BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.1635.p (281 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775655.1| branched-chain amino acid ABC transporter pe... 374 e-101 ref|YP_001899026.1| inner-membrane translocator [Ralstonia picke... 314 1e-83 emb|CBJ37961.1| putative ABC-type branched-chain amino acid tran... 310 1e-82 ref|NP_519872.1| amino acid transmembrane transmembrane protein ... 307 1e-81 ref|YP_295614.1| inner-membrane translocator [Ralstonia eutropha... 300 2e-79 >ref|YP_003775655.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ63747.1| ABC-type branched-chain amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 311 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 266/280 (95%), Positives = 272/280 (97%) Query: 1 MMGVPNFAHASFYMLGAYVAYALAGVLGFWWALLLAPLIVGVAGALVEHYGLRIVHRYGH 60 MMGVPNFAHASFYMLGAYVAYA+AGVLGFW ALL+APL+VGVAGALVEHYGLRIVHRYGH Sbjct: 31 MMGVPNFAHASFYMLGAYVAYAIAGVLGFWPALLIAPLVVGVAGALVEHYGLRIVHRYGH 90 Query: 61 VPELLFTFGLSYLVVELVQLVWGRSPVPYRIPPELDGTLFTLYSTAFPVYRGFMLLVSAL 120 VPELLFTFGLSYLVVELVQLVWGRSPVPYRIPP LDGTLFTLY+TAFPVYRGFMLLV+AL Sbjct: 91 VPELLFTFGLSYLVVELVQLVWGRSPVPYRIPPALDGTLFTLYTTAFPVYRGFMLLVAAL 150 Query: 121 MLLALWLLLRHTRIGLVIQAALTHPQMAEALGHNVPRVFMLVFGGGCALAALAGVIGGNA 180 MLLALWLLLRHTRIGLVIQAALTHPQM EALGHNVPRVFMLVFGGGCALAALAGVIGGNA Sbjct: 151 MLLALWLLLRHTRIGLVIQAALTHPQMVEALGHNVPRVFMLVFGGGCALAALAGVIGGNA 210 Query: 181 FVTEPGMAAAVGSIIFVVVVVGGLGSLAGAFITSLLIGMMQTFAVALDVSLASLGLQVPS 240 FVTEPGMAAAVGSIIFVVVVVGGLGSLAGAFITSLLIGMMQTFAVALDVSLASLGL V Sbjct: 211 FVTEPGMAAAVGSIIFVVVVVGGLGSLAGAFITSLLIGMMQTFAVALDVSLASLGLSVAP 270 Query: 241 GSALAPLARLTLAQVAPVLPYLLLVVMLIVRPKGLMGRRE 280 SALAPL RLTLAQVAPVLPYLLLVVMLIVRPKGLMG+RE Sbjct: 271 DSALAPLLRLTLAQVAPVLPYLLLVVMLIVRPKGLMGQRE 310 >ref|YP_001899026.1| inner-membrane translocator [Ralstonia pickettii 12J] gb|ACD26594.1| inner-membrane translocator [Ralstonia pickettii 12J] Length = 330 Score = 314 bits (804), Expect = 1e-83, Method: Composition-based stats. Identities = 203/285 (71%), Positives = 235/285 (82%), Gaps = 4/285 (1%) Query: 1 MMGVPNFAHASFYMLGAYVAYALAGVLGFWWALLLAPLIVGVAGALVEHYGLRIVHRYGH 60 MMGV NFAHASFYMLGAY AY ++G LGFW AL++APL+VG GA+VE +GLR VHRYGH Sbjct: 46 MMGVLNFAHASFYMLGAYFAYVVSGYLGFWTALIVAPLLVGALGAVVERFGLRTVHRYGH 105 Query: 61 VPELLFTFGLSYLVVELVQLVWGRSPVPYRIPPELDGTLFTLYSTAFPVYRGFMLLVSAL 