjct: 313 AGLLMQFMRLLQYGKLQQMAAHLALALLAALLMGL-GFIVLVEMLYHLSLNA-----RNG 366 Query: 366 ASLMLWGWRIDVHAAAPWGLAALCVVVGAGALVAWQSSGR 405 ++L+L+GW +D A W L ALC V G G L+ W+ R Sbjct: 367 STLLLFGWTLDTAQAQGW-LLALC-VAGTGGLIWWRVRPR 404 >ref|ZP_08274986.1| inner-membrane translocator [Oxalobacteraceae bacterium IMCC9480] gb|EGF31546.1| inner-membrane translocator [Oxalobacteraceae bacterium IMCC9480] Length = 425 Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 225/390 (57%), Positives = 279/390 (71%), Gaps = 7/390 (1%) Query: 8 WLLFALMLLAAPLVFPQSAALSLLSQMGTMVLLCLSYNMLLGEGGMLSFGHAVYSGLGAF 67 W FA++L+ APL+F + A+LSLLSQ+GT+ + LS+NMLLG+GGMLSFGHAVYSGLGAF Sbjct: 16 WCCFAVILVVAPLIFHEGASLSLLSQVGTLTIFALSFNMLLGQGGMLSFGHAVYSGLGAF 75 Query: 68 GAIHLMNRMADGVLAFPVTLVPLVGGLTGALCAVVLGYLTTRRAGTTFAMITLGLVELVS 127 AIH +N MA PV LVPL+GG+ G ++ GY+TT+++GTTF+MITLGLVELV Sbjct: 76 FAIHALN-MATAGAPIPVMLVPLIGGVAGMGFGILFGYVTTKKSGTTFSMITLGLVELVF 134 Query: 128 ACVLMFPEVFGGEGGISGNRVIGEPVLGISYGPQIQVYYLIAGWLLVCAIAIHALRHTPL 187 A LMFPE FGGEGGIS NRVIGEP +GI++GPQIQVYYLIA WL + I ++A TPL Sbjct: 135 AASLMFPEFFGGEGGISTNRVIGEPFMGITFGPQIQVYYLIAFWLFITTIGMYAFTQTPL 194 Query: 188 GRILNAVRDNPERAAFLGYDPQRVRYLALILSAFFAGVSGGLSAINFEIVSAEYVGALRS 247 GR+ NAVRDNPER F+GYD Q VRY+ LILSAFFAG+SGGLSAINFEIVSAE V ALRS Sbjct: 195 GRLANAVRDNPERVEFIGYDTQWVRYMTLILSAFFAGISGGLSAINFEIVSAENVSALRS 254 Query: 248 GTILLFTFIGGTAYFYGPVIGGVVGVLFSSWLSAYTQAWQFYLGALFILIVMTTPGGLAS 307 G +LLFTFIGG +F+GP+IG V+GV + LS +T+AWQ YLG FILIVM PGGLAS Sbjct: 255 GAVLLFTFIGGIGFFFGPMIGAVIGVFLTVMLSDFTKAWQLYLGVFFILIVMYAPGGLAS 314 Query: 308 LIDRSWHLLQGGQVNARLAGRLAWWLAAAFCTLTGVILATEMAYQASLGSLADTGEGAAS 367 L+ + L+ Q +R+A L A G ++ E+ Y +L D G G Sbjct: 315 LLMMNVRLVVHRQF-SRVAPLLGAICGAGLVIFAGAVILIEVLYHVTL----DIGAGPM- 368 Query: 368 LMLWGWRIDVHAAAPWGLAALCVVVGAGAL 397 + L+ ID +A W + A VV+G+ A Sbjct: 369 MTLFRVEIDTGSATAWLVGAALVVIGSIAF 398 >ref|YP_549390.1| inner-membrane translocator [Polaromonas sp. JS666] gb|ABE44492.1| amino acid/amide ABC transporter membrane protein 2, HAAT family [Polaromonas sp. JS666] Length = 430 Score = 349 bits (895), Expect = 5e-94, Method: Composition-based stats. Identities = 206/390 (52%), Positives = 265/390 (67%), Gaps = 6/390 (1%) Query: 6 LPWLLFALMLLAAPLVFPQSAALSLLSQMGTMVLLCLSYNMLLGEGGMLSFGHAVYSGLG 65 L W LFAL+L APLVF S + ++LSQMG +++CLSYN+LLG+GGMLSFGHAVYSG+G Sbjct: 17 LLWSLFALVLALAPLVFTSSLSHTILSQMGIAIIVCLSYNILLGQGGMLSFGHAVYSGMG 76 Query: 66 AFGAIHLMNRMADGVLAFPVTLVPLVGGLTGALCAVVLGYLTTRRAGTTFAMITLGLVEL 125 +F AIH +N+++ G L PV+L+P+ GGL L AVVLG++TT+++GTTFAMITLG+ EL Sbjct: 77 SFLAIHTLNKISSGALGVPVSLIPIAGGLASMLVAVVLGWVTTKKSGTTFAMITLGVGEL 