120 V ELLFTFGL+YL+ E V+LVWG VPYR+P LDG LFTL++++FP YR FM+LVS L Sbjct: 106 VAELLFTFGLAYLIEEGVKLVWGLPAVPYRVPDALDGPLFTLFTSSFPKYRAFMMLVSLL 165 Query: 121 MLLALWLLLRHTRIGLVIQAALTHPQMAEALGHNVPRVFMLVFGGGCALAALAGVIGGNA 180 ML+ ++LLL TRIGLVIQAALTHP M EALGHNVPRVFMLVFGGGCALA LAGVIGGNA Sbjct: 166 MLVGIFLLLTRTRIGLVIQAALTHPDMVEALGHNVPRVFMLVFGGGCALAGLAGVIGGNA 225 Query: 181 FVTEPGMAAAVGSIIFVVVVVGGLGSLAGAFITSLLIGMMQTFAVALDVSLAS----LGL 236 FVTEP MAAAVGSI+FVV VVGG+GSL GAF+ SLLIG +QTFAV LD+S+ S +G+ Sbjct: 226 FVTEPSMAAAVGSIVFVVAVVGGMGSLVGAFVASLLIGCIQTFAVTLDISVTSVLGKIGV 285 Query: 237 QVPSGSALAPLARLTLAQVAPVLPYLLLVVMLIVRPKGLMGRRES 281 + L + LT+AQVAPVLPYLLLV+MLI RP+GLMG RES Sbjct: 286 TLNPDVPLISVWNLTIAQVAPVLPYLLLVLMLIFRPRGLMGTRES 330 >emb|CBJ37961.1| putative ABC-type branched-chain amino acid transporter, membrane component (livH) [Ralstonia solanacearum CMR15] Length = 325 Score = 310 bits (795), Expect = 1e-82, Method: Composition-based stats. Identities = 206/284 (72%), Positives = 234/284 (82%), Gaps = 4/284 (1%) Query: 1 MMGVPNFAHASFYMLGAYVAYALAGVLGFWWALLLAPLIVGVAGALVEHYGLRIVHRYGH 60 MMGV NFAHASFYMLGAY AY ++G LGFW AL++APL+VG GALVE +GLR VHRYGH Sbjct: 41 MMGVLNFAHASFYMLGAYFAYVVSGYLGFWAALIVAPLLVGALGALVERFGLRTVHRYGH 100 Query: 61 VPELLFTFGLSYLVVELVQLVWGRSPVPYRIPPELDGTLFTLYSTAFPVYRGFMLLVSAL 120 V ELLFTFGL+YL+ E V+LVWG VPYR+P LDG LFTL++++FP YR FM+LVS L Sbjct: 101 VAELLFTFGLAYLIEEGVKLVWGLPAVPYRVPEALDGPLFTLFTSSFPKYRAFMMLVSLL 160 Query: 121 MLLALWLLLRHTRIGLVIQAALTHPQMAEALGHNVPRVFMLVFGGGCALAALAGVIGGNA 180 ML+ ++LLL TRIGLVIQAALTHP M EALGHNVPRVFMLVFGGGCALA LAGVIGGNA Sbjct: 161 MLVGIFLLLTRTRIGLVIQAALTHPDMVEALGHNVPRVFMLVFGGGCALAGLAGVIGGNA 220 Query: 181 FVTEPGMAAAVGSIIFVVVVVGGLGSLAGAFITSLLIGMMQTFAVALDVSLAS----LGL 236 FVTEP MAAAVGSI+FVV VVGG+GSL GAFI SLLIG +QTFAV LDVS+ S LG+ Sbjct: 221 FVTEPSMAAAVGSIVFVVAVVGGMGSLVGAFIASLLIGCIQTFAVTLDVSVTSLLGKLGV 280 Query: 237 QVPSGSALAPLARLTLAQVAPVLPYLLLVVMLIVRPKGLMGRRE 280 + L + LT+AQVAPVLPYLLLV+MLI RP+GLMG RE Sbjct: 281 ALNPDVPLISVWNLTIAQVAPVLPYLLLVLMLIFRPRGLMGTRE 324 >ref|NP_519872.1| amino acid transmembrane transmembrane protein [Ralstonia solanacearum GMI1000] emb|CAD15453.1| putative amino acid transmembrane transmembrane protein [Ralstonia solanacearum GMI1000] Length = 315 Score = 307 bits (787), Expect = 1e-81, Method: Composition-based stats. Identities = 206/284 (72%), Positives = 234/284 (82%), Gaps = 4/284 (1%) Query: 1 MMGVPNFAHASFYMLGAYVAYALAGVLGFWWALLLAPLIVGVAGALVEHYGLRIVHRYGH 60 MMGV NFAHASFYMLGAY AY ++G LGFW AL++APL+VG GALVE +GLR VHRYGH Sbjct: 31 MMGVLNFAHASFYMLGAYFAYVVSGYLGFWAALIVAPLLVGALGALVERFGLRTVHRYGH 90 Query: 61 VPELLFTFGLSYLVVELVQLVWGRSPVPYRIPPELDGTLFTLYSTAFPVYRGFMLLVSAL 120 V ELLFTFGL+YL+ E V+LVWG VPYR+P LDG LFTL++++FP YR FM+LVS L Sbjct: 91 VAELLFTFGLAYLIEEGVKLVWGLPAVPYRVPEALDGPLFTLFTSSFPKYRAFMMLVSLL 150 Query: 121 MLLALWLLLRHTRIGLVIQAALTHPQMAEALGHNVPRVFMLVFGGGCALAALAGVIGGNA 180 ML+ ++LLL TRIGLVIQAALTHP M EALGHNVPRVFMLVFGGGCALA LAGVIGGNA Sbjct: 151 MLVGIFLLLTRTRIGLVIQAALTHPDMVEALGHNVPRVFMLVFGGGCALAGLAGVIGGNA 210 Query: 181 FVTEPGMAAAVGSIIFVVVVVGGLGSLAGAFITSLLIGMMQTFAVALDVSLAS----LGL 236 FVTEP MAAAVGSI+FVV VVGG+GSL GAFI SLLIG +QTFAV LDVS+ S LG+ Sbjct: 211 FVTEPSMAAAVGSIVFVVAVVGGMGSLVGAFIASLLIGCIQTFAVTLDVSVTSLLGKLGV 270 Query: 237 QVPSGSALAPLARLTLAQVAPVLPYLLLVVMLIVRPKGLMGRRE 280 + L + LT+AQVAPVLPYLLLV+MLI RP+GLMG RE Sbjct: 271 ALNPDVPLISVWNLTIAQVAPVLPYLLLVLMLIFRPRGLMGTRE 314 >ref|YP_295614.1| inner-membrane translocator [Ralstonia eutropha JMP134] gb|AAZ60770.1| amino acid/amide ABC transporter membrane protein 1, HAAT family [Ralstonia eutropha JMP134] Length = 342 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 204/285 (71%), Positives = 238/285 (83%), Gaps = 4/285 (1%) Query: 1 MMGVPNFAHASFYMLGAYVAYALAGVLGFWWALLLAPLIVGVAGALVEHYGLRIVHRYGH 60 MMGV NFAHASFYMLGAY AY +A +GFW AL+LAPL+V AGALVE +GLR VH+YGH Sbjct: 58 MMGVLNFAHASFYMLGAYFAYTVASKIGFWPALILAPLLVAFAGALVERFGLRAVHKYGH 117 Query: 61 VPELLFTFGLSYLVVELVQLVWGRSPVPYRIPPELDGTLFTLYSTAFPVYRGFMLLVSAL 120 V ELLFTFGL+YL+ E V+LVWG + VPYRIP ELDG LFT+++++FP YR FM+LVS Sbjct: 118 VAELLFTFGLAYLIEEGVKLVWGLAAVPYRIPAELDGPLFTVFTSSFPKYRAFMMLVSLG 177 Query: 121 MLLALWLLLRHTRIGLVIQAALTHPQMAEALGHNVPRVFMLVFGGGCALAALAGVIGGNA 180 ML+A++L+L TRIGLVIQAALTHP+M EALGHNVPRVFM+VFGGG ALA LAGVIGGNA Sbjct: 178 MLVAIYLVLTRTRIGLVIQAALTHPEMVEALGHNVPRVFMMVFGGGAALAGLAGVIGGNA 237 Query: 181 FVTEPGMAAAVGSIIFVVVVVGGLGSLAGAFITSLLIGMMQTFAVALDVSLA----SLGL 236 FVTEP MAAAVGSI+FVV VVGG+GSL GAFI S+LIG++QTFAV +D SLA S+GL Sbjct: 238 FVTEPSMAAAVGSIVFVVAVVGGMGSLVGAFIASILIGVLQTFAVTIDASLAGLFNSIGL 297 Query: 237 QVPSGSALAPLARLTLAQVAPVLPYLLLVVMLIVRPKGLMGRRES 281 V + L +LT+AQVAPVLPYLLLV+MLI RP+GLMG RES Sbjct: 298 AVSDATPFYSLWKLTVAQVAPVLPYLLLVLMLIFRPRGLMGTRES 342