136 Query: 126 VSACVLMFPEVFGGEGGISGNRVIGEPVLGISYGPQIQVYYLIAGWLLVCAIAIHALRHT 185 + A LMFPE FGGEGG+SGNRV G V GI+YGPQ+Q+YYLIA + LVC + A T Sbjct: 137 IWAMSLMFPEFFGGEGGVSGNRVTGAKVWGITYGPQVQLYYLIAAYTLVCTALMFAFTRT 196 Query: 186 PLGRILNAVRDNPERAAFLGYDPQRVRYLALILSAFFAGVSGGLSAINFEIVSAEYVGAL 245 PLGR+LNAVRDNPER F+GYD Q+VRY + I++AFFAG+SGGL+A+NFEIV++E V Sbjct: 197 PLGRMLNAVRDNPERVEFVGYDTQKVRYFSFIVAAFFAGISGGLAALNFEIVTSEVVSGY 256 Query: 246 RSGTILLFTFIGGTAYFYGPVIGGVVGVLFSSWLSAYTQAWQFYLGALFILIVMTTPGGL 305 RSG LLFTF+GG +F+GP+IG V+ VL LS +T+AW YLG +F+ +VM PGG+ Sbjct: 257 RSGAYLLFTFLGGATFFFGPIIGAVLMVLAFVLLSEFTKAWLLYLGLIFLFMVMYAPGGV 316 Query: 306 ASLIDRSWHLLQGGQVNARLAGRLAWWLAAAFCTLTGVILATEMAYQASLGSLADTGEGA 365 ASLI + + G + G LA L A L G EM Y L + Sbjct: 317 ASLIMMNLRVAVFGHLRKLWVGYLALAL-TALVVLIGAAAMIEMIYHLQLNAAL-----G 370 Query: 366 ASLMLWGWRIDVHAAAPWGLAALCVVVGAG 395 L G R+D W A + G G Sbjct: 371 PELTFLGARLDSRGLNSWIGALFVTLTGLG 400 >ref|YP_726022.1| ABC-type transporter, permease component [Ralstonia eutropha H16] emb|CAJ92654.1| ABC-type transporter, permease component [Ralstonia eutropha H16] Length = 437 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 212/394 (53%), Positives = 270/394 (68%), Gaps = 9/394 (2%) Query: 8 WLLFALMLLAAPLVFPQSAALSLLSQMGTMVLLCLSYNMLLGEGGMLSFGHAVYSGLGAF 67 W L L++L PL+F A++L+SQMG M++ LSYNMLLG+ GMLSFGHAVYSGLGAF Sbjct: 31 WSLTVLVMLVLPLIFTGGFAITLMSQMGIMIIFALSYNMLLGQTGMLSFGHAVYSGLGAF 90 Query: 68 GAIHLMNRMADGVLAFPVTLVPLVGGLTGALCAVVLGYLTTRRAGTTFAMITLGLVELVS 127 A+H++N + G + PV+++PLVGGL GA V+ GY+TT+++GTTFAMIT+G+ E+V Sbjct: 91 IAVHVLNMVGAGKVWLPVSMLPLVGGLAGAFFGVIFGYVTTKKSGTTFAMITMGIGEMVF 150 Query: 128 ACVLMFPEVFGGEGGISGNRVIGEPVLGISYGPQIQVYYLIAGWLLVCAIAIHALRHTPL 187 A LMFPE FGGEGGIS NRV+G+P LGI++GP QVYYLIA W L+ +A++A TPL Sbjct: 151 ASSLMFPEFFGGEGGISTNRVVGDPFLGITFGPGRQVYYLIAAWCLLSMVAMYAWTQTPL 210 Query: 188 GRILNAVRDNPERAAFLGYDPQRVRYLALILSAFFAGVSGGLSAINFEIVSAEYVGALRS 247 GRI NAVRDNPER F+GY+ QRVRYL LILSAFFAG++G L AINFEIVSAE V A+RS Sbjct: 211 GRIANAVRDNPERVEFIGYNTQRVRYLVLILSAFFAGIAGALGAINFEIVSAENVSAVRS 270 Query: 248 GTILLFTFIGGTAYFYGPVIGGVVGVLFSSWLSAYTQAWQFYLGALFILIVMTTPGGLAS 307 G +LL FIGG F+GP+IG VV VLF+ LS T+AW YLG F+L+VM PGGLAS Sbjct: 271 GGVLLAVFIGGAGVFFGPIIGAVVFVLFAVALSDLTKAWLLYLGLFFVLMVMFVPGGLAS 330 Query: 308 LIDRSWHLLQGGQVNARLAGRLAWWLAAAFCTLTGVILATEMAYQASLGSLADTGEGAAS 367 L+ LL G++ R+ A AA L +IL E+ Y+ + S T + Sbjct: 331 LLLMQVPLLGKGKL-GRMLPSYARAGGAAVVLLLAMILTVELVYKVQVDSANGT-----T 384 Query: 368 LMLWGWRIDVHAAAPWGLAALCVVVGAGALVAWQ 401 + L+G D AA W + A L AW+ Sbjct: 385 MSLFGVGFD---AATWTPWLAAAALWAAGLFAWR 415